mex3b (mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827)


Basic Information

Item Value
gene id mex3b
gene name mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10068517 ~ 10073310 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930847.2
GCTGACGTCATGCAAGCATATCCCCCCCTTCCAGTTTAGTGCcgctgctgctgtgtgtctgCAGCAAAAACtcagagagaaaacaggaaaagagcTGAGCGCAGGGAGGGGCACTTTCGGAGGAATTAGTACCACCGCCGGCACCGCAACAACCCCCAGTACCTTCGGAATACGCGTTCTGGGGGGATAAAATCAGGAGCTCGGATTTGCACTGCTTCTTtcccttctttccttttttactgCCAGGaccagagagggagagagcactgatttttttttttttttgcaccaggGGCTTTTCTTTCCAGAgcctcctcttctctccctcttcaATCCCCacccttctttctctcctttgtcCGGTGTTGCTGATCCAAGAGAGCTGCCGAGAAAATAACAACAATCCCCCCCCTTCTTCCCGAGATGCCTAGCTCCCTGTTCCCCGAGCTGGAGAGGAATGGCAGCGGCAGCAGCCAGGGGGTCGACGCCCTGGACGACCAAAGAGCTCTGCAGCTCGCGCTGGACCTCACCCTGCTCGACCTGGACGAGAACCCCGCGTGCGACAACGAGCCCCGGAAGAAGAGCGTGAACATGACCGAGTGTGTGCCCGTGCCCAGCTCCGAGCATGTGGCCGAGATCGTGGGCAGACAAGGTTGCAAGATTAAAGCCCTGCGTGCCAAGACCAACACCTACATTAAGACTCCGGTGCGAGGGGAGGAGCCCGTGTTCGTGGTGACGGGCAGGAGGGAGGACGTAGCCATGGCGCGGAGGGAAATCATCTCAGCGGCCGAGCATTTCTCCATGATCCGAGCATCACgaaacaaaaacagcagcatGAATGGGGGTGGCAGCGTGCCTGGGCCGCCCAACCTACCGGGTCAAACCACCATCCAGGTGCGAGTGCCATACCGTGTTGTCGGGTTGGTGGTGGGACCCAAAGGAGCCACGATCAAGCGCATCCAACAGCAGACACACACCTATATTGTGACCCCGAGCCGAGATAAGGAGCCTGTGTTCGAGGTAACAGGCATGCCGGAGAATGTGGATCGAGCGCGTGATGAGATTGAGGCGCACATCGCCATGCGCACAGGCGCTGGGCTGATCGAGTTCGCCAATGCTGCTGACGATAATGACTTCCACGCCAATGGCACAGATGTGGGCTTTGAAATGCATGCAGCTAGTGCCAGCAGTCATCACGCCAGCCTATGGGGCAAAACAAGTGCTAGTGCTAGTGCCAGCGCCACGCCCAGCCTTGGACGCAAGCCCTTCGCCAGCTATCGCAACGACAGCTCCAGCTCTCTAGGTAGCGCCTCCACTGACTCGTACTTCGGCACCAATTATAGCCCGCCGAGTCCAGCACTGagctacaacaacaataacaacaacaacaacctgaACATCAACGGCAACTCGTTTGTTTATGGCGGCGAGATCGTATCTCCTGACTGTGCTGACCTCGCGTTCGATTCCTCGCCCGGATTTGACCCAGCGCCTGGTTTGATTTGGTCTCAGTACGAACGTAGCATGAGTTTAACAAACAGTGCTACGTCGTCCTCCATGTTCCCTTCCAATGCTTCCTCTAACGCTAATGGGATTCTGGCCAACCAGAGGCGGCTGAACGGGATGAACTGCTCCACCCAGCCTCGTTTATCCCCGCCCCTTCATCATGTGGGTGGGATCAGTGATCATCCACTGGCCAGGAGGGTACGCAGCGACCCAGGTGGAGGCTCCTTAAATTTCCCAGGCTACAACAACATGGCTTCCCATCTCCCTGGGTTGCCCTCAGATTCATCTGCGTCCTCCTCTTCTTCgtcatcttcctcttcctcctcttcctcttcctcggGAACGAGCCGTAAAGGCAGCCGGGACTGTTCAGTGTGCTTCGAGAGCGAGGTGATCGCCGCCCTCGTGCCATGCGGCCATAACCTCTTCTGCATGGAGTGTGCCAACCGCATCTGCGAGCGCAATGACCCTGAATGCCCCGTCTGCCACGCTGCAGTTACTCAGGCAATACgtatattttcataattaaataaacaattcaaAGATGATGACAAAGACATGACTATGATAGCAACAAAGATAGCACCACGACAGAACATTTAACCACAAACTCCTGTTATGGCTTTATGAAACTCCTAATAATAACGCGTCTATCATAcgtgtatatacatatgtatgtgaaGCTGCAGTATCCAAAAAAGTGAAAGCCGAATGAGGGCTCTGGTGTCATTTGCTTATACTGTAGCTCGGGACGAATAATTTCAACCTCTAATgcatgtttaaatgtatttaaaagcCTAGTAATCTACATAGTTCTAGTACAGCGTACGCAGACAAAGTTTTTCCGCAAAGTCCGGAGAAGGGCCGCAAAAGTCTGGCCAACGGTACGTGAGTCAGCATGTAGACTGTTATCAAAGTCAGGCCTTTCGATTTCACCAAGGGATCGGAAACACATTGATTGACTTACAGCAACGACGATACTGCAGCGACTACAAATTATCCGAGGCGGAGTGATAACATATCctgcatatatatgtatagaacAAACGAACCAACGAAATCCACacgttttaaatattaatgacattaatacagattgaagtattttattcttttttgaCTTGAAAGATTATATTTCATATGGCAAAGATGTTTacagatattttaatttaagttCAGTGAACTTTTTTGTAGCTGGGTTCAAATatggtttattttttagtaTGGCCTTCGGGCAACGAacactgtattattttaatatcacaCAGAAAATGTGGATGGACGATCCGAAACACGGTGTGTACTTGCATTAACAGTATTCTGTTGGGACTGAGGGTTTCTaggttcagcaaaaaaaaaaatcttttaaatccGTTTCACCCagcatattttttattcagtaatataaagcatattttattctatattattaCGAAGCATTCAAATGTATAAAACTTAGTAAGTTGGACAAAAGGAAACCATTTATGCTTTCTAAAAATTTGTATGAATTAGATTCCAGTGGGTATTACAGACTTCTGTTGCACCACTATAGTTTTAGTATTTCTATTTTAATACGTTTGTTTACCACTTGTTTATGTATATGTAGGTGAAGTTACTTGAGCGTAAAAGTACTTTATTGAgcaaagtttaaaaacaaagtatattttattttatgataaaaaaaaggcCTTTAACCTCATGGTCAAATACTAATATTATATTTGCTGAAACAAGATTTGAAAAATGTATcaagagttttatttttctgacatTTAAAGTTCTACATGATAAAGTAAAACTTAAGTAATGGTGctacttcatgtttttttaagtatttctaTATAAGTCCAATAAAATGGTACATGAAAGA

Function

symbol description
mex3b Predicted to enable RNA binding activity and metal ion binding activity. Is expressed in ciliary marginal zone; deep blastomere; and superficial blastomere. Orthologous to human MEX3B (mex-3 RNA binding family member B).
mex3d Enables mRNA 3'-UTR AU-rich region binding activity. Located in nucleus and perinuclear region of cytoplasm.

NR:

description
PREDICTED: RNA-binding protein MEX3B

GO:

id name namespace
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15686 MEX3, RKHD; RNA-binding protein MEX3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930847.2 True 3376 mRNA 0.47 2 10068517 10073310

Neighbor

gene id symbol gene type direction distance location
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding downstream 203732 9837999 ~ 9864785 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding downstream 232557 9827948 ~ 9835960 (-)
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding downstream 300417 9758652 ~ 9768100 (-)
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding downstream 1117708 8926812 ~ 8950809 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding downstream 1144132 8807587 ~ 8924385 (-)
efl1 efl1,eftud1 coding upstream 40773 10114083 ~ 10251340 (-)
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding upstream 184997 10258307 ~ 10452771 (-)
LOC113536710 NA coding upstream 453723 10527033 ~ 10530371 (-)
rnf13 rnf13 coding upstream 471457 10544767 ~ 10555198 (-)
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding upstream 507383 10580693 ~ 10592964 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding downstream 294108 9770818 ~ 9774409 (-)
G179004 NA non-coding downstream 314138 9739531 ~ 9754379 (-)
G178961 NA non-coding downstream 441334 9625284 ~ 9627183 (-)
G178914 arnt2,LOC107395664 non-coding downstream 624590 9440919 ~ 9443927 (-)
G178868 NA non-coding downstream 754867 9312854 ~ 9313650 (-)
G179372 NA non-coding upstream 38718 10112028 ~ 10112242 (-)
G179466 NA non-coding upstream 438311 10511621 ~ 10512024 (-)
G179469 NA non-coding upstream 441386 10514696 ~ 10515201 (-)
G179478 NA non-coding upstream 488093 10561403 ~ 10563452 (-)
G179485 NA non-coding upstream 501226 10574536 ~ 10576032 (-)
G179035 NA other downstream 253292 9813892 ~ 9815225 (-)
G178942 NA other downstream 545187 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 661299 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 732331 9320966 ~ 9336186 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other downstream 1073397 8983182 ~ 8995120 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other upstream 413425 10486735 ~ 10523579 (-)
LOC113536673 NA other upstream 532201 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 1170537 11243847 ~ 11246310 (-)
G179803 ncl other upstream 1335782 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 1418397 11491707 ~ 11503962 (-)

Expression


Co-expression Network