sinhcafl (LOC108271422,LOC107562797,LOC108413309,LOC107727116,LOC107686816,LOC101074870,LOC103370878)


Basic Information

Item Value
gene id sinhcafl
gene name LOC108271422,LOC107562797,LOC108413309,LOC107727116,LOC107686816,LOC101074870,LOC103370878
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4131602 ~ 4137388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930858.2
TGGACTTCCTGTGAGCCGCCGCGCCGTTTTGCTCTGGTATTTGTATGCTAATGAGGCGCCTCCATTCATGCGCGTGCGGTCCGTAGTAAGACATGCGCAGTGCGGAGGAATAAAACGGACGGAATTTCAAAGTTTCTGACGGATCAACCAGAGATGTTTGGATTTCACAAATCCAAGATTTATCGCAGCCACGAAGGCTGCTGCATTTGCAAGACCAAGTCCTCCAGTTCCAGGTTCACAGACAGCAGCAGATACGAGGAGACCTTCCGCCTCTGCTTCGGTTTATCTGAAGACCGAGTCGGCGACATCTGCAACGCCTGTGTACTGCTGGTAAAGAGATGGAAAAAGTTACCCCATGGATCGAAGAAGAACTGGAGTCACGTGGTGGACGCGAGAGCAGGACCTGGCTTCAAGCTGACAAAACCCAAAAAAGTGAAGAATATcgatgggaagaagaaaagcaagCTGAAGAAACTGCACAAGTTTAAACGGCAAAATTCTGATGCCCACAGCACTACATCCAGCATGTCTCCCTCTCAGTCCCCCAGCCACAGCAACCAATCAGACGATGGCTCAGACGTTGAGACCAAGCAGAGGCGCCCGACTCCAGCAGGCTTCTCGTTTCTTGACCTCTCCTACTGGAAAAGACAGAAAGTGTGCTGTGGCATTGTATACAAAGGGCGTTTCGGTGAAGTCATCATCGACCCGCGCCTCTTCAAGCCCTGCTGCGGCTCCAAGCAGCCGCCGGCCGTGACGTCGCCCGCCACGGACTCCCCGTGCGCCGCCGACACGATGCCATCTCCCCTCGCAGAGGACTTGAAGGAGACCTGGTGACCTCGTTGCACCTCCAAGCGTCTCCTCATGGCGTGGCTTTGTCTCCAGTGGCAGACTCTATCATTCCCACATGACTGTATAAATGCTgattcttgctttttttttggttcatttgttaTAGCGATTTCCTTttgagagaatttttttttttttttttgtaaagaaaacgaaaaaaatcaattaaaaaaaattaagtatgGGCATTAGTAAATATTCATAGGATCAGGATCAAATTGACGGTTTAAGACttgtaatcctttttttttttttttttttttttttttttttttttaaattatattttttataaatatttttgggactgtataatattttgcatttttgtagtgcttgtaaatattttttttcttcaattccAGTGCACCAAAAGCCTCCTATCTGGCTCCTAGTTTCCTGTGTGTACATTGAGTTataaatgttcatgaaatacGGCATATTGATGTGTCCCTGACGTTGCTCAATGTGTTGATGAAATGGTTccagtttttaaacaaatcagctGTACTGTGTCTACGAGCTCATTTGATCTAGATGTGCTGGTAGAGTGGTCAGTTTTATGACACAGTGTTTTGGTTGGCAAGGTTTGAATGGGCTGATTAATATTCACAAAGTGATTATATCTCAGTTTTTGTCCATTAAATGCATGCATGTCTGTTAATCTGTCATTCCTAATTGCTATTGTCACAAGACCACAGAATGCGGGACACAAACCTTTTGCCAGTCCATCCAACAATAAACGTGCATGCTAATATTGATATtcaaaatgatatttattatagCATGCTAAGTCAGCATGTACTAAATGCATCTTCAGTTATATTGCTTAACATTCAATGTGATGGtgtgaatttttaaattttttttttggttaacaTTGATCACCAGTAATTTTTCACTACAGATTTTAACAGCATCTGTTGATAccgtgatttaaaaaaaaaaataaaactattttggCAGCTGC
>XM_026930859.2
GACGGTAAGCTCTTTGTTTGTAATCGGTGTGAAGTCGTGATTAAACGCCGTGACATGATCAACCAGAGATGTTTGGATTTCACAAATCCAAGATTTATCGCAGCCACGAAGGCTGCTGCATTTGCAAGACCAAGTCCTCCAGTTCCAGGTTCACAGACAGCAGCAGATACGAGGAGACCTTCCGCCTCTGCTTCGGTTTATCTGAAGACCGAGTCGGCGACATCTGCAACGCCTGTGTACTGCTGGTAAAGAGATGGAAAAAGTTACCCCATGGATCGAAGAAGAACTGGAGTCACGTGGTGGACGCGAGAGCAGGACCTGGCTTCAAGCTGACAAAACCCAAAAAAGTGAAGAATATcgatgggaagaagaaaagcaagCTGAAGAAACTGCACAAGTTTAAACGGCAAAATTCTGATGCCCACAGCACTACATCCAGCATGTCTCCCTCTCAGTCCCCCAGCCACAGCAACCAATCAGACGATGGCTCAGACGTTGAGACCAAGCAGAGGCGCCCGACTCCAGCAGGCTTCTCGTTTCTTGACCTCTCCTACTGGAAAAGACAGAAAGTGTGCTGTGGCATTGTATACAAAGGGCGTTTCGGTGAAGTCATCATCGACCCGCGCCTCTTCAAGCCCTGCTGCGGCTCCAAGCAGCCGCCGGCCGTGACGTCGCCCGCCACGGACTCCCCGTGCGCCGCCGACACGATGCCATCTCCCCTCGCAGAGGACTTGAAGGAGACCTGGTGACCTCGTTGCACCTCCAAGCGTCTCCTCATGGCGTGGCTTTGTCTCCAGTGGCAGACTCTATCATTCCCACATGACTGTATAAATGCTgattcttgctttttttttggttcatttgttaTAGCGATTTCCTTttgagagaatttttttttttttttttgtaaagaaaacgaaaaaaatcaattaaaaaaaattaagtatgGGCATTAGTAAATATTCATAGGATCAGGATCAAATTGACGGTTTAAGACttgtaatcctttttttttttttttttttttttttttttttttttaaattatattttttataaatatttttgggactgtataatattttgcatttttgtagtgcttgtaaatattttttttcttcaattccAGTGCACCAAAAGCCTCCTATCTGGCTCCTAGTTTCCTGTGTGTACATTGAGTTataaatgttcatgaaatacGGCATATTGATGTGTCCCTGACGTTGCTCAATGTGTTGATGAAATGGTTccagtttttaaacaaatcagctGTACTGTGTCTACGAGCTCATTTGATCTAGATGTGCTGGTAGAGTGGTCAGTTTTATGACACAGTGTTTTGGTTGGCAAGGTTTGAATGGGCTGATTAATATTCACAAAGTGATTATATCTCAGTTTTTGTCCATTAAATGCATGCATGTCTGTTAATCTGTCATTCCTAATTGCTATTGTCACAAGACCACAGAATGCGGGACACAAACCTTTTGCCAGTCCATCCAACAATAAACGTGCATGCTAATATTGATATtcaaaatgatatttattatagCATGCTAAGTCAGCATGTACTAAATGCATCTTCAGTTATATTGCTTAACATTCAATGTGATGGtgtgaatttttaaattttttttttggttaacaTTGATCACCAGTAATTTTTCACTACAGATTTTAACAGCATCTGTTGATAccgtgatttaaaaaaaaaaataaaactattttggCAGCTGC
>XM_034308802.1
CTCCGTCTTGAGGAGCATTTGGCGCTCTCCATGGGGGAAAGTTTGAATAAAGGGAACACAGACGCCTTAATTCAACCGTTAGCAGAAAGATTCAATCCGACATGTTATGAGAAGAGAGTAGAAATTCAGCCTCGGATCAACCAGAGATGTTTGGATTTCACAAATCCAAGATTTATCGCAGCCACGAAGGCTGCTGCATTTGCAAGACCAAGTCCTCCAGTTCCAGGTTCACAGACAGCAGCAGATACGAGGAGACCTTCCGCCTCTGCTTCGGTTTATCTGAAGACCGAGTCGGCGACATCTGCAACGCCTGTGTACTGCTGGTAAAGAGATGGAAAAAGTTACCCCATGGATCGAAGAAGAACTGGAGTCACGTGGTGGACGCGAGAGCAGGACCTGGCTTCAAGCTGACAAAACCCAAAAAAGTGAAGAATATcgatgggaagaagaaaagcaagCTGAAGAAACTGCACAAGTTTAAACGGCAAAATTCTGATGCCCACAGCACTACATCCAGCATGTCTCCCTCTCAGTCCCCCAGCCACAGCAACCAATCAGACGATGGCTCAGACGTTGAGACCAAGCAGAGGCGCCCGACTCCAGCAGGCTTCTCGTTTCTTGACCTCTCCTACTGGAAAAGACAGAAAGTGTGCTGTGGCATTGTATACAAAGGGCGTTTCGGTGAAGTCATCATCGACCCGCGCCTCTTCAAGCCCTGCTGCGGCTCCAAGCAGCCGCCGGCCGTGACGTCGCCCGCCACGGACTCCCCGTGCGCCGCCGACACGATGCCATCTCCCCTCGCAGAGGACTTGAAGGAGACCTGGTGACCTCGTTGCACCTCCAAGCGTCTCCTCATGGCGTGGCTTTGTCTCCAGTGGCAGACTCTATCATTCCCACATGACTGTATAAATGCTgattcttgctttttttttggttcatttgttaTAGCGATTTCCTTttgagagaatttttttttttttttttgtaaagaaaacgaaaaaaatcaattaaaaaaaattaagtatgGGCATTAGTAAATATTCATAGGATCAGGATCAAATTGACGGTTTAAGACttgtaatcctttttttttttttttttttttttttttttttttttaaattatattttttataaatatttttgggactgtataatattttgcatttttgtagtgcttgtaaatattttttttcttcaattccAGTGCACCAAAAGCCTCCTATCTGGCTCCTAGTTTCCTGTGTGTACATTGAGTTataaatgttcatgaaatacGGCATATTGATGTGTCCCTGACGTTGCTCAATGTGTTGATGAAATGGTTccagtttttaaacaaatcagctGTACTGTGTCTACGAGCTCATTTGATCTAGATGTGCTGGTAGAGTGGTCAGTTTTATGACACAGTGTTTTGGTTGGCAAGGTTTGAATGGGCTGATTAATATTCACAAAGTGATTATATCTCAGTTTTTGTCCATTAAATGCATGCATGTCTGTTAATCTGTCATTCCTAATTGCTATTGTCACAAGACCACAGAATGCGGGACACAAACCTTTTGCCAGTCCATCCAACAATAAACGTGCATGCTAATATTGATATtcaaaatgatatttattatagCATGCTAAGTCAGCATGTACTAAATGCATCTTCAGTTATATTGCTTAACATTCAATGTGATGGtgtgaatttttaaattttttttttggttaacaTTGATCACCAGTAATTTTTCACTACAGATTTTAACAGCATCTGTTGATAccgtgatttaaaaaaaaaaataaaactattttggCAGCTGC

Function

NR:

description
protein FAM60A-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930858.2 True 1819 mRNA 0.42 6 4131602 4137388
XM_026930859.2 False 1734 mRNA 0.41 6 4131739 4137388
XM_034308802.1 False 1812 mRNA 0.41 6 4131940 4137388

Neighbor

gene id symbol gene type direction distance location
dennd5a dennd5a,LOC107694459,LOC107727099,LOC107730084 coding upstream 3048 4079858 ~ 4128554 (+)
tmem41b tmem41b,LOC107730092,LOC107727087,LOC107686813,LOC107694458,LOC106562360 coding upstream 53874 4066579 ~ 4077728 (+)
pkd1l2a pkd1l2,LOC108413304 coding upstream 91885 4019927 ~ 4039717 (+)
dkk3a LOC108270596 coding upstream 208633 3912784 ~ 3922969 (+)
LOC113536513 LOC108271259,LOC108411663,LOC107558370,LOC107552396,LOC107597482,LOC107657963,LOC107713003,LOC107746258 coding upstream 559339 3565114 ~ 3572263 (+)
LOC113536728 NA coding downstream 5249 4142637 ~ 4145671 (+)
mmp15b mmp15,LOC108271068,LOC107584709,LOC107686817,LOC107679737,LOC107562795 coding downstream 69570 4206958 ~ 4228964 (+)
tpcn2 tpcn2,LOC107584739 coding downstream 164883 4302271 ~ 4322689 (+)
ccnd1 ccnd1,LOC107686820,LOC107584710,LOC107730086,LOC107727103,LOC107679730 coding downstream 349164 4486552 ~ 4491375 (+)
fadd NA coding downstream 510009 4647397 ~ 4651092 (+)
G175703 LOC108271004 non-coding upstream 120369 4010238 ~ 4011233 (+)
G175527 NA non-coding upstream 517205 3614191 ~ 3614397 (+)
G175517 tmed3,p24b,LOC108271219,LOC107580748,LOC107750507,LOC108441851,LOC105913311 non-coding upstream 522758 3605162 ~ 3608844 (+)
G175493 NA non-coding upstream 549663 3579978 ~ 3581939 (+)
G175389 NA non-coding upstream 678782 3447942 ~ 3452820 (+)
G175744 NA non-coding downstream 30799 4168187 ~ 4168401 (+)
G175827 NA non-coding downstream 162717 4300105 ~ 4300563 (+)
G175843 NA non-coding downstream 231219 4368607 ~ 4368810 (+)
G175894 NA non-coding downstream 248397 4385785 ~ 4385994 (+)
G175905 NA non-coding downstream 372028 4509416 ~ 4509701 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 473312 3647355 ~ 3658290 (+)
pth1b NA other upstream 484487 3645743 ~ 3647115 (+)
G174546 NA other upstream 2052975 2078077 ~ 2078627 (+)
G174536 NA other upstream 2071319 2058970 ~ 2060283 (+)
G173898 NA other upstream 2766671 1361782 ~ 1364931 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 143856 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 476018 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 519217 4656605 ~ 4661136 (+)
LOC113536390 LOC108271079 other downstream 2984997 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 3130443 7267831 ~ 7271320 (+)

Expression


Co-expression Network