scamp2l (LOC108271388)


Basic Information

Item Value
gene id scamp2l
gene name LOC108271388
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4907933 ~ 4919259 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930860.2
TCAGAGAGTAAACTGTGAGGTGAGGAGGTTTTTGTCCCTCCCTTGTCTAACCTGAGAGACCGGACAGGAGACAGTCACGTCGCCGTGGGATTCCGTCACCACAGACTGCAGCGCGCATGCGCACTACGTTGCCAAGGACATCGCGAAGGCGGGTGTGGGACACCGTCGGGCGCGCGCACCTGTTTGTACCtgaagaagaaataaattaaaaataaataaattaaaaaaaaaacatgtcggGCTTCGACAGCAATCCTTTCGCCGATCCTGTGGAGGTGAATCCTTTCCAGGATCCCTCAGTGACCCAGGTGACCCGCACAGGGAGAGAGGGCATAGACGAGTACAACCCTTTCTCTGCCAGAAGCCAGGATAATGGAACTACCGTACCTTTCTCAGCTGGATCTCAGCCTGCTATTCTGCAGCCCACACTGGAGCCCAGTCCTCAGGCCAGAGCGGCGGCTGCGCAGGCCGAGCTCCTCAAACAGCAGGCGGAATTGGAGAAGAAAGCAGCCGAGCTGGAACGCAAGGAGCAGGAACTCCAGAACCGAGACGCAGGCAGGGGTAAAGAAAACAACTGGCCTCCACTGCCGAGGTTTTTCCCAATAAAGCCATGTTTCTATCAGGATTTTAATGAGGAGATCCCAGGGGAATACCAAAGGGTCTGCAAGATGATGTACTACCTCTGGatgtATCACTGTGTGACGCTCTTCTTGAACCTGCTGGCATGTTTGGCCTGCTTCATTGCAAATGCTCAGAACGGCATTGACTTCGGCCTGTCCATCCTCTGGTTTATTGTCTTCAGCCCCGCCGCCTTCGTGTGCTGGTACCGGCCTGTTTATAAAGCCTTCAGGTCCGACAGCTCCTtcagtttcttctttttcttcttcatgttcGCCTTCCAAGTGGTGGTGTACATCATTCAGAGCGTCGGCATCCCCAGGTGGGGAAACAGTGGTTGGATCTCCTCCATCGCCATGCTCGGAAGCAATCTCACAGTCGCTGTGTTCATGATGGTTGTGGCCGGATTCTTCACAGTCAACGCAGTGCTCGCAGTCATCTTACTGAAAATGGTCCACGGTAAGTACAGGAGAACAGGTGCTAGTTTCCAGAAGGCGCAGCAGGAGTTCTCTGAGGGTGTAGTGAGCAACAGAACGTTCCAGACTGCTGCGGCCACCGCCGCCACCTCGGCTGCTCGCGGGGCCTTTCAGTAACACAGTGCATTCTGACCTGTCCATCACTCATCCCACAAAACATCACCTCTCCTGTGTGTTTAAGACACTCGTCTGCTTCAGTTCCTGAAGGAACACACTGATATGGTTATTGAAGGAACGTTCCATAGGGACACTGTAGAGGTCAGTAGTGAGCAAAACCTGTATCGGATCATTCTTCTTAAATTAATGCTGATTTTTAGTTATTGCACATGAACACTTTCTTGGTTTTCTTGGTTATCCCTTTGAAATGATTTAAAGCTTTTTTCCTCTGCCAGTGGTACCAATTAGTGGTAGataatatgatgaaaaattgtATCACGATTCACAAAGACATTCCTACGAAACACGATATGCATCAGGATATATAGTTTTGCAAACAAACCGCTAGCCAAACAATAGTATAGAATACTTAATTTCTTAAGTAAATTAtacttattcattttcattaaaaaaaagcaaaatatttaacactgaaaatgagaaaattgaaaaaatctgtaaacattttaacagttttaaagattaagtacaagATACATCAAATAAGCTGCTTCCAGTCAACTTGTAATcacaaaaaatgaatgaaaagatctaacaatatccacaatatctcagaaattatgtgacataatttattacGATCTTATATCGTCGTATTGTCCAGCCCTAGTACCAGTGGtgtaaaggcaaaaaaaaatcaaatgtacacaattGTCCACTTTCCCCAGCACATCTACATTTATGGaatttagcagacacccttatccagagtgacgtAGTAGtttttatcaaaaacacatcctcatgctagttcactagatCAGATCCTGTGTGAAGAAAACATCCGAGTTTTTAGAAAAAAGACCAGTAGAAACTCAGTAATGTTTTTCCCCagttttctccccaatttggtcacctgccaatccCCATCCCCCGgccagctctcctctatcatacaGCTGCTACCAGCAGGGGGGGTGAAGAATAGTGCGTGattcctccgagacacatgcAGCCAGCCAAACACATCGTTTCACACTGCTGCTCATACAGTGTCACatggcagcgtaacacacttggaggaaaacGCTGTCcgccctcttctacatacatggGCTCACAGATACatacaattggctagtgtcgctgtgattgacaggggagagtaTGCCTTCTCTTcgacccagagagcacggctaATTTGCTGTCTAGGCTTTTGGCCACGGACGACTGTGGCATcgctgggattcaaactcgtgaTCACTCCTGATGCTTTTCTGTTACGCCACTTCAGGGACCCCACATTGATTATTTAACGATGgttttgtataaaaatgttcCAGACATCATCCAGGGACACTAATCCTGTCCGAATAGGGCTTACGATACATTTTTTAGGATGATTCAAGTGGATAAAATTGTTTTGTAAATGCAATggcagaaatgaacaaaactttGCACTGTTACAGAAATCTTTAAgtgcataattttttaaaatatgtcgCTGCTACATTGGTATTCTTGATGAAATACATGCATGGAAACATTGTGTATGTATGGTGAAGGTAAATAGTGATAAAACAGGGCAAGCGCAGGTAAAACTACTTCTATGCAATACAAACTATTTCTCGCACCTCAGTGGAAACAAACTATGTTATTATGCAGTTCGCTGAAAACCGTGATACACAGATCACACGCAGACGCTGGAGAGACTGTTGCTTTGGTTATGTACATTCGGATCTCATTAATGCAGGATTTCGTTTTCCACTTTAGTTACATTTTACCCTTGTGCTGTCATGTTATAGATGTTCTATTCTTGGCGCAATTTTGATCACAAAtgtcttttttcagtgttctcaaattattattattatcgaaCAAAGTCATATAGTCtgtgctttattttaatgtttccaGTGTGGAATGGGATATTTTATGTACAGATATTATTTAAGCTATTTGAAGTCATCGTATCATTTTTCTGATTATGTGGATATGAAGTTTATTGTGTAGTGAAATATTTTATCACATTAATTGGGTGTAAAATAAAAgtggtttatatttta

Function

NR:

description
PREDICTED: secretory carrier-associated membrane protein 2

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930860.2 True 3277 mRNA 0.43 9 4907933 4919259

Neighbor

gene id symbol gene type direction distance location
neo1a LOC108271025,LOC108434571 coding downstream 46305 4738083 ~ 4861628 (-)
pacsin3 pacsin3,LOC107686823,LOC107679714 coding downstream 219355 4656606 ~ 4688578 (-)
zgc:153993 LOC108270970,LOC105889048 coding downstream 310160 4587003 ~ 4597773 (-)
fgf3 fgf3 coding downstream 366821 4536922 ~ 4541112 (-)
fgf4 fgf4,LOC107686874,LOC107594497,LOC107727109,LOC107584753,LOC107679733 coding downstream 378206 4524986 ~ 4529727 (-)
myo9aa myo9a coding upstream 4104 4923363 ~ 5032894 (-)
gramd2aa gramd2,LOC108270961,LOC107748265,LOC106562775 coding upstream 128092 5047351 ~ 5074302 (-)
znf609b LOC108271255,LOC108434576,LOC107679726,LOC107748266,LOC107738902 coding upstream 162393 5081652 ~ 5133550 (-)
chrna7a chrna7,LOC108270560,LOC108434558,LOC107748270,LOC107679711,LOC107686877 coding upstream 279884 5199143 ~ 5220239 (-)
LOC113536575 adamts7 coding upstream 310067 5229326 ~ 5302351 (-)
G176029 NA non-coding downstream 60792 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 67240 4839988 ~ 4840693 (-)
G176015 NA non-coding downstream 171517 4732382 ~ 4736416 (-)
G175967 NA non-coding downstream 275148 4630348 ~ 4632785 (-)
G175963 NA non-coding downstream 284946 4622128 ~ 4622987 (-)
G176336 NA non-coding upstream 190855 5110114 ~ 5113268 (-)
G176354 NA non-coding upstream 385355 5304614 ~ 5407099 (-)
G176556 NA non-coding upstream 712567 5631826 ~ 5715020 (-)
G176817 NA non-coding upstream 1163569 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 1252939 6172198 ~ 6176354 (-)
lto1 oraov1 other downstream 403604 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 911480 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 998040 3851847 ~ 3909893 (-)
serf2 NA other downstream 1325946 3549865 ~ 3581987 (-)
G176307 NA other upstream 160558 5079817 ~ 5080895 (-)
trip4 trip4 other upstream 220351 5139610 ~ 5196818 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 777121 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 1937496 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 2561163 7480422 ~ 7484117 (-)

Expression


Co-expression Network