LOC113536732 (LOC108270943,LOC108444425)


Basic Information

Item Value
gene id LOC113536732
gene name LOC108270943,LOC108444425
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 961369 ~ 965388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930863.2
AGACTTCCCCGCGGCCATCTTTGCGTAAGAGGAATATTAGCGTGTGGCGCTGCAGAGACACCGCCGCTCCTGCAGGGGGCAGTACAGAGCGGCGCAGTCACAGCGCTCAGAACAAAACCAACTCTCAAATGGCGGCACGAAAACGAAGCATAGTGTGGTCATTTTTCCAAGCGGAGGACGATAAAAGAGTATTATGTCTCCTTTGTATGAAAACGGTTTTATATTTCGGTCACACGACCAACATGCTTCGCCATTTACGAGCGAAACATCCGAATGATTTCTCCGCTTTGGACAAAAGAAAATCCACATCGGGAAAAAGCGCATCCAACCATAATAACGGCTGTGTAGAAGTGACCGTCATGATGGACGAGCAGCAGGTGGAAGTCCCGGCCGAGGTCGGAGACGCCGAGATGGACGGCGCGATCCGCGGAATCCTGTGCGCCGCGGCGGGAGAAGCGGCGACGGAAGGAGAGGCGTCCGGGTGCGAAGGCGAGGGCAGAGGGACTCAGGAAGGCAGCCCCGCCCCGAACCAAACCCCGACCTCGCGCAAGTGGAGCGCGGTGTGGGTTCATTACCGCAAAGTGGACCAGGAGAAGAAGGCGCTGTGTTTGCTGTGCATGGAGAAGATCCAGCACCAGAGCAGCACCAGCAACCTCATCAGACACCTGCAGAACAAGCACCCGGCCGAGTACGCCCAGCTCGAGGAGCACTCGCAGAAACGACCCCCCAAACGCAAGAACGAGGATCCCGATTACGTCCCTGCGACCTCGCCCAAAACTCGCAGCGTTCCCGCCGGCCGCATCGTTCCGTCCCCGCTCAGCAGCAGCCTAACAGTAGTCGACTGGAGCGACGGGCGGCGGATCCTGGAGCGCGAGCGCGAGCTGACGGAGGCGTTGAGACGCGTGCAGCAGGAAGAGGGACGGAGTTTGCAGCAGCAGAGGGATTTAATGCAGCAGATCCGAGAGCTGGACGCGGAACGGCGAGCGCTTCAGAACCAGAAACGCGAGCAGGAGGACGAACATCACAGACTGAAGAGGGAAAAGGAGGAGCTGGAAACCGTCAGGATGgagctccagaaggaaaaagaagaactccagaaggagagggaggagctgtTTAAGGCCAAGGAGGAGTTTCGGAAAGAGAGGGAGGATTTGGAGAGACAAAGACAGGAGATGCATAGAGAGGGACACATACAGGGCCAAGTGTCCGAGTTTTACAACTGTTGATTCGTCTTAACGCTTCACTGTCCATGCAGGATCTTTCCAGttctttgtaatttttaaaatgtttagtgaacGTAGCTGACAGATTTCAttactttgccttttttttttgtttcccctCTCTGGACGTACTCCATGATGAGAcctaatgatgatgatgatgatgatgatgaaggtgaggGAGGAGATTTTCCTGTAAACGATGCATTTCACTGTGTAATTTTTAACATTGTAAGTTCTGCAGAACTCAATACAGCgttctcacacactcctgtcacCGAGCCGTCCTTTTTCTAATCGCATCAGTGTCTCTCCGGTGTTACACTCTGAAACCTGACAGtagcctctgtctctctctctctcgcactgtataaagtattggcacccctctgcCCCATCCGGCGGTGGACCGGGACCCCTGAGCGGATCTGATTTTACTACATCGGTGTTCCGGTtgagttttgtttcatttcctcGTTAATGATCTGACCTTTCCATGACCCCATCTTTCAGTAAAAACGTCTGTATTCGAATTGTATTCGACTAAACCTGAAATTAAGCATCACTAAAAAAGATCTTAACTAAATTGTGAATTGTATTTCCTGAATATTGTTACACCTAGATTTACTattactattgttattattattattattattattattattattattattagccttttgtgtgtaattgtcCCACAGGGTAgcaagttattattttttattattattattataattattattattatttttttaatctttggttcattttataaatgaaacacaaagCGAGGCTTTTAAAAGTTGACCGGGACACGAGATCACTCGTCTCTCGTGTAGGAGAAATGTTTTATGTTCATAATGTGTATccattattttatgcataaagcataaaatatacaactgttttttaaaaaaaacatccaattgTATTTTCAAAAGTAGCAGAAATGAattctaattattataatttttaaaaaaaaaatcagcttggCCCTGGTAATATTGAAACTATAAATCCTATTCCTATAAATCCTGAACTACATGCATGTTCACtcctgattaaataaaaacattttagaaacattttcatCGTACAAATCATTAAATCCCAACAAACTCAGGGGTTAATTTctagttttaaatataaataaaggcCACATGAGCCCTGATTATGAGGTTAAATATGAATTCATGAATAAATAGGCGTGTGTTTGAAGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930863.2 True 2454 mRNA 0.45 3 961369 965388

Neighbor

gene id symbol gene type direction distance location
gfod2 gfod2,LOC108444435,LOC107750644,LOC107674467,LOC107741392 coding upstream 4060 949766 ~ 957309 (+)
cenpt cenpt coding upstream 13065 936344 ~ 948304 (+)
cog4 gfod2,cog4,LOC107741389,LOC107700400,LOC107750533,LOC107674430 coding upstream 31267 913040 ~ 930102 (+)
dnaaf1 NA coding upstream 52934 896147 ~ 908435 (+)
dok4 dok4,LOC106587148 coding upstream 66921 852307 ~ 894448 (+)
vrk3 LOC108270942 coding downstream 587 965975 ~ 976359 (+)
acd LOC108271006 coding downstream 11855 977243 ~ 987383 (+)
ogfod1 NA coding downstream 22805 988193 ~ 999215 (+)
LOC113536571 gnao1,LOC108271008,LOC108444429,LOC108264367,LOC103374184 coding downstream 41417 1006805 ~ 1024473 (+)
LOC113536635 tpm1,LOC103040917,LOC107739081 coding downstream 69172 1034560 ~ 1043087 (+)
G173854 NA non-coding upstream 51052 909639 ~ 910317 (+)
G173823 NA non-coding upstream 141229 764340 ~ 820140 (+)
G173821 NA non-coding upstream 171112 762204 ~ 790257 (+)
G173805 NA non-coding upstream 190097 691296 ~ 771272 (+)
G173761 NA non-coding upstream 221862 687350 ~ 739507 (+)
G173865 NA non-coding downstream 59099 1024487 ~ 1025616 (+)
G173880 NA non-coding downstream 168630 1134018 ~ 1134612 (+)
G173893 LOC103139438,LOC106905931 non-coding downstream 411816 1377204 ~ 1432962 (+)
G174018 NA non-coding downstream 652845 1618233 ~ 1618745 (+)
G174023 NA non-coding downstream 663456 1628844 ~ 1629199 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 138646 790374 ~ 822723 (+)
G173819 NA other upstream 218659 742021 ~ 742710 (+)
G173748 NA other upstream 391043 568813 ~ 570326 (+)
G173898 NA other downstream 396394 1361782 ~ 1364931 (+)
G174536 NA other downstream 1093582 2058970 ~ 2060283 (+)
G174546 NA other downstream 1112689 2078077 ~ 2078627 (+)
pth1b NA other downstream 2680355 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 2681967 3647355 ~ 3658290 (+)

Expression


Co-expression Network