galnt18b (galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200)


Basic Information

Item Value
gene id galnt18b
gene name galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6358137 ~ 6461826 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930872.2
gagagctcgcgagagagagagagagagagagagagctcgcGATGGAAGACGCGCGCGTACATGTCGGAACAGGAGGAGAGCGGCCGTCCGCGTGAGGGAGcgaaagaaaataaacacaagggggaaaaaaaaaataaataaagactcgtaaaagaaaaaaaaaacattcagattaaaagcATGCGGATAGACAGAAGCAGGTCACCTTGAGGAATGGTACTTTATTAAGCGAGGagggaagaagaaggagaagaagaaggagaaggagaagcagAGGGAGGCGGTTCCGCTGGTCCGCGGCGCACCGGCTGCTGAGGCGCTCGCGCTGCACGCAGGCATGTCGGCATGGCGTGCACCAGGAGAACCAAAACTTTGGTGTCGACGTGTGTGATACTGAGCGGCATGACCAACATAGTGTGTCTGCTCTACGTCGGATGGGTCACTAACTACATAGCCAGTGTGTATATTAAAGTGCCGGTGCCTGTCCCAGCCAGGAAGTTGGAGGGCGACAAGAAGGGCGAAACTCTGCGGATTATAGAGCGACTCGACCGGCTGGAAAATGTCGTGAACCAGCACATACAAGAAACTCCGCTGAAATCAGACAGTAATCAGGAGGACCGATCATTCTCAGACTCCTCGCTCTTCAGCCACTGGGGTCAGGATCTGAACTCCGAGAGTCGCCGCGTCGCCCTCAAGATGTTTCAGTACTACGGTTACAACGGCTACCTCAGTGACCGCCTGCCCATGGACCGAGCCATCCCCGACTACAGACCTGAAGGGTGTAAGAACATGTCGTACCCCTCAAACCTGCCGCAGGTCAGCATCGTGTTCATCTTCGTCAACGAGGCGCTATCCGTCATCCTGCGCTCCATCCACTCGGCCATGAGCAAAACCCCCAGCCACCTCCTCAAAGAGATCATACTGGTGGACGATAACAGCAGCAGCGaggAGTTGAAGGAGAAGCTGCAGGACTTTGTAGAAGAGACAAACGCTAAACGTCCAGGCTTTATAAAGATGGTGCGGCACCGTAAGCAGGAGGGTCTGATCCGGTCCCGTGTGAGCGGCTGGAGGGCTGCGACTGCCCCCGTGGTGGCCCTGTTCGACGCCCACGTGGAGTTTAACACTGGCTGGGCCGAGCCGATTCTCCAGAGGATCAAGGAGGACCGGACGCGGATCATCTCACCATCATTTGACAACATTAAATACGACACATTTGAGGTGGAGGAGTATCCGCTGTCTGCTCAGGGCTTCGACTGGGAGCTGTGGTGTCGCTACCTGAACCCACCCAAGTCCTGGTGGAACCTGAACAACACCACCTCTCCAATCAGGAGTcccgctctgattggctgcttcGTCGCAGACAGGAAGTATTTTGAGGAGATCGGGCTGCTGGACGAAGGCTTGGAAATCTACGGCGGTGAGAACGTGGAGCTGGGTGTCAGGgtgtggcAGTGTGGTGGCAGTGTGGAGGTTCTGCCCTGTGCCCGTATCGCCCATATCGAGCGCGCCCACAAGCCGTACACCGAGGACCTGACTACACACGTGCGCCGTAACGCCCTGAGAGTGGCCGAGGTGTGGATGGACGAGTTTAAGAGCCACGTCTACATGGCCTGGAACGTTCCGCAGGAGgactcAGGTATAGACATTGGCGATATCTCCGAGAGGAAAGCCCTGAGGAAAAGGCTGCAGTGTAAGACGTTCAGGTGGTACCTGGTGAACATCTACCCCGAGATGAGGATGTACACAGACACCATCGCTTATGGAGTGCTGAGGAACTCTCTGAAGAGCGAGCTGTGTCTGGATCAGGGGCCGGACACCGACAACGTCCCCATCCTGTACCTCTGCCACGGGATGACTCCACAGAACGTGTACTACAGCAGCACGCAGCAGCTCCACGTGGGCGTGCTCAGCCCCACCATCGACGACGACGACAACAAGTGCCTGGTGGACGTGAACGGGCGGCCGAGGCTGATCGAGTGCAGCTATGCCGCGGCCAAGCGCATGAAGCTGCACTGGCTTTTCACTCAGagaGGCTCCAtccaaaacaggaagtcaaagCGATGCCTTGAGCTTGTGGAGAGCAATGAAAGTGAGTTTGGCTTTGAGCTCACCGTCCAGAAATGCACCGGACAGAAATGGACTATCACGAGTGTACTGCCTGGAAGCACCTTGTAACAGGACGCTGAGAGAGTCGAGGACACTGGACAGCATCGAGAAATCTGGATAATGTCGAGGAGACCATGACACACCTGGATGTCTCTATTTGAACTTGACATCGTAtgataaatgttaaacatttttatgcCTAGCTACTGTACATGTGCATACGGATCAGCCACGTCTGGCAGATTGGACAGTGGAATATAGGtacatttatctaatattttcttattataagattattatataCCAAATATGATATAGTTAAGCCTATTTATGGATATTGTCACTCATTTCAAGCTATttatcagttattattattcaagCTGTTTAccatttactatttattatttatcaagaTGCACAAAAAATCGTATTTCATCTTCGATTTCGATCCAATTGCTATTCCTCTTTATTCGCTGTGACCAATGAGTGTAGAGAGGTTGTACCACATGACCTCATACACTTACCCGAATCATGGAGAGtctagaaaaagagaaaaaggggaaaaacagtGTCAGAATGCcgagtgaattttaaaatgacccaAAAGCCCACTTGTAGTGAGAAGAGGAACAAATTAGTccataatattattatgataataTGAAATCATGTGAAATATTAATGAGTCACTGAATCTTAAATTCCAAATAACTAAAACAAACAGTgattaaatgtgtgaaatgGACAAACTGACCAGTGACCAGTAACACATTATATGTAGAGCATGTTTACTAAAGACAGATTTTCACCTGTAAGTAAGTGATAAGTCTATTTAATAGTAA

Function

symbol description
galnt18b Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in brain; notochord; otic vesicle; sensory system; and ventral fin fold. Orthologous to human GALNT18 (polypeptide N-acetylgalactosaminyltransferase 18).
galnt18 Enables polypeptide N-acetylgalactosaminyltransferase activity. Involved in protein O-linked glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus.

NR:

description
PREDICTED: polypeptide N-acetylgalactosaminyltransferase 18

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930872.2 True 2948 mRNA 0.50 11 6358137 6461826

Neighbor

gene id symbol gene type direction distance location
LOC113536569 LOC108271057,LOC108442067,LOC107741992,LOC107680499,LOC107657964 coding downstream 61261 6227094 ~ 6296876 (-)
LOC113536415 acyp2,LOC105896825 coding downstream 248765 6100029 ~ 6109372 (-)
LOC113536414 c10h2orf73 coding downstream 263359 6085672 ~ 6094778 (-)
sptbn1 sptbn1,LOC108270927,LOC108442064 coding downstream 273330 6001691 ~ 6084807 (-)
eml6 eml6,LOC107597181 coding downstream 360000 5949048 ~ 5998137 (-)
ctr9 ctr9 coding upstream 93893 6555719 ~ 6567757 (-)
ampd3a ampd3,ampd3a,LOC108433033 coding upstream 160078 6621904 ~ 6643123 (-)
adma adm coding upstream 186922 6648748 ~ 6651135 (-)
swap70a LOC108271193 coding upstream 332713 6794539 ~ 6807030 (-)
LOC113536768 LOC108270562 coding upstream 347997 6809823 ~ 6816713 (-)
G176938 NA non-coding downstream 50 6357574 ~ 6358087 (-)
G176855 NA non-coding downstream 96897 6260797 ~ 6261240 (-)
G176832 NA non-coding downstream 169849 6184335 ~ 6188288 (-)
G176816 LOC108271104 non-coding downstream 181783 6172198 ~ 6176354 (-)
G176817 NA non-coding downstream 190335 6082828 ~ 6167802 (-)
G176990 NA non-coding upstream 82173 6543999 ~ 6545070 (-)
G176992 eif4g2,LOC108433007 non-coding upstream 89088 6550914 ~ 6551262 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding upstream 89499 6551325 ~ 6551582 (-)
LOC117598400 NA non-coding upstream 117178 6579004 ~ 6589296 (-)
G177097 NA non-coding upstream 276495 6738321 ~ 6738608 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 649833 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1161319 5139610 ~ 5196818 (-)
G176307 NA other downstream 1277242 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1853808 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2361684 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 394929 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1018596 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1118608 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1214090 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1782823 8244649 ~ 8244721 (-)

Expression


Co-expression Network