nmur1a (LOC108270657)


Basic Information

Item Value
gene id nmur1a
gene name LOC108270657
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10623289 ~ 10635357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930895.2
GTGGGATTTATTTGTCCTCAGTGTAGATACTTGTCCTCGCTGCTCACGCTGTATTAATGATCAGGTTTTAACTCCACTATCAGGTTCAGTTGATCATGTCCGAAACAAACTGTTCATCTGCGGTGCTGAGCTGTGTTCAGGAGTTCCTGTGCAACTCCACCTTCCCGGTAAACCTGAGTGACATGGAGATGGAGGATTACTGCCTGAGCCTGGATGATTACCTGACGAAGTACCTGGGTCCTCGGCGCTCCCCCGTCTTCCTGCCTGTGTGCATCACTTACATGCTGATCTTCAGTGTGGGAGCAGTGGGGAACACTCTCACCTGCGCTGTGATCACACGCCACCCAGTCATGCGCACACCCACCAACTTCTACCTGTTCAGTCTGGCTGTGTCCGACCTGCTGGTGCTCATCCTTGGCATGCCGCTGGAGCTGTACGAACTGTGGAGTAACTACCCCTTCCTGCTCGGGAAGAGCGGCTGCTACTTCAAAACCTTCCTGTTTGAGACGGTGTGTTTCGCCTCAGTGTTGAATGTGACGGCGCTCAGTGTGGAGCGCTACATCGCCGTCGTGCACCCACTGAGGGCGAAATGTGTGGTGACACGTGCCCATGCCAAGCGTGTGATCATCTGTGTTTGGATTGCATCTGTGATTTGTGCGCTGCCCAATGCGAGCCTGCATGGAATTTTCACACTGCCAAAACCCCGTGGGAGTGGAGAGGGGCGCGAGCTGAGTTCAGCTATGTGCACGCTGGTGAAACCACGCTGGATCTATAACCTGATCATCCAGATCAGCACACTCATCTTTTTCATCCTGCCCATGATGACAATCAGCACACTCTATCTGCTCATCGGCATCCAGCTGAAGAGGGAGAAGATGCTGCAGGCTAAAGCTGAGTGTGAGAACAATGGCCACAGAAACGCTAGTGTGCGCACTCAACAACCACGAACACGAAGACAACAGGTCACCAAGATGCTGTttgtGTTGGTGGTGATGTTCGGGATCTGCTGGGCACCGTTTCACACAGATCGCCTCATGTGGAGTTTCATGGATGAGTTCTCTGGTGTGGAGATGTTTCGGGTGTTTGAGTATGTCCACGTCTTCTCGGGCGTGTTCTTCTACCTCAGCTCGGCCGTGAACCCCGTGCTCTACAACCTCATGTCCACCCGCTTCCGTGAGATGTTCAAGGACGTGATGTGCGTTCACAAACGAGGCTCTGCCCACAGGAAGTACTCTCTGAGCATGACACGAGCCACTGTGCGCAGTGTCCTGAGTGATGTTGCTAATGGCAATGCTGCTGCCGATGGAGATTATGAGTTTTATGAATGTCATGAAAACGAGACCACATGTGACTTAgggaaagaaacaaacacactttGACTTggaggtgtgtgttggtgttatGGACATGTATATGCAGGTGTATTTAAACAATACAATGATGTGTACATTTGTGTCCAATCAGAGTCTCTCTTAATGTTTCTGTGAACTTTCTTATGGAAGAAAAAATCGGCTTAGTGAAATGtaattatgaatttaaaaaatgaaatcatgtcTGGGCCGTTACAGCTGACTCACTAGCTAAgggaatttgtttttaaaaaattaaaatattctacTTGTaactgttttaattatttttacaatgcACACCATTGCTATGTtatcttgtgt

Function

NR:

description
PREDICTED: neuromedin-U receptor 1-like

GO: NA

KEGG:

id description
K05052 NMUR1; neuromedin U receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930895.2 True 1673 mRNA 0.49 4 10623289 10635357

Neighbor

gene id symbol gene type direction distance location
LOC113536600 NA coding downstream 26051 10594672 ~ 10597238 (-)
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding downstream 30325 10580693 ~ 10592964 (-)
rnf13 rnf13 coding downstream 68091 10544767 ~ 10555198 (-)
LOC113536710 NA coding downstream 92918 10527033 ~ 10530371 (-)
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding downstream 170518 10258307 ~ 10452771 (-)
hykk.2 hykk coding upstream 3664 10639021 ~ 10644194 (-)
mfsd8l1 LOC108271204 coding upstream 460770 11096127 ~ 11108565 (-)
polr2h polr2h coding upstream 475188 11110545 ~ 11113589 (-)
LOC113536755 acap2 coding upstream 560682 11196039 ~ 11237809 (-)
psmd1 psmd1 coding upstream 793248 11428605 ~ 11475968 (-)
G179487 NA non-coding downstream 43829 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 47257 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 59837 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 108088 10514696 ~ 10515201 (-)
G179466 NA non-coding downstream 111265 10511621 ~ 10512024 (-)
G179727 NA non-coding upstream 559080 11194437 ~ 11195673 (-)
G179827 ttc14 non-coding upstream 923562 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 1092920 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 1360813 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 1417924 12053281 ~ 12054861 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 99710 10486735 ~ 10523579 (-)
G179035 NA other downstream 808064 9813892 ~ 9815225 (-)
G178942 NA other downstream 1099959 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 1216071 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 1287103 9320966 ~ 9336186 (-)
nppc anfc4 other upstream 608490 11243847 ~ 11246310 (-)
G179803 ncl other upstream 773735 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 856350 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 875489 11510846 ~ 11518394 (-)
LOC117598402 NA other upstream 892600 11527957 ~ 11532033 (-)

Expression


Co-expression Network