mespba (LOC108270618,LOC107714027,LOC107654092,LOC107581863,LOC107706936,LOC107568918)


Basic Information

Item Value
gene id mespba
gene name LOC108270618,LOC107714027,LOC107654092,LOC107581863,LOC107706936,LOC107568918
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7809390 ~ 7810679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930903.2
TTCCAGCATAAAAACCTCCAGCTTCATTTGCTCTCCAATTTTCCAGCCTACAAACCTCTAGCCTGCTTCTTCtgcttttatttgcttttcaaCTCTCAAGTATGGACAGCTCCAGTGTCATCCACCATCCTCACAGCCGGTGGAGCAGCCCAAGCTCTGACTCTGAGCTCTACAGCGTGTCCTCCCCTGAGACTGTCTCTCCAGCACCTTCCATGGACCTCAACTGCTCTCCATCTTACCAACCCAAGCTCACCAAGCTTCACAAAGCCACCTCCAGACTGACCAAAACGCCTGGTTCTCCTTCAGGCCTTGCCAGGAGGACGCGAAGATCTAGGCTGAAGAACCCAAGCGAGCAGCGTCAGAATGCCAGCGAGAAAGAGAAGCTCAGGATGAGGGACCTAACAAAAGCTCTGCACCATCTCAGGACCTACCTGCCTCCATCAGTGGCTCCTGTCGGACAGACGCTGACCAAGATCGAGACTCTGCGCCTCACCATCCGCTATATCTCGTACCTGTCAGCTCAGCTCGGGCTCAGTGAAGAATAtctgtctcagaggaagcagaTGAGCAATGGGGATGGATGGAGAAGTTCTCCAGAGATTCTGGGCTATTTTCAGTGCAGATCTACAAGCACAGAGTGGGGAGAAGGACAAGTATATGGTGAATATGCAGAACAGCATCAGACTGCGAGCAGTTTGGAGTACTCAGAGCAGGGAATGGATATGAGCCAGTACAGCACACAGCTCTCAGAGCCAAAGACGGATCAGATCTACAGCTCGGAGACAAACACATTTCAGCAACAGCAGTGTGCCCAGTTCACACAGTCGTGCCAGGTTTACGGCTACCAGCTTGTACCTCCGGCCTTTTGGAGCTAAACACTGCAATACTGTCTACTACCAAATCCACTGGCACACTGAAACTGATGGACTCCTCCATGTTGTGAAATCAAACAAGCTGTCCATTACAATGAATGTCTAAAAATGTAGCTTTAGATTCTAGATTTtagattataatttaattttatactaatttatataaatatatgtatg

Function

NR:

description
PREDICTED: mesoderm posterior protein 1-like

GO: NA

KEGG:

id description
K09076 MESP; mesoderm posterior

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930903.2 True 1049 mRNA 0.48 2 7809390 7810679

Neighbor

gene id symbol gene type direction distance location
mespaa mespbb,LOC108270617,LOC106024706 coding downstream 7838 7799665 ~ 7801552 (-)
lrrc28 lrrc28,LOC107662304,LOC107706938,LOC107690794 coding downstream 137729 7659046 ~ 7671661 (-)
LOC113536417 LOC108271125 coding downstream 152436 7625496 ~ 7656954 (-)
mctp2b LOC108271124,LOC108428479 coding downstream 185917 7595015 ~ 7623473 (-)
ero1b ero1b coding downstream 231550 7564380 ~ 7577840 (-)
sv2ba sv2ba,LOC108270522,LOC108428484,LOC107674753,LOC107568919 coding upstream 7557 7818236 ~ 7845027 (-)
ntrk3b ntrk3,ntrk3b,LOC107733954 coding upstream 181325 7992004 ~ 8124785 (-)
mrpl46 mrpl46 coding upstream 362582 8173261 ~ 8180651 (-)
trnar-acg_4 NA coding upstream 431427 8242106 ~ 8242178 (-)
trnar-acg_5 NA coding upstream 432052 8242731 ~ 8242803 (-)
G177729 NA non-coding downstream 54372 7707511 ~ 7755018 (-)
G177733 NA non-coding downstream 58584 7728913 ~ 7750806 (-)
G177691 NA non-coding downstream 257640 7551522 ~ 7551750 (-)
G177682 NA non-coding downstream 300202 7508851 ~ 7509188 (-)
G177562 NA non-coding downstream 330002 7479158 ~ 7479388 (-)
G177807 NA non-coding upstream 115614 7926293 ~ 7927058 (-)
LOC113536653 NA non-coding upstream 460428 8271107 ~ 8275360 (-)
G178057 NA non-coding upstream 512940 8323619 ~ 8324164 (-)
G178208 NA non-coding upstream 711122 8521801 ~ 8522085 (-)
G178227 NA non-coding upstream 782507 8593186 ~ 8593405 (-)
igf1rb LOC108271091 other downstream 44960 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 220575 7580434 ~ 7588815 (-)
si:dkey-56d12.4 LOC108270721 other downstream 325273 7480422 ~ 7484117 (-)
LOC113536608 LOC108270551 other downstream 948042 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 2101086 5696380 ~ 5708304 (-)
trnar-ucg_7 NA other upstream 433970 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 436024 8246703 ~ 8246775 (-)
trnar-acg_8 NA other upstream 437011 8247690 ~ 8247762 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 1172503 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 1510287 9320966 ~ 9336186 (-)

Expression


Co-expression Network