LOC113536772 (LOC108270937,LOC108412780,LOC107730181,LOC107561442,LOC562097,LOC107663023,LOC106562562,LOC108250636)


Basic Information

Item Value
gene id LOC113536772
gene name LOC108270937,LOC108412780,LOC107730181,LOC107561442,LOC562097,LOC107663023,LOC106562562,LOC108250636
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5407596 ~ 5418681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930910.2
GCGTCATTTGTTCCAACGCAATCACAGCCGTCCGCTAACGCGCAGCTCGCGCTGCGGTCCGTCCCGTTATTCCTTCCTCCGTACCGGAAGTTTCTCCCGCCGCTGTTGATATCTATTCATGGCCAGGAACCATGAATTAACCGAGCTTTATTCACTGGCCGTATCAAGAAAACGCTGCGCGGTGTGCAGCGTGTCCTGACTGAGGAGTGCTTGCTGCGATGGTGCTAGATCTGAGTGAGAACTGTGTGGAGAGGGCTGATGGGGAGGACATGGAGGCCACTCGGGAAGATTTTCAAGAGCCAGAGCCCAATATAGAGAAACCCAAACCGGTCCCGGTCCGAGCAAGAATCAGCAATATCACCCAGAGGGACAGGCTGCACCACAACGGGCCCTGTAGCACACCAATGGAGCAGAGGGTGCAAGGAGCAGAAGGAGGAAATGGAAAAACTGAGAAATTGGACTTACCCATGAAGAGGACAGAACTTCGAAGGCCACTCAGTCTGGAGATCAAACCGCAGCGTGTTAAGGcgaataatcagtgtgaaaggAAAGTGGTGCAGCCTCCATGGCGATACGGTGCACCCTCTCCTCCCACGCGAAGCCTCACAAGCCCCAGTTTGGGACCCGGAGGCTGGATGCGGCGTAGTGAAAGTACATGTACTGTAAACTCCACGGTGCAACCTAGAGCCAGCAGAGGGCGAATGCGGCCGGCTACATCCCTGCCGCACATTGCCCGGGGGCTTGTGGCTGCACCAGTACCCACACCTTCTACACCACGTGGGCCCTGTTTACTCGTGGCTCTGAGGCCCACAAATCTCGAACATGAGCGTCAGACCTTTTTCCAGTCGGACTATAAGTACGAGCCCCAGTTTGAGTACGCGTCACCCGAGCCTGTTAGTGTCCTGGAGAAGTATAAAGAAGGATCTGGACTCTTTCTTTCCCAGGCAGTTAAAATCATGGAGTGTGTCCTGAGGAAGTTCGGCACCTACGAGAACTTTGAAGAAGTCACCGGAGGAAGTGTGTTGCCCAAGAGTCGAGTGTGGGCGACGGTGCGCAAGTACTTACAGAAAGAGGGCTGTGTGggtgagGTGGTGGTGTCTCTGTCTGATGAGCTCCTGTCTCAGGCCGTGATGATGGTGGAGAGCTGCAGGCCGACCTTAACCATAAACCTGTCAGGAGCACGGCAGCACTGGCTGGAAGGGATGCTAAGACACGAGATCGGTACACATTACTTACGCGGCGTGAATAACAGCATGCAGCCGTGGGCCACTGCCGTCGGAAGGAAGCAGTTTGGACTGAAGCCAGCCAATCCTACAGAGGAGGGACTGGCCAGCATTCACAGCGTGCTGTTGCGGAAGCAGCCCTTCTTGTGGCGAGCTGCTCTCCTCTACTACACCGTGTACCATGCAGCCAACATGAGCTTCAGCCAACTGTTCAGCTATATCGCTCGCTTCGTCCAGGACCCCGCGGTACGCTGGGAGTACTGCCTCCGTGCCAAACGGGGACAAACGGACACCTCAAAACCAGGCTGTTTCAGTAAAGATCAAGTCTACCTGGATGGGATCCTAAGGATTTTACGCCACAGGAGAAACATCGATTTCAAGATGTTAACCTCGCTGGGCAAgGTGTCCTATGAAGATGTGGAAAGGCTTCGTCATCTTGCGGTCCTGCGGAGAACCAGGATCCCGCACTTCATGCAAGACCAAGAACGTTACCTGCAACAGCTGGACCACATCGTCGTGACTAATGAACTGAACGATGCTGAGCTACAAGAGCTCATTCCATGAGGATGAGGGTTTGAATATACAGGACCTTTTTGATTATTTGCTCATTTCCAGGTGCGActcagtaaaaagaaaaataggatTATTGATTTAAAGCCTGGATTATAATTTTCAGCATCTGTGAAAATTCACACAGGACAAAATCAGTTTTAATCAAGTGATTTACTCACTTATTCATATTGTTtcaatgttaacattttttccAACAGTACCAACACATACCAACATGTGCGTTTACAGTTACAGAGATTATCACCAATTTCTCTGAACCAACAATATATCAGACATTTGGAACCTCtgaaatattatacaaatattgTAGCCTAATTATTGGAGGTCAGTGGAAGATCAAGGGTATCTTCATTACTTTTTATAATTAAGTTGCCATGATATTTCAAAGAAACATGTAGACAAGCACTCAAGTAGCAATTCGCTGATTTCTATACACACTTCTTTTACCTCGTGTTCTGCGATAAGCACTGCATTTTATTGTTGTTCCTGTGATGCTGTATTAGTCACTGCTAGAGCTTTTTAAACcactgtcagtatttatgcaagtatttattctttttttttttttacctcatgtATTCATAATGAAAACTGAATGTTTGTGATTTTAGCTAAATAACTCCATTAGTTATCattagggatgcatcgataccatttttaaatatatatgtatttttggACTTGCCGAAACTGATACCGATACCAAAAcgagtaacctacttagtattacACAGTTAGGGGTGTCATGAAAcatagctctgtttatgttggttgtGGCCCTGTGCTGAGtttgatgtttaaaatgttatggtgtttaaatagtatttttaatAGAGAGCACATGGGCTGCCAACCTGAGCGTAGAGAACAGTATCAGCAAGCCTGGGAATTAAAAATGAGTTCAAGGTGCCATGAATTGCACCTAGACTCTCAAGCAAATTGTAGACCCTGGTGAAAGGAAGCATGCATATCTCAGTGCATCATATCAGTGCTTGCAGAACTGGCGTGTGTgcctcagtgctcagtgctcgcagaactgaagtgctctcgcATGCAGCAGTTTTTCTGCACACTAGCTTCAACGCTCCACGCTCGCACATACCTTTGTGTGTGCATAATTCATGGTTCCTTGCCCTCATTTTAATGAGCACTCTCGCTAATACTGCTCTGTGCGCTCAGGTCAGCCACAATCACGCTCTCCATTAAGATACTCTTTATATGCCacaagatgttttatcaggttccTTGTATGGAATGCtgcaggaagatgctgtagATCCTCcacttgatattttcacagagtacagtttgcagtctgcatttctttgattgccatcattaatcatgaaatacatcCAGATTGCTGTCATTTTCTGGCATAGCGTGACAAATGTACACTAGGCTTTACGTCTCATTGTATCCTGCAGTATTGGATAATGGCATTTTTTACGAGTACCAGCAAATGAGCACGGCATTGACCAAAACTCGATTTAGTATcagtatcgatgcatccctagttATCATACGCCTTAGTATCTCAAAAAGGGCATCAATGATCACTAGAAAGTGTCAAATGACATTGAGTGGtcacatgcattaaaaaaagtgcaattgaCTTGACTAGTATTTTATATCAGGACAGGAAACTGGCATTAATTATagtaaaatatggaaaatacagTCAGGCTGTGTTTAGAGTCGAATGTGACACGTGTGCACGTGTAGGCCATTACCACTGCAGCCTCTGGCTCTTAATCCTGTTCACAAGTCGGCTACCTGCAGCTCCTTCACTGTTGTACATTCACACAAGGCATGTGATGGACTCAGGATGAGATACAACAAAGTGATGTGGATGTGCCTTCGATGGGTTCAGAACTCATCTGTAGAGTCATCTGTTTGTAAAAAGCTTGAAATTACATGTTCAAACTCTGTAGTACTCATCGTCTTCTGTATTGCATGAATATTGCACATTTCATTATCTTTAAATAATCTGCAATTttcagattatttattaaaacgCTACACTGAACTCATGGCTGTTTCTGTTTTATGGTAATAAAGATGGGAAAGGTGAAGTGTATTAACAAACAACCCAACTTCTCAGGGTTATTGCATTGTATAGTTGAGTGCAATCCTGCAACAAGATAACCATAAGGCTAAATCCACATtaataaatgctgaaaaaattacataatttaaatATGCTTAATTTTCACTGACCTCTCAATTTGTATATATGacaattttagtttttaatatcaatcaggtaatggatattaaaaaataaaattatgtcatatatacaaattaaataataataaaaaaaataaaaggtattTACAAAGGGAGTGTGTGCAGCCTCAAAAGTAATACACCAGGGAAACAGGATATGTCTGAGGGGACTGAGAacaaaaggaaaatatttttgtatttatttaaatgataaaatattccTTATGGGGTATCAATAATTTCAGGAcatattttaaagagaaaattcaatttttaaacaaaaaggaTTATGgttaaaacaaagataaatattCTCCTACTTTTGGAATAATCTTGtgtcttgtttattttataccatCATGTGTACTCATTTTTAGGACAGGTGCCAATAGTTCTGGAGGGCACAGTACAGTGAGTGGGTGATTTATGGAGGGGTGAAAATTAGGATATCAGGTTGGAAGGAATTATAAAGACAGCACAACTGTATGagttattagaaaataacttacttttttactattaatatcATACATATAATATCATAACATTTTTGtcaaatgaaaaaacatttgaagCCCAACAGACTATACGGTTGCTggtaattaaattcattttcattttgtcctaCAGGTATGCAAACCTTCCACACTTGACAGTAGCTAGATAGTATTACATCATGAAGGGGAATCAATTTTTATGAAGAGAAACTTGAAATGCAATATAAAATGAGGAATACTTTTTACTTCGCTTGATCGGCTTACTAAAAATTGTGTGGAAATTGGTATTTAAAGCCTCAGTCAC
>XM_034308710.1
AGCAGAGGGCGAATGCGGCCGGCTACATCCCTGCCGCACATTGCCCGGGGGCTTGTGGCTGCACCAGTACCCACACCTTCTACACCACGTGGGCCCTGTTTACTCGTGGCTCTGAGGCCCACAAATCTCGAACATGAGCGTCAGACCTTTTTCCAGTCGGACTATAAGTACGAGCCCCAGTTTGAGTACGCGTCACCCGAGCCTGTTAGTGTCCTGGAGAAGTATAAAGAAGGATCTGGACTCTTTCTTTCCCAGATACCTTGACATACCAGAAAGAGAAACCATTCCACCCCTGAATCCCACTCGCATCTTTTCCCAGGCAGTTAAAATCATGGAGTGTGTCCTGAGGAAGTTCGGCACCTACGAGAACTTTGAAGAAGTCACCGGAGGAAGTGTGTTGCCCAAGAGTCGAGTGTGGGCGACGGTGCGCAAGTACTTACAGAAAGAGGGCTGTGTGggtgagGTGGTGGTGTCTCTGTCTGATGAGCTCCTGTCTCAGGCCGTGATGATGGTGGAGAGCTGCAGGCCGACCTTAACCATAAACCTGTCAGGAGCACGGCAGCACTGGCTGGAAGGGATGCTAAGACACGAGATCGGTACACATTACTTACGCGGCGTGAATAACAGCATGCAGCCGTGGGCCACTGCCGTCGGAAGGAAGCAGTTTGGACTGAAGCCAGCCAATCCTACAGAGGAGGGACTGGCCAGCATTCACAGCGTGCTGTTGCGGAAGCAGCCCTTCTTGTGGCGAGCTGCTCTCCTCTACTACACCGTGTACCATGCAGCCAACATGAGCTTCAGCCAACTGTTCAGCTATATCGCTCGCTTCGTCCAGGACCCCGCGGTACGCTGGGAGTACTGCCTCCGTGCCAAACGGGGACAAACGGACACCTCAAAACCAGGCTGTTTCAGTAAAGATCAAGTCTACCTGGATGGGATCCTAAGGATTTTACGCCACAGGAGAAACATCGATTTCAAGATGTTAACCTCGCTGGGCAAgGTGTCCTATGAAGATGTGGAAAGGCTTCGTCATCTTGCGGTCCTGCGGAGAACCAGGATCCCGCACTTCATGCAAGACCAAGAACGTTACCTGCAACAGCTGGACCACATCGTCGTGACTAATGAACTGAACGATGCTGAGCTACAAGAGCTCATTCCATGAGGATGAGGGTTTGAATATACAGGACCTTTTTGATTATTTGCTCATTTCCAGGTGCGActcagtaaaaagaaaaataggatTATTGATTTAAAGCCTGGATTATAATTTTCAGCATCTGTGAAAATTCACACAGGACAAAATCAGTTTTAATCAAGTGATTTACTCACTTATTCATATTGTTtcaatgttaacattttttccAACAGTACCAACACATACCAACATGTGCGTTTACAGTTACAGAGATTATCACCAATTTCTCTGAACCAACAATATATCAGACATTTGGAACCTCtgaaatattatacaaatattgTAGCCTAATTATTGGAGGTCAGTGGAAGATCAAGGGTATCTTCATTACTTTTTATAATTAAGTTGCCATGATATTTCAAAGAAACATGTAGACAAGCACTCAAGTAGCAATTCGCTGATTTCTATACACACTTCTTTTACCTCGTGTTCTGCGATAAGCACTGCATTTTATTGTTGTTCCTGTGATGCTGTATTAGTCACTGCTAGAGCTTTTTAAACcactgtcagtatttatgcaagtatttattctttttttttttttacctcatgtATTCATAATGAAAACTGAATGTTTGTGATTTTAGCTAAATAACTCCATTAGTTATCattagggatgcatcgataccatttttaaatatatatgtatttttggACTTGCCGAAACTGATACCGATACCAAAAcgagtaacctacttagtattacACAGTTAGGGGTGTCATGAAAcatagctctgtttatgttggttgtGGCCCTGTGCTGAGtttgatgtttaaaatgttatggtgtttaaatagtatttttaatAGAGAGCACATGGGCTGCCAACCTGAGCGTAGAGAACAGTATCAGCAAGCCTGGGAATTAAAAATGAGTTCAAGGTGCCATGAATTGCACCTAGACTCTCAAGCAAATTGTAGACCCTGGTGAAAGGAAGCATGCATATCTCAGTGCATCATATCAGTGCTTGCAGAACTGGCGTGTGTgcctcagtgctcagtgctcgcagaactgaagtgctctcgcATGCAGCAGTTTTTCTGCACACTAGCTTCAACGCTCCACGCTCGCACATACCTTTGTGTGTGCATAATTCATGGTTCCTTGCCCTCATTTTAATGAGCACTCTCGCTAATACTGCTCTGTGCGCTCAGGTCAGCCACAATCACGCTCTCCATTAAGATACTCTTTATATGCCacaagatgttttatcaggttccTTGTATGGAATGCtgcaggaagatgctgtagATCCTCcacttgatattttcacagagtacagtttgcagtctgcatttctttgattgccatcattaatcatgaaatacatcCAGATTGCTGTCATTTTCTGGCATAGCGTGACAAATGTACACTAGGCTTTACGTCTCATTGTATCCTGCAGTATTGGATAATGGCATTTTTTACGAGTACCAGCAAATGAGCACGGCATTGACCAAAACTCGATTTAGTATcagtatcgatgcatccctagttATCATACGCCTTAGTATCTCAAAAAGGGCATCAATGATCACTAGAAAGTGTCAAATGACATTGAGTGGtcacatgcattaaaaaaagtgcaattgaCTTGACTAGTATTTTATATCAGGACAGGAAACTGGCATTAATTATagtaaaatatggaaaatacagTCAGGCTGTGTTTAGAGTCGAATGTGACACGTGTGCACGTGTAGGCCATTACCACTGCAGCCTCTGGCTCTTAATCCTGTTCACAAGTCGGCTACCTGCAGCTCCTTCACTGTTGTACATTCACACAAGGCATGTGATGGACTCAGGATGAGATACAACAAAGTGATGTGGATGTGCCTTCGATGGGTTCAGAACTCATCTGTAGAGTCATCTGTTTGTAAAAAGCTTGAAATTACATGTTCAAACTCTGTAGTACTCATCGTCTTCTGTATTGCATGAATATTGCACATTTCATTATCTTTAAATAATCTGCAATTttcagattatttattaaaacgCTACACTGAACTCATGGCTGTTTCTGTTTTATGGTAATAAAGATGGGAAAGGTGAAGTGTATTAACAAACAACCCAACTTCTCAGGGTTATTGCATTGTATAGTTGAGTGCAATCCTGCAACAAGATAACCATAAGGCTAAATCCACATtaataaatgctgaaaaaattacataatttaaatATGCTTAATTTTCACTGACCTCTCAATTTGTATATATGacaattttagtttttaatatcaatcaggtaatggatattaaaaaataaaattatgtcatatatacaaattaaataataataaaaaaaataaaaggtattTACAAAGGGAGTGTGTGCAGCCTCAAAAGTAATACACCAGGGAAACAGGATATGTCTGAGGGGACTGAGAacaaaaggaaaatatttttgtatttatttaaatgataaaatattccTTATGGGGTATCAATAATTTCAGGAcatattttaaagagaaaattcaatttttaaacaaaaaggaTTATGgttaaaacaaagataaatattCTCCTACTTTTGGAATAATCTTGtgtcttgtttattttataccatCATGTGTACTCATTTTTAGGACAGGTGCCAATAGTTCTGGAGGGCACAGTACAGTGAGTGGGTGATTTATGGAGGGGTGAAAATTAGGATATCAGGTTGGAAGGAATTATAAAGACAGCACAACTGTATGagttattagaaaataacttacttttttactattaatatcATACATATAATATCATAACATTTTTGtcaaatgaaaaaacatttgaagCCCAACAGACTATACGGTTGCTggtaattaaattcattttcattttgtcctaCAGGTATGCAAACCTTCCACACTTGACAGTAGCTAGATAGTATTACATCATGAAGGGGAATCAATTTTTATGAAGAGAAACTTGAAATGCAATATAAAATGAGGAATACTTTTTACTTCGCTTGATCGGCTTACTAAAAATTGTGTGGAAATTGGTATTTAAAGCCTCAGTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930910.2 True 4829 mRNA 0.42 7 5407596 5418681
XM_034308710.1 False 4204 mRNA 0.40 6 5407596 5415705

Neighbor

gene id symbol gene type direction distance location
sirt3 sirt3,LOC107663051 coding downstream 41361 5360418 ~ 5366235 (-)
cdhr5a LOC108270552,LOC108412775 coding downstream 82138 5318352 ~ 5325458 (-)
trnai-uau_2 NA coding downstream 93342 5314162 ~ 5314254 (-)
LOC113536575 adamts7 coding downstream 105245 5229326 ~ 5302351 (-)
trnai-uau_1 NA coding downstream 117002 5290502 ~ 5290594 (-)
nqo1 nqo1 coding upstream 1315 5419996 ~ 5446722 (-)
LOC113536779 LOC108271307 coding upstream 15986 5434667 ~ 5452341 (-)
dpep1 dpep1,LOC107730179 coding upstream 46992 5465673 ~ 5481287 (-)
hp LOC108270509 coding upstream 87236 5505917 ~ 5509942 (-)
dhodh dhodh,LOC107730177 coding upstream 118371 5537052 ~ 5545521 (-)
G176354 NA non-coding downstream 497 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 294328 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 560455 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 566903 4839988 ~ 4840693 (-)
G176015 NA non-coding downstream 671180 4732382 ~ 4736416 (-)
G176556 NA non-coding upstream 213145 5631826 ~ 5715020 (-)
G176817 NA non-coding upstream 664147 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 753517 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 765654 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 842116 6260797 ~ 6261240 (-)
trip4 trip4 other downstream 210778 5139610 ~ 5196818 (-)
G176307 NA other downstream 326701 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 903267 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1411143 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 1497703 3851847 ~ 3909893 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 277699 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 1438074 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 2061741 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 2161753 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 2257235 7675916 ~ 7764430 (-)

Expression


Co-expression Network