LOC113536777 (LOC108270592,LOC103040452,LOC108435886)


Basic Information

Item Value
gene id LOC113536777
gene name LOC108270592,LOC103040452,LOC108435886
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5522248 ~ 5524430 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930917.2
ATGGCCTCAGTGACGGCAAACCTCAGCGTGCCCTGGGGCCCTGGTGTGCTAATCGACATTTCTAATCACACATCAGCTGGATCTCCAGGAGTGTCTCGTTCTCCAGAGCCTCCTTGCACCATGTGCTGCTGTGGATTACTGAACCGTACACTGACTGTGGCGTTCATGGTCGGTCTGGCCTTCGCCATTGTCGTCGGCAACGTGGTGACGCTCACAGTGTTCATGCAGACGCGCCAGTCCCGCACGCCACAGGGCTACCTCAAAGtatCTCTGGCCATAGCTGACATGATGGTCGGGATGGTGGTGGTACCGTTCTCCGTTTACACTGAGATATCCATCATGGTGACCAGCACCCCTCCTACGTGGTACCAGAGTGGATCTACAGTCTCAGAACAAGAACCTTCCAGCTCCTGGCAGCCCTGCATGGTGATCGGCCCAATGTTTGCTGGTTGCACTTTCGTCTCTATCAGCACTATCTTCTTGATGACGGTGGAGCGCAGCGTGGCCATCTTATGGCCATTACAGAAAGATACACTTGTGACCCTGCGGCGGACTTTGCTTCTGATCCTGGCATCATGGACTGGCAGCTTCCTGCTTGCGGTGGTGCCCCTAATCTTTAGCGACAACTTTACTCTGGAGTACAATGAGTGCAGTCGGATGTGTATCTATGCCCCACTCCCGGTGGGTCTTCAGTTGCCTGCTGACACCCACATACTGCTGCTATTTCCTGCCTTCGACTTCACACTCCTGGGCAGCACTTTGATTGTTAACATCCTGTCCTTCACTAGCATCTGCCGCTACACCCGCAAGCGCAAGCTCCTGTCAGAGGGACTCGAGGGAGGCGCAAACACCTGCTCCTACAGACCCTCCTTTTCAGACATCAAGGCAGCCAAAACTATTGGCATCCTCACCTTCGCTTTTGCTGCCTCATTCTCACCCATTGCTGTCTTTGTTCTGGGCAATGTGGTTGGCTACACCTGGTGCAACTTCTCCTTCTTCGCCTTCTGGATCCTGACAGGGAACAGCTGCTGTAATGTGATTATCTACAGCGTCAGGGATCATCGGTTTAGGAAAGGGGTGTTGCTTCTTTTTCACAGGGACCGTTCGCCACCACATTCTGAGAAGAGCTAACAGGTCCAGGTATAGACTCAATCCCACGTCTACACCAGCGTCACCTATATTTCTTATTCCTGACCACCTGCCCATGAGGATGGCGGGGTCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930917.2 True 1224 mRNA 0.53 2 5522248 5524430

Neighbor

gene id symbol gene type direction distance location
sult5a1 st2b1 coding upstream 25795 5489015 ~ 5496453 (+)
csnk2a2a csnk2a2a,LOC108412781,LOC108270938,LOC107730160,LOC107663022,LOC107712622 coding upstream 114801 5399124 ~ 5407447 (+)
LOC113536403 LOC108270935,LOC108412779,LOC103045764,LOC100149007,LOC107686837,LOC107600349,LOC107712618,LOC107730114 coding upstream 123347 5394017 ~ 5398901 (+)
si:ch211-146m13.3 si:ch211-146m13.3,LOC108270934,LOC108412786,LOC107663021,LOC107686840,LOC107561441,LOC107730175,LOC107600348,LOC107712612 coding upstream 133669 5379911 ~ 5388579 (+)
LOC113536448 psmd13,LOC108270933,LOC108412783 coding upstream 144357 5366861 ~ 5377891 (+)
LOC117598428 LOC108270908 coding downstream 25001 5549431 ~ 5562727 (+)
gemin6 gemin6 coding downstream 183959 5708389 ~ 5710341 (+)
rfc4 rfc4 coding downstream 239377 5763807 ~ 5772916 (+)
ankrd13c ankrd13c,LOC102791519,LOC106573859 coding downstream 264017 5788447 ~ 5828396 (+)
sirt7 sirt7 coding downstream 321029 5845459 ~ 5853826 (+)
G176406 LOC108270509 non-coding upstream 12394 5505770 ~ 5509854 (+)
G176384 NA non-coding upstream 98153 5420887 ~ 5424095 (+)
G176056 myo9a non-coding upstream 561722 4912078 ~ 4960526 (+)
G176041 NA non-coding upstream 628891 4893142 ~ 4893357 (+)
G175999 NA non-coding upstream 661305 4787742 ~ 4860943 (+)
G176430 NA non-coding downstream 78226 5602656 ~ 5614328 (+)
G176469 NA non-coding downstream 152776 5677206 ~ 5690860 (+)
G176596 NA non-coding downstream 290165 5814595 ~ 5815106 (+)
G176608 NA non-coding downstream 331095 5855525 ~ 5857242 (+)
G176700 NA non-coding downstream 427384 5951814 ~ 5952155 (+)
G175977 pacsin3 other upstream 861112 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 877050 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 1222881 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 1863958 3647355 ~ 3658290 (+)
pth1b NA other upstream 1875133 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 1597955 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 1743401 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 2718925 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 2720522 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 2723586 8248016 ~ 8248088 (+)

Expression


Co-expression Network