cp (cp,LOC100533122)


Basic Information

Item Value
gene id cp
gene name cp,LOC100533122
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17534444 ~ 17545067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931656.2
CAGAGAGCCTGACATCCAAATCACAGAGGAACAACATGGGGAGGTTGCACTGGAACCTGATTGGGGTTTTGTGCTGTGTTGGAACTGTGTCCTGTATAATAAGGGAATATTTCATAGGTATTAAGGAGATTGAGTGGGATTATGCACCTACTGGGAAGAACCAGATTCAAAACACAACACTAGAGGAAGATGAACATGCAAGGACATTTTTGGAAAATGGTGACCTTAGGATTGGCCGTGTGTATAAGAAGGCGGTGTACCTCCAGTACACAGACCTTAGCTTCAGGCAGGAGATAGAGAAGCCCAAATGGTTGGGCTATGTCGGGCCTATCATCAGTGCTGAAGAGGATGACATTGTGGTTGTGCATTTAAAGAACATGGCTTCTCGTGCATACACCATTCATCCCCACGGAATTACTTACAATAAATCTCATGAAGGGGCATGGTACCCTGACATGACAGGTAAAGAGGAGATCCTTGATGATGCTGTGGCTCCTGGGAAGATGTATAACTATATGTGGACGCTGTCTTCCTCTCATGCTCCTGGAAAAGATGACACGAACTGCCTGACCCGAATATACCACTCTCACGTCAATGCCCCAAAAGACACTGCCTCAGGACTCATTGGGCCACTTATTATCTGTAAAAAAGGTACTTTAGACATACATGGTGACAAATCAGGCGACTACTTATACACCCTCATGTTCACTGTTTCTGATGAAAACCTCAGCTGGTACCTGGATGACAACATCAAGAAGTACTGCAAAACACCAACCAAAGTCGACAAGGATGATGAGGACTTTCAGGAGAGCAATAAAATGCACACGATTAATGGTTACGTCTTTGGCAACTTGCCAGGCCTGAGCATGTGCATGGGCAATAAGATTCAATGGCACCTTTTTGGGATTGGCAACGAGGTGGACATCCATTCTGCGTTCTTCCATGGTCAGATCATAAAGAACAGACAGCACCACACAGACACCATTAGCCTCTTCCCAGCTACATTTGTCAGTGCAGAAATGGAGGCGGACAACCCTGGACAGTGGCTATTGAGCTGCCAGGTTAATGATCACCTGGAGGCGGGCATGCAGGCAATTTTTGAGATCAAGAAATGTTTCCCGGCCGTGCATAAGCCCAGACCATTTGGTGAAGTCAGACAGTACTACATTGCTGCCGAGGAGATTACCTGGGACTATGGACCTACACAGGTCAACTACTACACTGGCATTAAGTTACAGGATGACAGTATGGCTGGCATATTCTTTAATAACCGTAAAGATCGCATTGGAGGGAAATACAAGAAGGTCCAGTACGTGGAATACACAGATGACACCTTTACCAAGCACAAAGAGAGAACACCTGAAGAGGAACACCTGGGCATTCTGGGTCCAATCATCAGGGCAGAGGAGGAGGACACCATTAAGGTCACTTTTAAGAATAAAGCAAGCCGACCTTACAGCATTCAGCCTCATGGAGTACAGTACAACATTGAAATGGATGGCACACTTTACCACAATGTTCTAGAAGAATCGTATACTGCGAAAAAGCTTAGGGAACTCAAGAAAGAAGCAAGAATTGTTGAACCTCTTCCTGCTGCCCTGGTACGTCCTGGCGCTACCTATAAGTATGAGTGGGTGGTGCCTAAGGATGGAGGTCCGACTGAAAACGATCCTGACTGTATCACCTACCTGTACTACTCTGCCGTGGACCCGATCAAAGACACCAACTCTGGCCTGGTTGGACCTCTCCTAATCTGTAAACCAAAAACCCTCAAAGCAGGCAAACAAAAAAATGTGAACAAAGAATTCCACCTGCTTACTACGGCTTTTGATGAGAACCTCAGTTGGTATTTAGATGAAAACATTAACAGATTCGCAAAACAACCTAATTCTGTGAAGAAAGATGATGAAGATTTTCAGTTGTCTAATAAGATGCATTCAATCAATGGATACATGTATGGAAATCTCCAAGGCCTGAAAATGTGCAAAGGAGACAAGGTTTCTTGGCATCTTTCGGGTTTGGGATCAGAGGGGGACATTCATGGACTTTACTTCCATGGCAACAGGTTCCTCTACAGAGGAACAAGGAGAGACACCATCACCGTATTCCCTCATGTCTCACATACAGTCATCATGGAGCCAGACAGCATGGGACAATTTGAGGTGACATGCAAGAGCGCTGATGATAACCATGCAGGTATGAGAGCGAACTACGTAGTGGAGAAGTGCAGTTTCTGGAGCAGGCAGTCAGAGATCATGCTCCATCAGAAGAAATATTACATTGCTGCTGTAGAGATGGACTGGGATTATTCTCCCAGCCGCACCTGGGAGGAGAAAATGTTTCACAACCTTAAGGATAGCCCAGGTAACACCTTCCTTAATAAAGGGGGCAAATTTATTGGCTCCAAATATAAGAAGGTCCTGTACAGAGAGTACACTGATGACACGTTCACTAAGCCAAAGGACAGACCTGCTGATATGGAACACTTAGGAATTTTGGGTCCTATGATTCATGGAAATGTGGGAGAGAAAGTAAAGGTGGTTTTCAAGAACTTGGCCAAGAGGCCATACTCTATACATGCACATGGAGTAAAGACGGACAATCCTGAAGTCACTCCAACTCAACCAGGTGAAACTCAGACATACACCTGGTATATTCCTAAGACTGCTGGCCCAACGTCTGAACAGGAGGAATGCAATGTTGGAGCTTACTATTCAAGTGTAGATGTTAACAAGGATTTGTACAGTGGACTGATTGGGCCGCTGGTAATCTGTCGGAAGAGTCTGCTGAGGACATTGGGGCTAAAGAAAGAGATTGAAGAGTTTGCATTGCTGTTCATAGTGTTTGATGAGAATAAGTCCTGGTATTTGGAAGacaacataaaaacacatgTGAAAAATCCTCCCAGTAATTTACAGGAGGATGACGAGTTTATTGAAAGCAACAAAATGCATAGTATAAATGGTCTGGTCTTTGGCAACCTTCATGGGCTGAATATGAATGTGGGAGATAAGGTGTACTGGTACCTGATGGGAATGGGAACTGAAatagacatacacacagcacatttCCATGGCCACAGCTTTGAGTACAAGGTGAGTGGCGTCCATCGCAATGATGTGTTCGATTTATTCCCCGGCACGTTCCAGACAGTCAAAATGCGCCCTCAGTACCCAGGCACCTGGCTCCTGCACTGCCATGTCGCTGACCATGTGTTGTCTGGCATGGAGACCACATACACAGTGAAAGAATCCAAGGGTTAGAGCTGAAGAACTCCAACACACGACcatttttaagatttaataCCTACTGTAACGCCAAAACCTTTCACATATTATGAATAAAACTTATGGTAATTAAGTGTA

Function

symbol description
cp Predicted to enable oxidoreductase activity. Predicted to be involved in iron ion homeostasis and iron ion transport. Predicted to act upstream of or within copper ion transport. Located in cytoplasm and nucleus. Is expressed in digestive system; female organism; liver and biliary system; male organism; and yolk syncytial layer. Human ortholog(s) of this gene implicated in aceruloplasminemia; epilepsy; and hemosiderosis. Orthologous to human CP (ceruloplasmin).

NR:

description
ceruloplasmin-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005507 copper ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K13624 CP; ceruloplasmin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931656.2 True 3365 mRNA 0.45 20 17534444 17545067

Neighbor

gene id symbol gene type direction distance location
LOC113528887 LOC108271171,LOC108439433 coding upstream 1766 17507207 ~ 17532678 (+)
wwtr1 wwtr1 coding upstream 37265 17453782 ~ 17497179 (+)
commd2 commd2 coding upstream 84663 17446400 ~ 17449781 (+)
mark1 mark1,LOC108271264,LOC108411950 coding upstream 203194 17281249 ~ 17331250 (+)
ptk7a ptk7,LOC108411955,LOC107702250,LOC107588446,LOC107732247 coding upstream 256989 17240492 ~ 17277455 (+)
senp5 LOC108270997 coding downstream 93722 17638789 ~ 17645112 (+)
phka2 phka2,LOC108439424,LOC107718215,LOC107715813 coding downstream 103868 17648935 ~ 17669132 (+)
nlgn1 nlgn1,LOC107593140,LOC106584306 coding downstream 333173 17878240 ~ 18133981 (+)
si:ch211-51h4.2 LOC108442512 coding downstream 882015 18427082 ~ 18551154 (+)
LOC117598435 NA coding downstream 1121509 18666576 ~ 18671367 (+)
G183032 NA non-coding upstream 83708 17450457 ~ 17450736 (+)
LOC113535983 NA non-coding upstream 111124 17416730 ~ 17423320 (+)
G182932 NA non-coding upstream 450915 17079637 ~ 17083529 (+)
G182910 NA non-coding upstream 544925 16989319 ~ 16989519 (+)
G182906 NA non-coding upstream 573145 16960659 ~ 16961299 (+)
G183058 LOC108270510 non-coding downstream 32575 17577642 ~ 17583785 (+)
G183478 NA non-coding downstream 179696 17724763 ~ 17725260 (+)
G183566 NA non-coding downstream 343060 17888127 ~ 17888353 (+)
G183578 NA non-coding downstream 357718 17902785 ~ 17902984 (+)
G183585 NA non-coding downstream 370936 17916003 ~ 17916210 (+)
LOC113536271 ankub1 other upstream 88196 17439796 ~ 17446248 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other upstream 123019 17365698 ~ 17411425 (+)
LOC113528769 klc4 other upstream 311912 17196280 ~ 17222532 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other upstream 345129 17121899 ~ 17189315 (+)
G182877 NA other upstream 611522 16913258 ~ 16922922 (+)
anos1b LOC108271321,LOC108439428 other downstream 53397 17598464 ~ 17636395 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other downstream 127104 17672171 ~ 17751502 (+)
ect2 ect2,LOC107674529,LOC107718889 other downstream 209109 17754176 ~ 17781814 (+)
G183549 NA other downstream 250378 17795445 ~ 17796619 (+)
LOC113526284 naaladl2 other downstream 621555 18166622 ~ 18409057 (+)

Expression


Co-expression Network