soul4 (LOC108270966,LOC108411954)


Basic Information

Item Value
gene id soul4
gene name LOC108270966,LOC108411954
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17224426 ~ 17235688 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933142.2
TTCAGACTGctcctctcactcacactcatccTCACTGATAGTAGACACGGGGGTCACGTGACCGCCGAAGTGCACTCGCGCAGACGGTGGAGAAGAAGAGCAGCTGCTGCTTCACTCTTCTCTCTTCCTGAACCGGGTCACACTGCaaatttggaagaaaaaaaaatggctcttATCTCAATTGAAGATCTTGCTGAACTGGATGATGAGCAGTTAGATGATGACATCACTGACAACTCCCAGCCAgcagatgaggaggaggaggaaaggcTGCTTGCTCACTGGCAGGCTGTGGGGCGGACACATCAGGTCACCGTCCCCAGAGAGATGACTGGACCAATTATGGAGATGACAAGGAGGAATCAGGAAATGGAACAGGTTCCTTTCGTCACCATAGCAAAACATGAAAAGATGGGTGAGGTGATATATGAGGAGAGGGTGTATCCACCAGGTAAATGGGCCTGTATCACTGTTGGAGAAAAGCTGTATGAGCAGAGCATCTCTATGGGCTTCATGAAACTCATGCGCTTCATCTGCAAGGAGAACTCAGCTGGTCGTTACTTGGGCATGACCGTGCCTGTGGTGAATGGAATAACGATGCTGGAGGATGGCAGCGGCTTTGAAAGTGAAGTCCTGACAGCTTTCTACTTGCCTGAGGAGTTTCAGGCAAACCCTCCCCAGTCTGCTGACCCAGACATCACCATCATCCACAGGGACTCATTGCGAGTAATCACCCGGGTTTTCTTTGGCACCACCACGGAGGAGACAATCTCACGGCAGATCAGCCTGCTTTGGGAGCTGCTGGGAACATCTGATGACATTCACCAAGACCAATACATGGTGGCCGTTTACGAGAACCCTGGGGTGCCGTCTCGTCGAAACGAGATCTGGTTCATCTGCCGGAACCCCTAAGGGATtcttctcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtcattgtTACAGCACCTCCCCTGTGGCACCAGAAAGAAAGACCAGGGAAGTGGACAGGACAGGGCTTATATTCCAACAGTATTAACTCAGGCAACTGAGGATTTTAGTGAATATTTACAGGTcatataataaaaagaattatttttgtatatgaaAAAAGCTAATTTAGTGCCAGTAATGCATAATAGGTACATAATTTCATCACAAATGTTAAGTCACATATGAAGAATATAAGAGGAATCAGAGTATACACAGTTCTCAGGTAGCATTTTTACACAGCTTGTATTATATCTCTTTTAGACTCCAAGCCCCTCATAGTTCTTTTTTATAAATTTCACTTAAATTTGACAAACTGAAGATTCACCACAAGGGGGCGTTTGAACCCAGCCTTTTGTCCAGAACCTCAATATTTCAGTCAGATTGTGGAACCCAGGTTGTGCTTCTGCTTCACATTTTTACACTAATTTAATGCAGTTTGTTTCTATCTACTCTGATCTCTTTTCAGATCACATGTCATGAGTCACTGCACCTTTTTCCCCAACTTTTGTATTGACAGAACAGTCTGCTGTCCTCGAtagattatgtaaaaaaaaaaactgaaaaagtgaAATACAGAATGTACAACTAACTTCACTGTGTATTAGTAGAAATCACTGCAGGTAATAGTGCACTCCTCCAATAATACACTCCACCTAAAGCTATTCCTTCAACAAGACAATCATTTCTGGTTCGAAGTGCTACTCGTCAAATGAAGGCTCTCACAAATAGTGTAGATGTTAATGCACTAACCAGCTTTACAATAGACCAAAGGTTTATGCAGCACGACAAATCAGAGGTGTTTCCATATACGGATTTTACTGTGACTGCGTATTTAAAATGTACTCGTAACTGTGCTTTTAATTATAATCAATTATTGTAAgaaaaatttgattatttttgtacaaaCACAGAAGCCTGGACAGGTATGCGTgggaaaatatatatgtttattccCTCATATATGCCTATTAGTTTGAATAACAAGAATATTCATCTAAAACATGTTTTAGacagtatacactgtacacactgacTAATTGACTAAAAGGCAGTTAGTctgtttgaccactaggtggaCAGCATGACCACTTTGGTTTATTTGGATGtgcttattttccttttaaggCTAAGAGGATTACATCTTTTCCTACTGAATAGGACCATTAAGATGTAGATACTCTAtatgatgtactgtatgtcaaaAGAACTTGAAGATTATAAAGACTTTTTACCAACCtttaaaataatcactgatttgGTAACGTAATCACCTTTTGTCAGAATGTTCTCCTGTGTGCCACTTTCCTCACTGTGTTTCTACTTGTATCATATTCACATATATCACATACACTTTCCACACTGATTTAATTACAGTTGAATAATCAAGCCCATTGTGTGTGGTAAGGAAATAAGAGACTAACTCAGTAGATATCTATGTTAAAAAACTAGCTAATGTTTGTTAAACTGTGGTGATGTAAATTTCATGTACTGTGGAGCTTAAAATGCGTATGTTGTGGACATTAATTGATATTTGTTCAGTTACTCTGAAGAATAAAATGCAGCTCTAATGGTC

Function

NR:

description
PREDICTED: heme-binding protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933142.2 True 2598 mRNA 0.41 6 17224426 17235688

Neighbor

gene id symbol gene type direction distance location
tle2b LOC108271164,LOC108430094,LOC107676970,LOC107719559 coding upstream 157470 17000105 ~ 17066956 (+)
trnak-cuu_26 NA coding upstream 194482 17029872 ~ 17029944 (+)
tle5 aes,LOC108271216,LOC108430095,LOC107593322,LOC107586404 coding upstream 248849 16949748 ~ 16975577 (+)
LOC113527868 LOC108271202,LOC108430096,LOC105011594,LOC107717982,LOC107699416,LOC106584406,LOC106613802,LOC107586405 coding upstream 276968 16912572 ~ 16947458 (+)
LOC113532286 LOC108270593,LOC108430073,LOC107719667,LOC100332608,LOC107699403,LOC107593325,LOC107676991,LOC107586464 coding upstream 362277 16858927 ~ 16862149 (+)
ptk7a ptk7,LOC108411955,LOC107702250,LOC107588446,LOC107732247 coding downstream 4804 17240492 ~ 17277455 (+)
mark1 mark1,LOC108271264,LOC108411950 coding downstream 45561 17281249 ~ 17331250 (+)
commd2 commd2 coding downstream 210712 17446400 ~ 17449781 (+)
wwtr1 wwtr1 coding downstream 218094 17453782 ~ 17497179 (+)
LOC113528887 LOC108271171,LOC108439433 coding downstream 271519 17507207 ~ 17532678 (+)
G182932 NA non-coding upstream 140897 17079637 ~ 17083529 (+)
G182910 NA non-coding upstream 234907 16989319 ~ 16989519 (+)
G182906 NA non-coding upstream 263127 16960659 ~ 16961299 (+)
LOC117598387 NA non-coding upstream 367289 16852408 ~ 16857137 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding upstream 498899 16708625 ~ 16725527 (+)
LOC113535983 NA non-coding downstream 181042 17416730 ~ 17423320 (+)
G183032 NA non-coding downstream 214769 17450457 ~ 17450736 (+)
G183058 LOC108270510 non-coding downstream 341954 17577642 ~ 17583785 (+)
G183478 NA non-coding downstream 489075 17724763 ~ 17725260 (+)
G183566 NA non-coding downstream 652439 17888127 ~ 17888353 (+)
LOC113528769 klc4 other upstream 1894 17196280 ~ 17222532 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other upstream 35111 17121899 ~ 17189315 (+)
G182877 NA other upstream 301504 16913258 ~ 16922922 (+)
G182819 NA other upstream 639483 16583303 ~ 16584943 (+)
LOC113532318 NA other upstream 967644 16255047 ~ 16256782 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other downstream 130010 17365698 ~ 17411425 (+)
LOC113536271 ankub1 other downstream 204108 17439796 ~ 17446248 (+)
anos1b LOC108271321,LOC108439428 other downstream 362776 17598464 ~ 17636395 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other downstream 436483 17672171 ~ 17751502 (+)
ect2 ect2,LOC107674529,LOC107718889 other downstream 518488 17754176 ~ 17781814 (+)

Expression


Co-expression Network