LOC113538485 (LOC100304649)


Basic Information

Item Value
gene id LOC113538485
gene name LOC100304649
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16211346 ~ 16233837 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933632.2
TTTTAAAAAGTACCCAGGAATGCTTAAACCCAAAGAATTGAGTCATTGTTGAAAAAGACACTCAGTCTTCCATTAACTGTCATAAATGTTCCACCTGCTCAGAACAGCTCAGAGTCTCTGTTGCACCATGGCACTCCTCTCACTGTTTCTGCTCACCTCTCTCTTGTGTCACATAGGACACTGTGCTTACGTCAACATGGGCATAGTGAACGGCTCTGTGGTCAAAGCACATTCCAGACCCTACATGGTTTCTGTCCAAAAAGATGGAAGTCATACTTGCGGGGGCTTCCTCGTGTCAGAGAACTTTGTAATGACGGCTGCACACTGCTGGGAACCAGGGGTGAAGCTGACGGTTGTAGTGGGTGCACATGAACTGAAAAAGAACAAGTCAGCTTTGCGCCATATGGAGGTGAAGCTTTACCACATCCATCCGATGTTTGACTCAGAGAATCTGCTCAATGATATTATGCTGCTGCAGttgAAAAAAAGCATCAAAAAGACCGAGAACATCAACTGGATCTCCATACCAAATGAAAAGAATCAGGGCATTAAGGCCAAGCAGGTCTGCAGCATAGCAGGCTGGGGGAAACGATCTGAAAATGGTGGAGGAAGTGATCATCTCCTGGAGGTCGATGTCACTGTCATTGACACAAAGGTCTGCGAGAAATCCTGGGGAAAGCCTTTTCATGTCTCCAGTTTGGTGTGTACTAAAGGTCACGGAGGGTTTTGTCAGGGAGACTCTGGAGGTCCTTTGGTGTGTCAGAACAGAGCCGTCGGTATTGTTTCATTCTACGATTCTAAAAACTGCAAATCACCAAATTTGCCCTATGTCTATACCAAAATTTCAAACTTTGTGCCTTGGATTCATTGTATTTTAGGACGCAAGGAGTGAGCACttggttattattttatatttggtgTTTAAGTCTCCCTCCCCATCCCACCCCCCATTTTTTCATGAAAGAAACTTAAGCCAGCATGTGGGTTTGTATTTATCTCTTGTATATGGGGCAGCTTTCTGTCTATACTCTGCCTACTCTGCCAACCTCACAGGGACTAGATATGTGTTTGCTCTCGAACCAAATAAAATGTGACAGTAAAATAAAGTCATTGTAAAACAGAGGAGCAGCAAAAGAACTTCACAAATCATTTTGTCACTGTGATGTTACGTATATGTAAGCTTGTCACGATtaagaataaataaactaactaaaaatgactaaataaa
>XM_026933710.2
TCTCGCAGCATGGGAGGGCACCAGTCCTTTAAGATCTCAGAGGaatcagaggaggaggagaaatcAAAAGGCTGTATGTAGCGGGGAAGATCCAGCCTGCCTATTAGGTCTGCTCTGAACAGCTCAGAGTCTCTGTTGCACCATGGCACTCCTCTCACTGTTTCTGCTCACCTCTCTCTTGTGTCACATAGGACACTGTGCTTACGTCAACATGGGCATAGTGAACGGCTCTGTGGTCAAAGCACATTCCAGACCCTACATGGTTTCTGTCCAAAAAGATGGAAGTCATACTTGCGGGGGCTTCCTCGTGTCAGAGAACTTTGTAATGACGGCTGCACACTGCTGGGAACCAGGGGTGAAGCTGACGGTTGTAGTGGGTGCACATGAACTGAAAAAGAACAAGTCAGCTTTGCGCCATATGGAGGTGAAGCTTTACCACATCCATCCGATGTTTGACTCAGAGAATCTGCTCAATGATATTATGCTGCTGCAGttgAAAAAAAGCATCAAAAAGACCGAGAACATCAACTGGATCTCCATACCAAATGAAAAGAATCAGGGCATTAAGGCCAAGCAGGTCTGCAGCATAGCAGGCTGGGGGAAACGATCTGAAAATGGTGGAGGAAGTGATCATCTCCTGGAGGTCGATGTCACTGTCATTGACACAAAGGTCTGCGAGAAATCCTGGGGAAAGCCTTTTCATGTCTCCAGTTTGGTGTGTACTAAAGGTCACGGAGGGTTTTGTCAGGGAGACTCTGGAGGTCCTTTGGTGTGTCAGAACAGAGCCGTCGGTATTGTTTCATTCTACGATTCTAAAAACTGCAAATCACCAAATTTGCCCTATGTCTATACCAAAATTTCAAACTTTGTGCCTTGGATTCATTGTATTTTAGGACGCAAGGAGTGAGCACttggttattattttatatttggtgTTTAAGTCTCCCTCCCCATCCCACCCCCCATTTTTTCATGAAAGAAACTTAAGCCAGCATGTGGGTTTGTATTTATCTCTTGTATATGGGGCAGCTTTCTGTCTATACTCTGCCTACTCTGCCAACCTCACAGGGACTAGATATGTGTTTGCTCTCGAACCAAATAAAATGTGACAGTAAAATAAAGTCATTGTAAAACAGAGGAGCAGCAAAAGAACTTCACAAATCATTTTGTCACTGTGATGTTACGTATATGTAAGCTTGTCACGATtaagaataaataaactaactaaaaatgactaaataaa
>XM_026933795.2
GTCTCGCAGCATGGGAGGGCACCAGTCCTTTAAGATCTCAGAGGaatcagaggaggaggagaaatcAAAAGGCTGTATGTAGCGGGGAAGATCCAGCCTGCCTATTAGGTCTGCTCTGCTCAGAGTCTCTGTTGCACCATGGCACTCCTCTCACTGTTTCTGCTCACCTCTCTCTTGTGTCACATAGGACACTGTGCTTACGTCAACATGGGCATAGTGAACGGCTCTGTGGTCAAAGCACATTCCAGACCCTACATGGTTTCTGTCCAAAAAGATGGAAGTCATACTTGCGGGGGCTTCCTCGTGTCAGAGAACTTTGTAATGACGGCTGCACACTGCTGGGAACCAGGGGTGAAGCTGACGGTTGTAGTGGGTGCACATGAACTGAAAAAGAACAAGTCAGCTTTGCGCCATATGGAGGTGAAGCTTTACCACATCCATCCGATGTTTGACTCAGAGAATCTGCTCAATGATATTATGCTGCTGCAGttgAAAAAAAGCATCAAAAAGACCGAGAACATCAACTGGATCTCCATACCAAATGAAAAGAATCAGGGCATTAAGGCCAAGCAGGTCTGCAGCATAGCAGGCTGGGGGAAACGATCTGAAAATGGTGGAGGAAGTGATCATCTCCTGGAGGTCGATGTCACTGTCATTGACACAAAGGTCTGCGAGAAATCCTGGGGAAAGCCTTTTCATGTCTCCAGTTTGGTGTGTACTAAAGGTCACGGAGGGTTTTGTCAGGGAGACTCTGGAGGTCCTTTGGTGTGTCAGAACAGAGCCGTCGGTATTGTTTCATTCTACGATTCTAAAAACTGCAAATCACCAAATTTGCCCTATGTCTATACCAAAATTTCAAACTTTGTGCCTTGGATTCATTGTATTTTAGGACGCAAGGAGTGAGCACttggttattattttatatttggtgTTTAAGTCTCCCTCCCCATCCCACCCCCCATTTTTTCATGAAAGAAACTTAAGCCAGCATGTGGGTTTGTATTTATCTCTTGTATATGGGGCAGCTTTCTGTCTATACTCTGCCTACTCTGCCAACCTCACAGGGACTAGATATGTGTTTGCTCTCGAACCAAATAAAATGTGACAGTAAAATAAAGTCATTGTAAAACAGAGGAGCAGCAAAAGAACTTCACAAATCATTTTGTCACTGTGATGTTACGTATATGTAAGCTTGTCACGATtaagaataaataaactaactaaaaatgactaaataaa
>XM_026933882.2
TGGGAGGGCACCAGTCCTTTAAGATCTCAGAGGaatcagaggaggaggagaaatcAAAAGGCTGTATGTAGCGGGGAAGATCCAGCCTGCCTATTAGCTCAGAGTCTCTGTTGCACCATGGCACTCCTCTCACTGTTTCTGCTCACCTCTCTCTTGTGTCACATAGGACACTGTGCTTACGTCAACATGGGCATAGTGAACGGCTCTGTGGTCAAAGCACATTCCAGACCCTACATGGTTTCTGTCCAAAAAGATGGAAGTCATACTTGCGGGGGCTTCCTCGTGTCAGAGAACTTTGTAATGACGGCTGCACACTGCTGGGAACCAGGGGTGAAGCTGACGGTTGTAGTGGGTGCACATGAACTGAAAAAGAACAAGTCAGCTTTGCGCCATATGGAGGTGAAGCTTTACCACATCCATCCGATGTTTGACTCAGAGAATCTGCTCAATGATATTATGCTGCTGCAGttgAAAAAAAGCATCAAAAAGACCGAGAACATCAACTGGATCTCCATACCAAATGAAAAGAATCAGGGCATTAAGGCCAAGCAGGTCTGCAGCATAGCAGGCTGGGGGAAACGATCTGAAAATGGTGGAGGAAGTGATCATCTCCTGGAGGTCGATGTCACTGTCATTGACACAAAGGTCTGCGAGAAATCCTGGGGAAAGCCTTTTCATGTCTCCAGTTTGGTGTGTACTAAAGGTCACGGAGGGTTTTGTCAGGGAGACTCTGGAGGTCCTTTGGTGTGTCAGAACAGAGCCGTCGGTATTGTTTCATTCTACGATTCTAAAAACTGCAAATCACCAAATTTGCCCTATGTCTATACCAAAATTTCAAACTTTGTGCCTTGGATTCATTGTATTTTAGGACGCAAGGAGTGAGCACttggttattattttatatttggtgTTTAAGTCTCCCTCCCCATCCCACCCCCCATTTTTTCATGAAAGAAACTTAAGCCAGCATGTGGGTTTGTATTTATCTCTTGTATATGGGGCAGCTTTCTGTCTATACTCTGCCTACTCTGCCAACCTCACAGGGACTAGATATGTGTTTGCTCTCGAACCAAATAAAATGTGACAGTAAAATAAAGTCATTGTAAAACAGAGGAGCAGCAAAAGAACTTCACAAATCATTTTGTCACTGTGATGTTACGTATATGTAAGCTTGTCACGATtaagaataaataaactaactaaaaatgactaaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933632.2 False 1228 mRNA 0.43 6 16229738 16233837
XM_026933710.2 True 1243 mRNA 0.44 6 16211347 16233837
XM_026933795.2 False 1239 mRNA 0.44 6 16211346 16233837
XM_026933882.2 False 1218 mRNA 0.44 6 16211357 16233837

Neighbor

gene id symbol gene type direction distance location
fgf22 fgf22,LOC106613753,LOC107569930,LOC107655219,LOC107719646,LOC107687712 coding upstream 3526 16179542 ~ 16207820 (+)
hcn2b hcn2,hcn2b,LOC108429559 coding upstream 89237 16087204 ~ 16122109 (+)
bsg NA coding upstream 126213 16074562 ~ 16085133 (+)
fstl3 fstl3,LOC107728592,LOC107687713,LOC107655223,LOC107569933 coding upstream 148236 16056916 ~ 16063110 (+)
cbarpb cbarp coding upstream 180495 16012468 ~ 16030851 (+)
LOC113538695 NA coding downstream 13890 16247727 ~ 16249191 (+)
LOC113533225 NA coding downstream 39131 16272968 ~ 16275203 (+)
hsd11b1la hsd11b1l coding downstream 46142 16279979 ~ 16285280 (+)
rgmd LOC108271392,LOC107576053 coding downstream 88319 16322156 ~ 16328589 (+)
LOC113544157 LOC108271000,LOC108435918,LOC107096963,LOC108239462,LOC107724979,LOC102796634,LOC107552698,LOC105011544 coding downstream 343697 16577534 ~ 16582783 (+)
G182190 NA non-coding upstream 202111 16006054 ~ 16009235 (+)
G182116 NA non-coding upstream 220936 15988630 ~ 15990410 (+)
G182115 NA non-coding upstream 223365 15938100 ~ 15987981 (+)
G182167 NA non-coding upstream 317819 15893292 ~ 15893527 (+)
G182152 cirbp,LOC108271114 non-coding upstream 325521 15873010 ~ 15885825 (+)
G182483 NA non-coding downstream 26221 16260058 ~ 16260316 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding downstream 474788 16708625 ~ 16725527 (+)
LOC117598387 NA non-coding downstream 618571 16852408 ~ 16857137 (+)
G182906 NA non-coding downstream 726822 16960659 ~ 16961299 (+)
G182910 NA non-coding downstream 755482 16989319 ~ 16989519 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 537364 15668798 ~ 15673982 (+)
pdzk1ip1 NA other upstream 1499619 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 1561661 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 1611367 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 1648336 14561555 ~ 14563010 (+)
LOC113532318 NA other downstream 21210 16255047 ~ 16256782 (+)
G182819 NA other downstream 349466 16583303 ~ 16584943 (+)
G182877 NA other downstream 679421 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 888062 17121899 ~ 17189315 (+)
LOC113528769 klc4 other downstream 962443 17196280 ~ 17222532 (+)

Expression


Co-expression Network