timm44 (timm44,LOC108441293,LOC107660209,LOC107561596,LOC107704494)


Basic Information

Item Value
gene id timm44
gene name timm44,LOC108441293,LOC107660209,LOC107561596,LOC107704494
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14189261 ~ 14203732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940367.2
CCTGTGAAAGCCGAAGCGTGGGCTTTGGCTCCGCCTCCGGAAATGCGTCACAAGGTCAACAGACGCTCACACAGGCAACGCGACCAAGATGGCGGCCTCCTTGTGTCACTGTTACCAGcACTATGCCAGGAGGGGTTTAGTATTACTCACTACACGCACGTGTTTGTCCACATACAGCAGCTCCCATGTGCACAGGATATGTGGGTCTGTCACAAGTGCCTCACAGGTACGGTATTTATCAGCAGACAGAGGAGGGCGAAAAGGCTTCATAGGTGAGTTTGTGGACACCTTGAAGCAGGAGCTGAACAAAAACAAGGAGATGAAGGAGAACATCAAGAAATTTCGCGAGGAGGCCAAGAAGCTGGAGGAATCTGAGGCACTTCAACAAGCTAGGCGGAAATATAAAACCATCGAGTCTGAAACAGTGAGGACTTCAGAGGTGCTGAAGAAGAAGCTGGGGACGCTGTCTGAGACGGTCAAAGAGGGTTTAGAAGAGGTCAGCCGCTCggatattggaaaaaaaatcatggaggGAATGGAGGAAGCAGCAAAAACAGCCAAGCAGTCAGCAGAGACTGTCTCTAAGGGCGGAGAGAAGCTGGGAAAGACTGGAGCCTTTCGAGCAATCTCACAGGGTATGGAGAGCGTAAAAAAGGAGATCGGGGATATTGGTCATAGCGGACCTTACAGAGCACCCACTAGGTTACGGAAGAGAAGTGACTTCTCACCTAAAGCAGCAGAGACCGAAGCCAAAGTCTTTGATGCTAATGAggaGGCAACAGGTGTCGTGCTTCACAAGGACTCAAAATGGTACCAGCAGTGGAAGGACTTCAAGGACAATAATGTGGTTTTTAACAGATTCTTCGAAATGAAGATGAAATACGATGAGAGTGACAATGCCTTAATCAGAGCGTCTCGTGCCATCACGGATAAGATGACAGATCTTATAGGTGGCTTGTTCTCCAAGACTGAGATGTCTGAAGTTCTCACAGAGATCTTGAAGGTAGACCCCAACTTTGATAAAgactcatttcttaaacaatgTGAGAAGGACATCATTCCCAACGTCCTGGAGgctatGATTCAAGGAGAGCTTGAGGTCCTCAAGGATTGGTGCTATGAAGCTACTTACAGCCAGTTGGCCCATCCAATCCAGCAAGCTAAAGCAATGGGACTGCAGTTTCACTCGAAGATTCTTGACATCGACAATGTAGATctggccATGGGGAAAATGATGGAACAAGGCCCTGTCCTCATCATCACCTTCCAGGCCCAGCTGGTTATGGTGATCCGTAACACCAAGGGCGAAGTGGTGGAGGGCGACCCGGAGAAAGTCCTCAGGATGATGTATGTTTGGGCTTTGTGTCGAGACCAGGAGGAGTTCAACCCCTATGCTGCCTGGAGGCTGCTGGACATCTCAGCCTCGAGCACGGAGCAGGTCCTCTGAGGAGCTTGaggacacacacgcacaccccacccacacacacacacacacacacacggcccaGGATGGAAGGAAGTGGCTGTGCACACACAATCCACCGTGTGACACTTTCTCTGAAGCATGACTGTACTACATGGGCCGTGTCGTATCACTGGACCTGAGAATGATGTCACATGGTTGGATGCATGTGTGACACTCAGCTGATTGTGTTGCATTTCTGCTgcagatttgtgttcatttcctCCCTACACAGTAGGGTCTGTGGTAAAGCAGTGccatttatatcaaataatgaCCTTAAAGGGATAGTTTACCCGGATATGCTAACACGGCTATCAGCCAGTGGAAAAGCTCAAAAGCCAACATAACTTTAAAGTCCACCGattattagctacattagcattttTGCCCAGACTATATCTTTAATGGCTAAGATttgtataatataatcattCCCGAAAGTTTAATGTCAAATAAAGTATAACTGTAAGAACGTATTTgcttttaatcacatttaaaaatgtggcAAATGTTTGCAAGACTATTCCTTAAACAGGAAATTCTACATCTTGGCAAATAAcatcatttttcagttttttaagatacagtgtgtaatagagtTTTAAAGTGAAGTCAGCTTAAccctgtaattaaaaaaacaatcaggaATGAAATTCTGCTTTTGCCAAGGCATAAACTCACACATCAAAAATGgagcttttaaataaattagaaaagagTTGGAATGTGTAAATGAAGTCTATTGTGAAtgttcaaaataaacacaaatatacttaaaggaaa
>XM_034308961.1
TGCCTGAGAAATATTACTTTATCATTTGTAAGGATGTAGCAGTGAAAATATACAAGCAGAGgttatagctagctagcattagcgtGTCATGCCGcACTATGCCAGGAGGGGTTTAGTATTACTCACTACACGCACGTGTTTGTCCACATACAGCAGCTCCCATGTGCACAGGATATGTGGGTCTGTCACAAGTGCCTCACAGGTACGGTATTTATCAGCAGACAGAGGAGGGCGAAAAGGCTTCATAGGTGAGTTTGTGGACACCTTGAAGCAGGAGCTGAACAAAAACAAGGAGATGAAGGAGAACATCAAGAAATTTCGCGAGGAGGCCAAGAAGCTGGAGGAATCTGAGGCACTTCAACAAGCTAGGCGGAAATATAAAACCATCGAGTCTGAAACAGTGAGGACTTCAGAGGTGCTGAAGAAGAAGCTGGGGACGCTGTCTGAGACGGTCAAAGAGGGTTTAGAAGAGGTCAGCCGCTCggatattggaaaaaaaatcatggaggGAATGGAGGAAGCAGCAAAAACAGCCAAGCAGTCAGCAGAGACTGTCTCTAAGGGCGGAGAGAAGCTGGGAAAGACTGGAGCCTTTCGAGCAATCTCACAGGGTATGGAGAGCGTAAAAAAGGAGATCGGGGATATTGGTCATAGCGGACCTTACAGAGCACCCACTAGGTTACGGAAGAGAAGTGACTTCTCACCTAAAGCAGCAGAGACCGAAGCCAAAGTCTTTGATGCTAATGAggaGGCAACAGGTGTCGTGCTTCACAAGGACTCAAAATGGTACCAGCAGTGGAAGGACTTCAAGGACAATAATGTGGTTTTTAACAGATTCTTCGAAATGAAGATGAAATACGATGAGAGTGACAATGCCTTAATCAGAGCGTCTCGTGCCATCACGGATAAGATGACAGATCTTATAGGTGGCTTGTTCTCCAAGACTGAGATGTCTGAAGTTCTCACAGAGATCTTGAAGGTAGACCCCAACTTTGATAAAgactcatttcttaaacaatgTGAGAAGGACATCATTCCCAACGTCCTGGAGgctatGATTCAAGGAGAGCTTGAGGTCCTCAAGGATTGGTGCTATGAAGCTACTTACAGCCAGTTGGCCCATCCAATCCAGCAAGCTAAAGCAATGGGACTGCAGTTTCACTCGAAGATTCTTGACATCGACAATGTAGATctggccATGGGGAAAATGATGGAACAAGGCCCTGTCCTCATCATCACCTTCCAGGCCCAGCTGGTTATGGTGATCCGTAACACCAAGGGCGAAGTGGTGGAGGGCGACCCGGAGAAAGTCCTCAGGATGATGTATGTTTGGGCTTTGTGTCGAGACCAGGAGGAGTTCAACCCCTATGCTGCCTGGAGGCTGCTGGACATCTCAGCCTCGAGCACGGAGCAGGTCCTCTGAGGAGCTTGaggacacacacgcacaccccacccacacacacacacacacacacacggcccaGGATGGAAGGAAGTGGCTGTGCACACACAATCCACCGTGTGACACTTTCTCTGAAGCATGACTGTACTACATGGGCCGTGTCGTATCACTGGACCTGAGAATGATGTCACATGGTTGGATGCATGTGTGACACTCAGCTGATTGTGTTGCATTTCTGCTgcagatttgtgttcatttcctCCCTACACAGTAGGGTCTGTGGTAAAGCAGTGccatttatatcaaataatgaCCTTAAAGGGATAGTTTACCCGGATATGCTAACACGGCTATCAGCCAGTGGAAAAGCTCAAAAGCCAACATAACTTTAAAGTCCACCGattattagctacattagcattttTGCCCAGACTATATCTTTAATGGCTAAGATttgtataatataatcattCCCGAAAGTTTAATGTCAAATAAAGTATAACTGTAAGAACGTATTTgcttttaatcacatttaaaaatgtggcAAATGTTTGCAAGACTATTCCTTAAACAGGAAATTCTACATCTTGGCAAATAAcatcatttttcagttttttaagatacagtgtgtaatagagtTTTAAAGTGAAGTCAGCTTAAccctgtaattaaaaaaacaatcaggaATGAAATTCTGCTTTTGCCAAGGCATAAACTCACACATCAAAAATGgagcttttaaataaattagaaaagagTTGGAATGTGTAAATGAAGTCTATTGTGAAtgttcaaaataaacacaaatatacttaaaggaaa

Function

symbol description
timm44 Predicted to enable chaperone binding activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport. Predicted to be located in membrane and mitochondrion. Predicted to be active in mitochondrial inner membrane. Orthologous to human TIMM44 (translocase of inner mitochondrial membrane 44).

NR:

description
mitochondrial import inner membrane translocase subunit TIM44

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0071806 protein transmembrane transport biological_process
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity molecular_function

KEGG:

id description
K17804 TIM44; mitochondrial import inner membrane translocase subunit TIM44

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940367.2 True 2248 mRNA 0.45 13 14189261 14203732
XM_034308961.1 False 2224 mRNA 0.44 13 14189452 14203732

Neighbor

gene id symbol gene type direction distance location
ticam1 NA coding upstream 1930 14183219 ~ 14187331 (+)
gipc3 gipc3,LOC108270865,LOC108424935,LOC100702370,LOC102212133,LOC107559818,LOC107678090 coding upstream 676387 13496678 ~ 13512874 (+)
lim2.2 LOC108270866,LOC100701835,LOC102794991,LOC101061816,LOC101468118 coding upstream 720784 13462280 ~ 13468477 (+)
ftsj3 ftsj3 coding upstream 728152 13449459 ~ 13461109 (+)
rpl36 rpl36,LOC106560598 coding upstream 759118 13426670 ~ 13430143 (+)
cers4a cers4 coding downstream 139506 14343238 ~ 14358867 (+)
c11h19orf44 c10h19orf44 coding downstream 179725 14383457 ~ 14390553 (+)
atcaya atcay,LOC108270591,LOC108430235,LOC103374683 coding downstream 259456 14463188 ~ 14469987 (+)
mibp mibp,LOC108271439,LOC103035840,LOC108430237,LOC107734093,LOC107702642,LOC107566367,LOC107698603 coding downstream 269610 14473342 ~ 14477751 (+)
mydgf mydgf,LOC107566370 coding downstream 277825 14481557 ~ 14487812 (+)
G181136 NA non-coding upstream 88274 14097660 ~ 14100987 (+)
G180945 NA non-coding upstream 548298 13629695 ~ 13640963 (+)
G180926 NA non-coding upstream 741077 13447945 ~ 13448184 (+)
G180838 NA non-coding upstream 783006 13401887 ~ 13406255 (+)
G180833 NA non-coding upstream 886964 13299280 ~ 13302297 (+)
G181233 LOC108271251 non-coding downstream 157056 14360788 ~ 14361372 (+)
G181236 calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933 non-coding downstream 171761 14375493 ~ 14379473 (+)
G181252 NA non-coding downstream 205990 14409722 ~ 14410077 (+)
G181300 NA non-coding downstream 233643 14437375 ~ 14438009 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding downstream 460969 14664701 ~ 14665064 (+)
G181175 uhrf1 other upstream 15043 14165026 ~ 14174218 (+)
G180936 NA other upstream 693276 13495590 ~ 13495985 (+)
G180834 NA other upstream 883545 13301255 ~ 13305716 (+)
trnag-gcc_17 NA other upstream 913705 13275486 ~ 13275556 (+)
trnag-gcc_16 NA other upstream 915644 13273548 ~ 13273617 (+)
LOC113531387 ctxn1 other downstream 18486 14222218 ~ 14240541 (+)
LOC113540185 NA other downstream 357823 14561555 ~ 14563010 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other downstream 386148 14589880 ~ 14599979 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other downstream 418811 14622543 ~ 14649685 (+)
pdzk1ip1 NA other downstream 505195 14708927 ~ 14711727 (+)

Expression


Co-expression Network