tm2d1 (tm2d1,LOC107653653,LOC107715116,LOC107669801)


Basic Information

Item Value
gene id tm2d1
gene name tm2d1,LOC107653653,LOC107715116,LOC107669801
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14838497 ~ 14849100 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945146.2
TGACGGTCACGTGATCGCGTCCTTTCCATCATGGCTTCTCTTCAGGATGGTTTGTTTTGCTCTCGGTCTATACAGCGAGCgatatttttcttctctttttgctGGACTTTAATTCAAAGCTCTGCAAATGATGTGGAAAGCTGTGACAACCTCCGACCGGGACAGTATCTTTGCAAAAGCCCTAAAATAGATGATGCAACTCAAGAACCCGAGAACTGCAAGGATCTAGTGGCATGGGTGGAATGCCTTCCTGCACCAAACATCAGCTGCTTGCTATCAAACGGGACCAGGTTCAAGTTCAGTGGGGAGGAGGTTGGATTTAATAAAAGCATCCCATGTCGGAATGTGACTGGCTATTCATATAAAGTAGCTGTGGCTTTGTCCCTCTTCCTGGGATGGCTGGGTGCAGATCGCTTCTATTTGGGTTATCCAGCTCTCGGGCTGCTGAAGTTCTGCACTGTGGGTTTCTGTGGAATTGGAAGTCTGGTGGACTTCATACTGATATCCATGCAGATCGTAGGTCCATCTGATGGTTCGGATTACATCGTGGACTACTACGGAGCGAGGCTCGTACGGCTCTCCATAACAAATGAGACATACAGGCGAACGCAGATCTCTCTCTGAGGAGGTGGACAGAGAGGACAGGATGAAAACCTGACATCCAGGATTGTGTCATATAAATCtcatccttttctcttttcaacTGGGAAGATACATGGACATGCCAGACACctccatgtgtgtgagagagagacagaggcaaagagcgagagagagagagtgagagagagcgtgatTGAGTGAGTAAGTGTTAGGACTGCTTAGGATTGTAAATAGAGACTACAATATGTTATGCTTGTGTTCTCCAAAGTGGATAAGCCCACCTTCATTCCTGCATCTCTTCTTGTCCTCACCATCCATCCTTCTTTCATCTGACTCAGAATGAAGAATGCAGAAGAATGCATATAATTGTTGTGCAATGGAATCTGTCTCAcccaaatttatttaattaaatatccaCCTCAGACTGCAGTGATACACACGTGACACAATTAGACTGTCATCTACAAACTCAGTTATGACGCAAACAGAAATGCAATATGTCTTAGTAACGTTTGGTGTGATTCCATACAAACCTCCTGGGAAGCTGGAAGGTATGCTGAACAGTGCATATACTATTTATGGACAATATATTGGGTTAGATTTTTATTGACATCTGTTATTTGGCAAGAGgaaaactaatttttttctgaaatattcctTTAAGACCTTCTGTTTTGTCATTGTtatttaaatgatgtaaataaagttttacCTATGTG

Function

symbol description
tm2d1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TM2D1 (TM2 domain containing 1).

NR:

description
TM2 domain-containing protein 1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945146.2 True 1322 mRNA 0.43 7 14838497 14849100

Neighbor

gene id symbol gene type direction distance location
tal1 tal1 coding upstream 134409 14696583 ~ 14704088 (+)
ier5 LOC100304758 coding upstream 165767 14670881 ~ 14672730 (+)
LOC113527219 LOC108270689,LOC108429511,LOC107653644,LOC107715111,LOC107588053,LOC103463808,LOC100711005,LOC106955782 coding upstream 226932 14600430 ~ 14611565 (+)
mydgf mydgf,LOC107566370 coding upstream 350685 14481557 ~ 14487812 (+)
mibp mibp,LOC108271439,LOC103035840,LOC108430237,LOC107734093,LOC107702642,LOC107566367,LOC107698603 coding upstream 360746 14473342 ~ 14477751 (+)
frem1b LOC108271303,LOC108429520,LOC107669836,LOC105904425,LOC107728586,LOC107599441 coding downstream 201082 15050182 ~ 15079767 (+)
atpaf1 atpaf1 coding downstream 231820 15080920 ~ 15085382 (+)
rab3b LOC108270584,LOC108429523,LOC103027359,LOC107653655,LOC107592692,LOC107669838 coding downstream 239140 15088240 ~ 15096387 (+)
nrd1b LOC108271269,LOC108429524,LOC100693897,LOC102784242 coding downstream 250215 15099315 ~ 15114363 (+)
axdnd1 axdnd1 coding downstream 265950 15115050 ~ 15126124 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding upstream 173433 14664701 ~ 14665064 (+)
G181300 NA non-coding upstream 400488 14437375 ~ 14438009 (+)
G181252 NA non-coding upstream 428420 14409722 ~ 14410077 (+)
G181236 calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933 non-coding upstream 459024 14375493 ~ 14379473 (+)
G181233 LOC108271251 non-coding upstream 477125 14360788 ~ 14361372 (+)
G181588 NA non-coding downstream 18827 14867927 ~ 14930862 (+)
G181599 NA non-coding downstream 111785 14960885 ~ 14977551 (+)
LOC113533733 NA non-coding downstream 145588 14994688 ~ 15002233 (+)
G181632 NA non-coding downstream 236801 15085901 ~ 15086320 (+)
G181851 NA non-coding downstream 444138 15293238 ~ 15294067 (+)
pdzk1ip1 NA other upstream 126770 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 188812 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 238518 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 275487 14561555 ~ 14563010 (+)
LOC113531387 ctxn1 other upstream 597956 14222218 ~ 14240541 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 819698 15668798 ~ 15673982 (+)
LOC113532318 NA other downstream 1405947 16255047 ~ 16256782 (+)
G182819 NA other downstream 1734203 16583303 ~ 16584943 (+)
G182877 NA other downstream 2064158 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 2272799 17121899 ~ 17189315 (+)

Expression


Co-expression Network