gipc3 (gipc3,LOC108270865,LOC108424935,LOC100702370,LOC102212133,LOC107559818,LOC107678090)


Basic Information

Item Value
gene id gipc3
gene name gipc3,LOC108270865,LOC108424935,LOC100702370,LOC102212133,LOC107559818,LOC107678090
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13496678 ~ 13512874 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946151.2
GCTCggggaaaaagtgtgaagaCGGACTGATGCAGGACGGAGACGCCATGAGCCCACAAACGCAGGACTCAAAGAACTCGACTGGGGAGGAGGAAAGCAGTGTGGTGCCCTCTGCTCCACCATTACCTACTTCACCCCCTTCTCCACCGTGCCAGAGACCGAAATTGATATTTCACACTCAGCTTGCTCATGGAAGTCCTACAGGCCGCATTCATGGCTTCACCAACGTAAAAGAGCTCTATGCCAAGATCGCAGAGGTTTTCAACATTTCTCCCTCTGAGATCCTCTTCTGCACTTTAAATTCACACAAAGTGGACATGCAGAAGCTGCTGGGGGGGCAGATCGGCCTCGAGGACTTCATCTTTGCTCACGTCCGAGGAGAAACCAAAGAGGTGGAGGTCACTAAAACAGAGGACGCCCTTGGCCTGACCATCACCGATAATGGCGCAGGATATGCTTTCATtaagAGGATAAAAGAGGGCAGCACCATTGACCGGCTGAaaaacgtgtgtgtgggtgatcACATCGAGGCCATTAATGACCAGAGCATTGTGGGATGTCGTCATTATGAAGTGGCCAAGATGCTGAAGGAGCAGCCGCGAGGAGAGCCGTTCACTCTCAGACTGGTGGGACCCAAGAAAGCGTTTGACATGATTGGTCAGCGGACACGAGCACCCAAATCCAGCGAGGGCAAAATGGTCAGTGGGAAAGAAACTCTGCGTCTGCGCTCGAAAGGAACGGCGACTGTTCAGGAAGTGCCCAGTGAGTTTGAGGAAAAGGCCATTAAGAAGGTTGATGATCTTCTGGAGAGCTACATGGGCATACGGGATCCTGAACTTGCAACCACAATTGTAGAAGCCGCCAAAGACAAGCAAAATCCAGATGATTTCGCCGAGGCTCTAGACTCTGTCCTGGGGGATTTCGCCTTCCCTGACGTCTTTCTGTTTGACATCTGGGGGGCTCTAGGGGATGTAAAAAATGGCAGAGTTTAGGCCAATTTTTCAACCTGGCTGTGTCTCCCGGTATTCTTACACTGAGACTTACACTGAGTATTATCACAGTATTCTCCTATCAGAtgtaactgctttttttttttttcaaaccttGGTTGCAACTGCCTGTCCATAATTCAACAAGAGATTTAGAGATGTCACTTcagtttcacatgtttattattaaactctGACAGTCCTGAACTCACAGCATAAACTGCAGAACTAACACTGCCCCGGCAAACCCCTGAGTGCAAAGACCAGAAGTATACAGTGTCATTAAACCCGTTTTTTGAAGCAAAAAAATGTCAGAAGACCTCATATATGAACCAGTGACTGGGGAAAACAGTGACTGTGAGATTCTAAAAAACTTATACAAGTTTGGTATTGAATGTTTGCTACTTTATCAGAGGTTCaaattttaattgatttgttaAGCCATGTTTAAAATCAAttgataattataataaaacacaactaTCTCAAAACATTGTTGGTGCAActcacatttacatttgaaaatataCACTATCCTTGTGACGTTACAAAACCGTTTACTGGAAAGTGAGATCACAAAAGCTTAACGATCTCATTTGaaggtatatactgtatgaaaaaGATTTTGGTGAGATTAATATATCCTGGCTCAACTACATTTGGGCAAAGTGTAAGCTTGAGTTTCagtgaaatattaatttaatatttaatgatcAGCAAATGTACACAATGTATTCAGAGTAAAACACTGAATGcttgaaaaacaaaacccatTATTTAAAGTTCAGCATCTGGAAGTGTTTTTCAGACCTGCATGGAAGTGAATATTACTCAATGGCTTTTCTGAACACATCTTTGAGTCACAACATGATGTGCAATTCAGTTACTGTTTATCACTATTTGCCTTGAAAGAGTACTGGCTGATGACCAGGGATGGGAAAAATCCACAGGATCTGTATCCATTTATACTGTTTGAACACTGTGTTTGAGTCTGTCCATGTAAAGGTCACTTCATTATATCCCATAAAAGACCAGGTTGCTTTATAACCACAGCTGTATGGGAGCTGAACTGAATTGGCAAGACTTGACATGAATACTCTTCAGTTTGATCTTTGGGCCTATTATGTCTCTCATGCTACCTAACGTTTGCTTACAAATGAAGGTCTTCTTTTCATGTGCggatattttatgtattgtgtatatatgaaatatgacaTGAATTACTGCAGTAATGTTTGTCTGCATTAAAGACTCGTAGTAGCACATAGAGGCCTGGACTTCTGCACATGTTTTAAAGGGGAACAGTCACATATGGTTATTTTAAGGAGTGGAATGGACTACTCagagcttaaaaaaaagcagccatGATACATACCATTAAAGCCATTTTACTGAAATTGGTCATCGGACTTAACTCCCAAGAAGAAATAAATGTCATGTCATACATAGTGGCATATTAACTTGCTAATTGTATAAAAAGTGGTCATACAAACCTGAAATATAGATTGTAGTTGTTATAGCTGTCTGTGTTCACAGTGGtataggggtgtaacacagtgtaactatctgtatttatatctgttttgtgctccaaatatccatatcagATTTAAACCgtagatgtgtgtgtcagttcctcaacctcaccATGACTCCAGCTCAAAACTGGTCTCAACTTGAGATAACtttttaacaattattattattttttaattcagctcacacagttattatttttgtatgcaGTACACATATGAGAATTACCTTACACAGTTTCACTGTTATGATATCCCTGGAAATTTCCCACACAGTAACACTGCATAATTATGTGGGGCTTAGGATGAATAGTATGCAAGTACATCCAAAGAAATCTATCTATTTCAAAATgtcatatgattttttaaaattttcctcAGAATTGGTGCAGTTGGACTTGATCACATCACTGTTTGACTGAGTGACTGTTCCACTTTAAATGTAATGTGGATTATGGACACTGCATCTTGAACATCACCTTAGTTTCTATGCCATTTATTTATCACAAACAAATTGTGTGGATTTGtcttatcatgttttatttatacactgtatagATATCTTGTACTATTTTCAAAGTGAAGACCTGAAAATGTACAGCATCTTGGAAGTTATGTCACTAAGTTACCAATAAA

Function

symbol description
gipc3 Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 15. Orthologous to human GIPC3 (GIPC PDZ domain containing family member 3).

NR:

description
PDZ domain-containing protein GIPC3-like

GO: NA

KEGG:

id description
K20056 GIPC, SEMCAP; PDZ domain-containing protein GIPC

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946151.2 True 3160 mRNA 0.40 6 13496678 13512874

Neighbor

gene id symbol gene type direction distance location
lim2.2 LOC108270866,LOC100701835,LOC102794991,LOC101061816,LOC101468118 coding upstream 28201 13462280 ~ 13468477 (+)
ftsj3 ftsj3 coding upstream 35569 13449459 ~ 13461109 (+)
rpl36 rpl36,LOC106560598 coding upstream 66535 13426670 ~ 13430143 (+)
LOC113532271 hrh4,LOC103041953,LOC107678092,LOC108424938,LOC107559824 coding upstream 98903 13379796 ~ 13397775 (+)
impact impact coding upstream 128420 13319943 ~ 13368258 (+)
ticam1 NA coding downstream 670345 14183219 ~ 14187331 (+)
timm44 timm44,LOC108441293,LOC107660209,LOC107561596,LOC107704494 coding downstream 676387 14189261 ~ 14203732 (+)
cers4a cers4 coding downstream 830364 14343238 ~ 14358867 (+)
c11h19orf44 c10h19orf44 coding downstream 870583 14383457 ~ 14390553 (+)
atcaya atcay,LOC108270591,LOC108430235,LOC103374683 coding downstream 950314 14463188 ~ 14469987 (+)
G180926 NA non-coding upstream 48494 13447945 ~ 13448184 (+)
G180838 NA non-coding upstream 90423 13401887 ~ 13406255 (+)
G180833 NA non-coding upstream 194381 13299280 ~ 13302297 (+)
G180738 NA non-coding upstream 211608 13201871 ~ 13285070 (+)
G180695 NA non-coding upstream 293530 13136137 ~ 13203148 (+)
G180945 NA non-coding downstream 116821 13629695 ~ 13640963 (+)
G181136 NA non-coding downstream 584786 14097660 ~ 14100987 (+)
G181157 NA non-coding downstream 632999 14145873 ~ 14293381 (+)
G181233 LOC108271251 non-coding downstream 847914 14360788 ~ 14361372 (+)
G181236 calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933 non-coding downstream 862619 14375493 ~ 14379473 (+)
G180936 NA other upstream 693 13495590 ~ 13495985 (+)
G180834 NA other upstream 190962 13301255 ~ 13305716 (+)
trnag-gcc_17 NA other upstream 221122 13275486 ~ 13275556 (+)
trnag-gcc_16 NA other upstream 223061 13273548 ~ 13273617 (+)
trnag-gcc_15 NA other upstream 226949 13269656 ~ 13269729 (+)
G181175 uhrf1 other downstream 652152 14165026 ~ 14174218 (+)
LOC113531387 ctxn1 other downstream 709344 14222218 ~ 14240541 (+)
LOC113540185 NA other downstream 1048681 14561555 ~ 14563010 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other downstream 1077006 14589880 ~ 14599979 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other downstream 1109669 14622543 ~ 14649685 (+)

Expression


Co-expression Network