fstl3 (fstl3,LOC107728592,LOC107687713,LOC107655223,LOC107569933)


Basic Information

Item Value
gene id fstl3
gene name fstl3,LOC107728592,LOC107687713,LOC107655223,LOC107569933
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16056916 ~ 16063110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946320.2
TTAGACTAAACTCCGGTATATATTTTCGAAACCGCTTTTATCGTCTATCATGCTGTTTTCATTAACTTCGGCGTGAATGAGATTCGGTGCGTGGGAGTTTTCTGCCTCATATCCGAGAAGTTACACGAAGAGCgaggttttaaaaagaaaaaaataaaactacccTGGAACAACCATCGCCCGtcctgactcactcactcaaagCTAAAGTATTTATCTGGAGGCGGGCcgccatcactcactcactcactcccagCCCAAACCATTCACGTAAACGGGGGCAGCGCTTCGACCAGACCCCCCTTTatctgtgtaaatatttgaGAGGGAGTCTCATTGCTCGAAACATCTGTGTGTGAAGGGTTTGAAGTAACTTCTCATCATCATGAACTTGTTTTCGGCGCTCCACTGTGTGCTGCTCATCTCGCTGTGTGGAAATCTCGCTAAGCACCGAGCTAACGCGGGCATGTGCTGGCTGCAGCAGGGCCAAGAGCAGCGCTGTGACATGGTGCTGATGCGTGGTGTGAGCAGGGAGGAGTGCTGCGCCGGAGGCCGTTTAGACACAGCCTGGTCCAACACCAGCCTGCCCATCAACGAAGTCAGTCTGCTGGGCTTCCTGGGCATCGTGTCCTGCAAACCCTGCAAAGAGACATGCGAAGGGGTGAAGTGCGGCTTGGGGAAGGTGTGTAGGATGAAGGGTGGCCGTCCTCAGTGCATCTGCTCGCCAGACTGTTCCAACATCTCCAGAAAGCATGCTGTCTGTGGGAGCGATGGCACCACGTATAAAGATGAGTGTGCCCTCCTGATGGCCCGCTGCAGAGGCCACCCTGACCTCGAGATCATGTACCAAGGAGAGTGCAAAAAGTCATGCTCCAATGTGGTGTGCCCCGGCACCCACACCTGCGTGACGGACCAGACCAACAGTGCCCACTGTGTGATGTGCCGCACGGCTCAGTGCCCAATGCCCATGCTCAGTGGTCAGACCATTTGCGGCAACGATAACATCACCTACCCAAGTGCCTGCCATTTGCGCCGTGCCACCTGCTTCTTCGGTCGCTCCATAGGAGTGCGCCATTACGGCCACTGCAGGAGTAAAGAAGGTAGTGAGGAGAATTCGCTCTTTTAGGCATCTTGGCATTGCATGAGACCAGCTTGTACAACTGATGACAGCACAGTTTATGTGAGCGAGTTGTAACCTCCCGGCAGAGTCATACGTTCTGATAAATGAAGTGCTAGATGCATGCAGTACATACTTCAAGAGAAATGTGCACCTCTCTTGCTCTCTGGTATGGCATTTTAACAAATGAAAGATTTCAAGAGATAAACTGTTGTTCGATTTGGACCTGACCTTGTGCATATTGTAAATACATTACTGCTCTTATTTATTGGAGAAAACTGCTTCtccaaacatttgtttttttatttatagttccTTTGGTTTGAGCTGCATATTCCCAGATCGACTGCTTTCAAATtgatatttattgtgttttcatGTACAGACCAGTTAGAGTATAATACTAGCTCATGTAAAAATTAGGTCACActataatgtaatgaaatgccATGCCTTGCTATGCAGCTAACTCCAAAGATAAATCATATTATAGCATTGTATATTATAGCATAGCTTAAAGAAACGTCCCCAGATGCGCCTCTTTCAGAAAGCCATGCACCAGGAGAGCCGGCATTATTACACACTCTGGAGACgatttattacagaaataaagccaaagaggagtgtgtgtgctgttcgAGTTCCGCTCCCTCACGTCTGGAGGTTAAAGAGTTTGCAGACATAGAACCAGAGCTTCTAGGCCTGATGCTATGCCACTTGCACGAACGCTACATTGGCATGAAACCTAAAGCAAGCTGCTCGCTGAGCAATGAAATTACCAGCTTCAGTCTAAtggcattgtttttttttctgagcaggCTGGGTCAGTCCAAAAAATGTTCGTCCATTGTACTGTTTTATGGTTCTGGCGTTATTGTTGCGTGAGTGTGCACATTTGTGAAGTACTtgagtgcattattttcgtaaTGCaaaccattctttttttttttttttttttaacaatgataTTTAGTGAACCTCCACATAAGTACTATGGTCATCTGTTATGTTTTGGAAATAAGTGACAAGACAGTGATGTAAGCCTACTCATTAAAAGTTGTGTACAAAACTAATTTTTATGAACCACATATATATccttgtaaatatatttttctttttgcaatCCTTGTGTATCTACTGTGAAATTTCTTAATGTATCgacttatttttgtattttaatactgACATTTTAACTCTAATTAAAAGAGACTCCTTGA
>XM_026947079.2
AAGTAGCTTTAGACTAAACTCCGGTATATATTTTCGAAACCGCTTTTATCGTCTATCATGCTGTTTTCATTAACTTCGGCGTGAATGAGATTCGGTGCGTGGGAGTTTTCTGCCTCATATCCGAGAAGTTACACGAAGAGCgaggttttaaaaagaaaaaaataaaactacccTGGAACAACCATCGCCCGtcctgactcactcactcaaagCTAAAGTATTTATCTGGAGGCGGGCcgccatcactcactcactcactcccagCCCAAACCATTCACGTAAACGGGGGCAGCGCTTCGACCAGACCCCCCTTTatctgtgtaaatatttgaGAGGGAGTCTCATTGCTCGAAACATCTGTGTGTGAAGGGTTTGAAGTAACTTCTCATCATCATGAACTTGTTTTCGGCGCTCCACTGTGTGCTGCTCATCTCGCTGTGTGGAAATCTCGCTAAGCACCGAGCTAACGCGGGCATGTGCTGGCTGCAGCAGGGCCAAGAGCAGCGCTGTGACATGGTGCTGATGCGTGGTGTGAGCAGGGAGGAGTGCTGCGCCGGAGGCCGTTTAGACACAGCCTGGTCCAACACCAGCCTGCCCATCAACGAAGTCAGTCTGCTGGGCTTCCTGGGCATCGTGTCCTGCAAACCCTGCAAAGAGACATGCGAAGGGGTGAAGTGCGGCTTGGGGAAGGTGTGTAGGATGAAGGGTGGCCGTCCTCAGTGCATCTGCTCGCCAGACTGTTCCAACATCTCCAGAAAGCATGCTGTCTGTGGGAGCGATGGCACCACGTATAAAGATGAGTGTGCCCTCCTGATGGCCCGCTGCAGAGGCCACCCTGACCTCGAGATCATGTACCAAGGAGAGTGCAAAAAGTCATGCTCCAATGTGGTGTGCCCCGGCACCCACACCTGCGTGACGGACCAGACCAACAGTGCCCACTGTGTGATGTGCCGCACGGCTCAGTGCCCAATGCCCATGCTCAGTGGTCAGACCATTTGCGGCAACGATAACATCACCTACCCAAGTGCCTGCCATTTGCGCCGTGCCACCTGCTTCTTCGGTCGCTCCATAGGAGTGCGCCATTACGGCCACTGCAGGAGTAAGGACTAAACACCTGTGGATTAAACACCTTCCATATACGGTAAAGAAGGTAGTGAGGAGAATTCGCTCTTTTAGGCATCTTGGCATTGCATGAGACCAGCTTGTACAACTGATGACAGCACAGTTTATGTGAGCGAGTTGTAACCTCCCGGCAGAGTCATACGTTCTGATAAATGAAGTGCTAGATGCATGCAGTACATACTTCAAGAGAAATGTGCACCTCTCTTGCTCTCTGGTATGGCATTTTAACAAATGAAAGATTTCAAGAGATAAACTGTTGTTCGATTTGGACCTGACCTTGTGCATATTGTAAATACATTACTGCTCTTATTTATTGGAGAAAACTGCTTCtccaaacatttgtttttttatttatagttccTTTGGTTTGAGCTGCATATTCCCAGATCGACTGCTTTCAAATtgatatttattgtgttttcatGTACAGACCAGTTAGAGTATAATACTAGCTCATGTAAAAATTAGGTCACActataatgtaatgaaatgccATGCCTTGCTATGCAGCTAACTCCAAAGATAAATCATATTATAGCATTGTATATTATAGCATAGCTTAAAGAAACGTCCCCAGATGCGCCTCTTTCAGAAAGCCATGCACCAGGAGAGCCGGCATTATTACACACTCTGGAGACgatttattacagaaataaagccaaagaggagtgtgtgtgctgttcgAGTTCCGCTCCCTCACGTCTGGAGGTTAAAGAGTTTGCAGACATAGAACCAGAGCTTCTAGGCCTGATGCTATGCCACTTGCACGAACGCTACATTGGCATGAAACCTAAAGCAAGCTGCTCGCTGAGCAATGAAATTACCAGCTTCAGTCTAAtggcattgtttttttttctgagcaggCTGGGTCAGTCCAAAAAATGTTCGTCCATTGTACTGTTTTATGGTTCTGGCGTTATTGTTGCGTGAGTGTGCACATTTGTGAAGTACTtgagtgcattattttcgtaaTGCaaaccattctttttttttttttttttttaacaatgataTTTAGTGAACCTCCACATAAGTACTATGGTCATCTGTTATGTTTTGGAAATAAGTGACAAGACAGTGATGTAAGCCTACTCATTAAAAGTTGTGTACAAAACTAATTTTTATGAACCACATATATATccttgtaaatatatttttctttttgcaatCCTTGTGTATCTACTGTGAAATTTCTTAATGTATCgacttatttttgtattttaatactgACATTTTAACTCTAATTAAAAGAGACTCCTTGA

Function

symbol description
fstl3 Predicted to enable activin binding activity. Predicted to be involved in cell differentiation; negative regulation of activin receptor signaling pathway; and regulation of BMP signaling pathway. Predicted to be active in extracellular space. Orthologous to human FSTL3 (follistatin like 3).

NR:

description
PREDICTED: follistatin-related protein 3

GO: NA

KEGG:

id description
K23913 FSTL3; follistatin-related protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946320.2 False 2334 mRNA 0.45 5 16056924 16063110
XM_026947079.2 True 2384 mRNA 0.45 5 16056916 16063110

Neighbor

gene id symbol gene type direction distance location
cbarpb cbarp coding upstream 26065 16012468 ~ 16030851 (+)
cilp2 cilp2,LOC107728576,LOC107719612,LOC107599460,LOC107655229,LOC107687716 coding upstream 201197 15840997 ~ 15855719 (+)
yjefn3 yjefn3,LOC108271278,LOC108429551,LOC103041169,LOC107687717 coding upstream 217936 15805286 ~ 15838980 (+)
gatad2ab LOC108271147,LOC108429549 coding upstream 256299 15776686 ~ 15800617 (+)
mef2b mef2b coding upstream 364806 15675692 ~ 15692110 (+)
bsg NA coding downstream 11452 16074562 ~ 16085133 (+)
hcn2b hcn2,hcn2b,LOC108429559 coding downstream 24094 16087204 ~ 16122109 (+)
fgf22 fgf22,LOC106613753,LOC107569930,LOC107655219,LOC107719646,LOC107687712 coding downstream 116432 16179542 ~ 16207820 (+)
LOC113538485 LOC100304649 coding downstream 148236 16211346 ~ 16233837 (+)
LOC113538695 NA coding downstream 184617 16247727 ~ 16249191 (+)
G182190 NA non-coding upstream 47681 16006054 ~ 16009235 (+)
G182116 NA non-coding upstream 66506 15988630 ~ 15990410 (+)
G182115 NA non-coding upstream 68935 15938100 ~ 15987981 (+)
G182167 NA non-coding upstream 163389 15893292 ~ 15893527 (+)
G182152 cirbp,LOC108271114 non-coding upstream 171091 15873010 ~ 15885825 (+)
G182483 NA non-coding downstream 196948 16260058 ~ 16260316 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding downstream 645515 16708625 ~ 16725527 (+)
LOC117598387 NA non-coding downstream 789298 16852408 ~ 16857137 (+)
G182906 NA non-coding downstream 897549 16960659 ~ 16961299 (+)
G182910 NA non-coding downstream 926209 16989319 ~ 16989519 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 382934 15668798 ~ 15673982 (+)
pdzk1ip1 NA other upstream 1345189 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 1407231 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 1456937 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 1493906 14561555 ~ 14563010 (+)
LOC113532318 NA other downstream 191937 16255047 ~ 16256782 (+)
G182819 NA other downstream 520193 16583303 ~ 16584943 (+)
G182877 NA other downstream 850148 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 1058789 17121899 ~ 17189315 (+)
LOC113528769 klc4 other downstream 1133170 17196280 ~ 17222532 (+)

Expression


Co-expression Network