rrp36


Basic Information

Item Value
gene id rrp36
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24649027 ~ 24653190 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947141.2
CATTCACTGGCGTAACCTCATTACCCGGAAGTACTTGCTGCTGGCTCAAGGCTGCATGGCGCTGTGTTGATTATTACTAGCAGAATTTCGATCACGATGGCGCCCAAGAAAAGACAAACGTCTCTTAAACAAAATCTCCAGTTTGCAAGTCATGTTCAGGTGAAAAGACCTGAAGCtcatgaggatgaggatgaggatgaggatgctTTAGAGATGGAAAGAAACTTTGCTTTGTTCAGTAAACGCGGTCCTGTGCTACAGTCCGAGCTGACTGAGAAGGACGAGGAGGAAACGAGTGGTGAGGAATCTACTGAAGCagctgaggatgaggaagatCATGACACTGAGCAGTCTGTAAAAGAGCAAGCTGAGAGTACTGACATGACCGGATCAGAGGATTCCCCTAACCAGACACACTGCAGGCAGAATGACCCCACAGCCAGGTCACACACCAGGACTGAGTTTACACCAGATCTGTCAACAATGTCATTTGAAGAGATTATGAGGTTACAAAGAAAAGTTGGAACTAAGGCATGTAATAAACTTACACATgaggcaaaaaagaaaaagcagaattCAGAACCTGCAAAGCGAGTGACCAGGGACAGACCCCAAGAGATTTCGGCCAAGAAACCAGTTTCTTTTCTTAGAAAAGTAGGATCCATTAAGGAACCTATTTTGAGGGATCCTCGTTTTGATGATCTTTCTGGTGAATTTAAACCAGAAGTGTTCAGCCAGACATACAAATTCATCAATGATATCAGACAACGAGAAGCAGAGatggtgaaaaaaaagctgaagaaaGTAAAATctgatgcaaaaaaagaagaattgaAATCTTTACTAAAGAGAATGGAGAACCAAAAGCGTAACCATCAAAGACaagagcagcagagagagaaggagcgtTGTTATAAGAGGAAGCAGAGAGCGCTGGTGGGACATGGGCATAGACCTTTTTACCTCAAGAAATCTGAGAAGAAGAAACTGCAATTGGCCGAGAAGTACCACGAGCTGAAAAAGAGTGGGAAGCTGGAGAATTTCTTGAGCAAGAAGCGGAAACGAAATGCTGTTAAGGACCGCAGGAAGCTGCCGTGAAAAACAGAATGTGGACCAGTCAGGTCAAATAAGTGGAACTTGAACACATTCTGTTGGACCGCCTTTGTATACGACAATGCAGAGTTATAGTGTTCTCAAAGGACCTCTCATAATGACAGTTTCTGGTTGATTTATTGTACAGAACAATTGAACATTACATTCTTTGCTTatggaaaataaagaaaatgaacagtATTTTGATACACTGGGGTAATTTAAAGTATGTGCGCTACTTTGAAGCCAGCAGTAGATGGAGCTATTGGACTTCTGTATACTTTTTCTTCCAAAACTTCAAATATGGGACATTTTATATGGCCTATATGCTGTCATTTTGACCCAGTAGTAAAGTTTGGTCATCTTTGCTTGACTGCCAACCTTCATCCAGACATTAATCCAACCTTTTAAAGAACTGTTTCATTTGCTAAAGCAGCTGctattaaaaatgcataaatacacATGCAA

Function

NR:

description
ribosomal RNA processing protein 36 homolog

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14795 RRP36; ribosomal RNA-processing protein 36

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947141.2 True 1560 mRNA 0.42 8 24649027 24653190

Neighbor

gene id symbol gene type direction distance location
amh amh coding upstream 91033 24554661 ~ 24557994 (+)
dot1l dot1l coding upstream 100820 24520342 ~ 24548207 (+)
LOC113547073 LOC108270825 coding upstream 178162 24461882 ~ 24470865 (+)
onecut3a LOC108270794 coding upstream 267713 24338220 ~ 24381314 (+)
LOC113547074 NA coding upstream 316357 24323165 ~ 24332670 (+)
tmem59l tmem59l,LOC108439280,LOC107586396,LOC108262047 coding downstream 3714 24656904 ~ 24668500 (+)
ankrd24 LOC108270748,LOC107586440 coding downstream 31419 24684609 ~ 24704908 (+)
LOC113547059 egln1 coding downstream 89921 24743111 ~ 24765317 (+)
vps13c vps13c coding downstream 156639 24809829 ~ 24913123 (+)
rcn1 rcn1,LOC107690795,LOC107719795,LOC107728085,LOC107662342 coding downstream 262426 24915616 ~ 24930743 (+)
G187286 fkbp8 non-coding upstream 2365 24642759 ~ 24646662 (+)
G187268 NA non-coding upstream 59324 24589326 ~ 24589703 (+)
G187265 LOC108270831 non-coding upstream 72794 24575015 ~ 24576233 (+)
G187258 NA non-coding upstream 96713 24525684 ~ 24552314 (+)
G187257 NA non-coding upstream 136859 24511672 ~ 24512168 (+)
G187294 NA non-coding downstream 52977 24706167 ~ 24707504 (+)
G187309 NA non-coding downstream 83419 24736609 ~ 24737071 (+)
G187316 katnb1 non-coding downstream 120575 24773765 ~ 24774186 (+)
G187276 NA non-coding downstream 150581 24803771 ~ 24806565 (+)
G187340 NA non-coding downstream 278455 24931645 ~ 24932046 (+)
oaz1a oaz1 other upstream 80384 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 438264 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2268007 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 2690068 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 3383972 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 878555 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 1532672 26185862 ~ 26212115 (+)
G188164 NA other downstream 1553752 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 1607340 26260530 ~ 26352035 (+)

Expression


Co-expression Network