rcn1 (rcn1,LOC107690795,LOC107719795,LOC107728085,LOC107662342)


Basic Information

Item Value
gene id rcn1
gene name rcn1,LOC107690795,LOC107719795,LOC107728085,LOC107662342
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24915616 ~ 24930743 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947178.2
TTTCGTGAGATTACGCGTCATCCTACAACGtggcgccacacacacacacgcgcgcgcgcactcactctcacacacacacacacacacacacacacagagccaacagcagagtgtgtgagcaggttTAAAGCTGCGGGGAGGCTGGCTcggtgtgtgagacagtgtgatatAAGCGGGTTTAAAGGAGAAGCCCCTGAATGAGAGGTTGAGGAGCTGAGGGATGAACTGATGAACTGATGAACTGCGCTCTTCCTCTTCATGCTGTAAATCTGCTGCACTGAGGCCGGAGCGCGCGCTGAGTCAGGGGCACTCGGAGCCCCGCTGGGGtgtgttttgtacctttaatcaCCGTAAGAAGCAAGTAGTTTGTACACAACAGGTCGGGCAGTTTGGACAGTGTTAACAGCCATGCACGCACTGGGTGtagtgtgtgtcgtgtgtgtgctgctgtgtgtggtgGATCTGAAGCCCACAGTGAGAAAGGACAGAATTCACCATGAAGCCGAACTTAGCCGGAAACCGCACGCGGACCAGCACGCGGACCAGCAGAGCCTGCAGTTCGACCATGAAGCTTTTTTGGGAAAAGAAGAGGCGAAGACATTCGACCAGCTGagtccagaggagagcagagacaGACTGAGtAAGATTGTGGATCGTATCGATAGTGATGCTGATGGATTCATAACTTCTGACGAGCTGAAGCTTTGGATTAAACGCGTTCAAAAACGCTATGTTTATGAGAACGTTGCTAAAATATGGCGTGACTACGACCTGAACAAAGACAATGCGATTGCCTGGGAGGAGTACAAACAGGCCACCTATGGATATTACCTTGCGAACCCAGAAGAGTTTGCGGATTCGTCTGATCAGTTCAGCTTTAAGAAGATGCTGCCACGAGATGAGCGCAGATTTAAAGCAGCTGATCTGAATGGAGATGAGCGAGCAGAGAGGGATGAGTTCACTGCGTTCCTCCATCCTGAGGAATTTGAGCACATGAGGGACATTGTTGTCCTGGAGACATTGGAGGACATCGATAAGAACGGAGACGGTTACGTGGATGAAGACGAATACATCGcggACATGTTTGCACATGAAGATGGTGGGCCTGAACCAGACTGGGTGAAAACTGAGAGAGATCAGTTTTCTGATTTCAGAGATCTGAATAAAGATGGGAAGATGGATGTGGAGGAGATTCGTCACTGGATTCTTCCTCAGGATTACGATCATGCTCAGGCTGAGGCACGACACCTTCTGTATGAGTCCGACACTGATAAGGATCAGATGCTGACAAAAGAAGAGATTCTGCAGAACTGGAACATGTTTGTAGGAAGTCAAGCGACAAACTATGGAGAAGATCTGACCAGAAACCATGATGAGCTCTGAACACAATATAATCAAGAGCAATAATCACTTTGCATTTCTACATTCACATGATTAATAACATCTTTAAGTACATGAACTATGGACACACAATCGGTAATCACTAAAACATTATTAGGATGTGAAATCCCAGCACTTTCTCCAGGAGTGTCTGATTGACAGATCTACAGATTTGCAGATCTCTAATCTACCTCAGTATTACTCAGTGTCCTTAGTGCCATTCATGgctttttcttctgtttgtgAGTGGGTTAGAGACTAACTGCAAGTTTTCCACAGATCAATTTTGTTTAGTTAGGTCTTTGTAAAGATCTGTATAATCAGTCTGTTCtgtaaagtgtgttttgtgtatgtttattgTGCTTTAGTGTTATTTACTCTTGAGGAAACAGTGTTACATAGTCAATTACAAACAGAACATTACAGTATGAggttttttaatctttatgtCAGTTTTGAGCTTTGATTCTggtcttattttaaaaacagttttaactTTTTACTCAGAAGTTTATATTCACTACAACTTTTATGGATTCATTTACCAGATAATACCAGTAAAATTTTAGCATCATGCACTGGTTACTAATGCAGTGTTGCCGAGCAATTAGTGACACTGCAGTTGATTTTCATGACAAATAAACTATGACTATTCTGCA

Function

symbol description
rcn1 Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axial mesoderm; chordo neural hinge; epidermis; head; and pectoral fin. Orthologous to human RCN1 (reticulocalbin 1).

NR:

description
PREDICTED: reticulocalbin-1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23898 RCN1; reticulocalbin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947178.2 True 2039 mRNA 0.44 6 24915616 24930743

Neighbor

gene id symbol gene type direction distance location
vps13c vps13c coding upstream 2493 24809829 ~ 24913123 (+)
LOC113547059 egln1 coding upstream 150299 24743111 ~ 24765317 (+)
ankrd24 LOC108270748,LOC107586440 coding upstream 210708 24684609 ~ 24704908 (+)
tmem59l tmem59l,LOC108439280,LOC107586396,LOC108262047 coding upstream 247116 24656904 ~ 24668500 (+)
rrp36 NA coding upstream 262426 24649027 ~ 24653190 (+)
zdhhc13 LOC108270773 coding downstream 19671 24950414 ~ 24984205 (+)
immp1l immp1l,LOC107719794,LOC107594745 coding downstream 227662 25158405 ~ 25170812 (+)
e2f8 e2f8 coding downstream 257550 25188293 ~ 25199986 (+)
nav2a nav2,LOC106561918 coding downstream 273376 25204119 ~ 25326654 (+)
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding downstream 427240 25357983 ~ 25383000 (+)
G187276 NA non-coding upstream 109051 24803771 ~ 24806565 (+)
G187316 katnb1 non-coding upstream 141430 24773765 ~ 24774186 (+)
G187309 NA non-coding upstream 178545 24736609 ~ 24737071 (+)
G187294 NA non-coding upstream 208112 24706167 ~ 24707504 (+)
G187286 fkbp8 non-coding upstream 268954 24642759 ~ 24646662 (+)
G187340 NA non-coding downstream 902 24931645 ~ 24932046 (+)
G187527 NA non-coding downstream 57136 24987879 ~ 24988093 (+)
G187563 NA non-coding downstream 190504 25121247 ~ 25122115 (+)
G187612 NA non-coding downstream 245065 25175808 ~ 25176089 (+)
G187668 NA non-coding downstream 341533 25272276 ~ 25272599 (+)
oaz1a oaz1 other upstream 346973 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 704853 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2534596 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 2956657 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 3650561 21252145 ~ 21265055 (+)
LOC113523924 nell1 other downstream 601002 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 1255119 26185862 ~ 26212115 (+)
G188164 NA other downstream 1276199 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 1329787 26260530 ~ 26352035 (+)

Expression


Co-expression Network