LOC113547073 (LOC108270825)


Basic Information

Item Value
gene id LOC113547073
gene name LOC108270825
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24461882 ~ 24470865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947277.2
GGGTAGCATTAATAACACGTAAGAGGCGgacagacagatacatagaACTCATTGCAACACTAACACCAAAGAAGCCACATGCTAATAAGCACATCACCCGATTAACACTCTTTGTCAGGAGCAACACACAGTTCACATTCTGTTAAGAGTGGGTACAGGACCAGCGGCAACTGACATTAGTTGGCTGAAGAACATCCACCTTAATATCGATGTTTGTAACTCAGTGAGGTTTTGTACACAAAAGGTTTGCATACTGAGAGGTTGACTGAGAGTCTCAGCACAGGCTTTCTCCAAGTACCACTTACAAATGTACTGACAGATAGCAAGCACTTCTGAAGCAGAGGAGTTCTTCAATCTGCCATTGTTGGAAAGGATGCAGTCTGCATTCTCAAGCCCCAGGAGGGATGCTGAGAAAGAGTCTGAGGAGCCATCTCATAGAGGTCTAGGCTTGCGTCGCAAACGTGAATTTACACCAGAAGAGAAAAAGGATGCCTCTTACTGGGAAAAACGTCGCAAGAACAATGAGGCAGCCAAGCGTTCAAGAGAGAAGCGCAGAGCAAATGACTTCATGCTGGAGACACGGCTAGTGGCACTGAGTGAGGAAAATGCAGCTCTACGAGCTGAGCTACTGGCTTTGAACCTTCGATATGGCCTGATCAGCTCTAATTGTCCTTACACATCACATCAGAGGAGCTTCCTTCAGATGCATTCATACTTTGCTCAAACATCAAACAACTACCCAGACAGAGAGCTTTGGGAAAGGGACAAAATGAGTCAGGAGTCTTCCCAATGGCCTGGATACCAGCAAGCAACTGAGGCCATAGCAGCTCATTATGGCTCAAACTTTGTTGCCTCACACTCCTTCCCCATCAACAGGGCCTATTCTTACCTTCCGGATGTACCGAGTTTTGTTCCGTCTACAAGCACACCCGTGGTCTTAGCTCCTGTGTTCCCACCACTGGCTGCCTCTTTTCCAGAAATTCCAGTGTTAAATCCAGTGAATCAGAGAACAACAATACACAAGGAGGTTGAGCAGCAGCCACCAGCCAATAGCAGTGCTATGCTGCCTCACAAGCTCAGGCTAAAGAATCCAAgatcagcaaagaaaaaagaagacagaatCTCACCTACATCCCCACTCTCAATATATGTATCCGGCTAAAGAAAGATGCCTGATAAATGCTACATGGTAACA
>XM_026947279.2
ggaaacaAAGCTAACACATTTCTTCACTGAGTCTTAATGTTAATTACAGCAAGTTTTTTGACAGCATGGTTTGCATACTGAGAGGTTGACTGAGAGTCTCAGCACAGGCTTTCTCCAAGTACCACTTACAAATGTACTGACAGATAGCAAGCACTTCTGAAGCAGAGGAGTTCTTCAATCTGCCATTGTTGGAAAGGATGCAGTCTGCATTCTCAAGCCCCAGGAGGGATGCTGAGAAAGAGTCTGAGGAGCCATCTCATAGAGGTCTAGGCTTGCGTCGCAAACGTGAATTTACACCAGAAGAGAAAAAGGATGCCTCTTACTGGGAAAAACGTCGCAAGAACAATGAGGCAGCCAAGCGTTCAAGAGAGAAGCGCAGAGCAAATGACTTCATGCTGGAGACACGGCTAGTGGCACTGAGTGAGGAAAATGCAGCTCTACGAGCTGAGCTACTGGCTTTGAACCTTCGATATGGCCTGATCAGCTCTAATTGTCCTTACACATCACATCAGAGGAGCTTCCTTCAGATGCATTCATACTTTGCTCAAACATCAAACAACTACCCAGACAGAGAGCTTTGGGAAAGGGACAAAATGAGTCAGGAGTCTTCCCAATGGCCTGGATACCAGCAAGCAACTGAGGCCATAGCAGCTCATTATGGCTCAAACTTTGTTGCCTCACACTCCTTCCCCATCAACAGGGCCTATTCTTACCTTCCGGATGTACCGAGTTTTGTTCCGTCTACAAGCACACCCGTGGTCTTAGCTCCTGTGTTCCCACCACTGGCTGCCTCTTTTCCAGAAATTCCAGTGTTAAATCCAGTGAATCAGAGAACAACAATACACAAGGAGGTTGAGCAGCAGCCACCAGCCAATAGCAGTGCTATGCTGCCTCACAAGCTCAGGCTAAAGAATCCAAgatcagcaaagaaaaaagaagacagaatCTCACCTACATCCCCACTCTCAATATATGTATCCGGCTAAAGAAAGATGCCTGATAAATGCTACATGGTAACA
>XM_034308851.1
CTGTGGTTAGCAAGGTccactttaaaaggaaacaAAGCTAACACATTTCTTCACTGAGTCTTAATGTTAATTACAGCAAGTTTTTTGACAGCATGGTATGTGAATATTATGCATTTTGTAGTGGCAATGTTATTTTAAGTTTCTAACTGGGAGTTACTCGatgaatattattaaaaccAAAACCGACCCAGACACCCACAGAGCTTCTTATGTCTAACCCATCTGACTGGTTTGCATACTGAGAGGTTGACTGAGAGTCTCAGCACAGGCTTTCTCCAAGTACCACTTACAAATGTACTGACAGATAGCAAGCACTTCTGAAGCAGAGGAGTTCTTCAATCTGCCATTGTTGGAAAGGATGCAGTCTGCATTCTCAAGCCCCAGGAGGGATGCTGAGAAAGAGTCTGAGGAGCCATCTCATAGAGGTCTAGGCTTGCGTCGCAAACGTGAATTTACACCAGAAGAGAAAAAGGATGCCTCTTACTGGGAAAAACGTCGCAAGAACAATGAGGCAGCCAAGCGTTCAAGAGAGAAGCGCAGAGCAAATGACTTCATGCTGGAGACACGGCTAGTGGCACTGAGTGAGGAAAATGCAGCTCTACGAGCTGAGCTACTGGCTTTGAACCTTCGATATGGCCTGATCAGCTCTAATTGTCCTTACACATCACATCAGAGGAGCTTCCTTCAGATGCATTCATACTTTGCTCAAACATCAAACAACTACCCAGACAGAGAGCTTTGGGAAAGGGACAAAATGAGTCAGGAGTCTTCCCAATGGCCTGGATACCAGCAAGCAACTGAGGCCATAGCAGCTCATTATGGCTCAAACTTTGTTGCCTCACACTCCTTCCCCATCAACAGGGCCTATTCTTACCTTCCGGATGTACCGAGTTTTGTTCCGTCTACAAGCACACCCGTGGTCTTAGCTCCTGTGTTCCCACCACTGGCTGCCTCTTTTCCAGAAATTCCAGTGTTAAATCCAGTGAATCAGAGAACAACAATACACAAGGAGGTTGAGCAGCAGCCACCAGCCAATAGCAGTGCTATGCTGCCTCACAAGCTCAGGCTAAAGAATCCAAgatcagcaaagaaaaaagaagacagaatCTCACCTACATCCCCACTCTCAATATATGTATCCGGCTAAAGAAAGATGCCTGATAAATGCTACATGGTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947277.2 True 1195 mRNA 0.46 2 24461882 24470865
XM_026947279.2 False 1019 mRNA 0.46 2 24464582 24470865
XM_034308851.1 False 1180 mRNA 0.45 2 24464555 24470865

Neighbor

gene id symbol gene type direction distance location
onecut3a LOC108270794 coding upstream 80568 24338220 ~ 24381314 (+)
LOC113547074 NA coding upstream 129212 24323165 ~ 24332670 (+)
p3h2 p3h2,LOC107560692 coding upstream 142784 24275329 ~ 24319098 (+)
ccdc50 ccdc50,si:ch73-6k16.1,LOC108438764 coding upstream 198130 24239827 ~ 24263752 (+)
uchl5 uchl5 coding upstream 232515 24212670 ~ 24229367 (+)
dot1l dot1l coding downstream 49477 24520342 ~ 24548207 (+)
amh amh coding downstream 83796 24554661 ~ 24557994 (+)
rrp36 NA coding downstream 178162 24649027 ~ 24653190 (+)
tmem59l tmem59l,LOC108439280,LOC107586396,LOC108262047 coding downstream 186039 24656904 ~ 24668500 (+)
ankrd24 LOC108270748,LOC107586440 coding downstream 213744 24684609 ~ 24704908 (+)
G186949 NA non-coding upstream 258180 24153115 ~ 24203702 (+)
G186950 NA non-coding upstream 259316 24193341 ~ 24202566 (+)
G186976 NA non-coding upstream 275428 24161268 ~ 24186454 (+)
G186977 NA non-coding upstream 288248 24162289 ~ 24173634 (+)
G186951 NA non-coding upstream 299646 24155780 ~ 24162236 (+)
G187257 NA non-coding downstream 40807 24511672 ~ 24512168 (+)
G187258 NA non-coding downstream 54819 24525684 ~ 24552314 (+)
G187265 LOC108270831 non-coding downstream 104150 24575015 ~ 24576233 (+)
G187268 NA non-coding downstream 118461 24589326 ~ 24589703 (+)
G187286 fkbp8 non-coding downstream 171894 24642759 ~ 24646662 (+)
glrx2 glrx2 other upstream 251119 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 2080862 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 2502923 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 3196827 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 3251343 21189248 ~ 21210539 (+)
oaz1a oaz1 other downstream 92535 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 1060880 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 1714997 26185862 ~ 26212115 (+)
G188164 NA other downstream 1736077 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 1789665 26260530 ~ 26352035 (+)

Expression


Co-expression Network