psmd14 (psmd14,psde,LOC107563735)


Basic Information

Item Value
gene id psmd14
gene name psmd14,psde,LOC107563735
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21532681 ~ 21552267 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308416.1
TGGTATGGTTGCAAGCTTCACTGTGCTAATTCGGGCTGATTCATTGTAGACCTGCTGAAGCTTAGCACACGTTCTGAGACGGGTTTTAAATAATACAGattTCAAATGGACCGGCTGCTGAGGCTTGGAGGTGGGATGCCTGGACTGGGACAGGGTCCCCCTACAGACGCCCCTGCTGTGGACACAGCTGAACAGGTGTACATCTCCTCTCTAGCCCTGCTTAAGATGCTGAAGCACGGCCGTGCAGGTGTGCCGATGGAGGTTATGGGGCTAATGCTGGGCGAGTTTGTGGACGACTACACTGTGCGTGTGATTGATGTGTTTGCCATGCCTCAGTCAGGCACGGGTGTGAGTGTGGAAGCTGTGGATCCTGTTTTTCAAGCAAAGATGTTGGACATGTTGAAGCAGACCGGAAGgccAGAGATGGTGGTAGGCTGGTACCACAGTCACCCCGGTTTTGGCTGCTGGCTCTCTGGTGTAGACATTAACACACAGCAGAGCTTTGAGGCGTTGTCTGAAAGGGCTGTGGCAGTGGTGGTGGACCCCATTCAGAGCGTCAAGGGAAAGgtGGTGATTGATGCCTTCCGACTGATCAATGCAAACATGATGGTCTTGGGACATGAACCACGGCAGACAACCTCGAACCTGGGACACCTCAACAAGCCCTCGATTCAGgcTTTAATTCATGGATTGAACAGACATTACTACTCCATTACCATCAACTACAGGAAGAATGAGCTCGAACAAAAGATGCTGTTGAACCTACATAAGAAGAGCTGGATGGAGGGTCTGACACTGCAGGACTACAGCGAACACTGCAAGCTCAACGAGACCATTGTAAAAGAGATGCTCGAGCTGGCTAAGAATTACAATAAGgCTGTCGAAGAGGAAGACAAAATGACTCCAGAGCAGCTGGCCATCAAGAATGTTGGCAAACAGgATCCCAAACGGCATTTGGAAGAACACGTGGATGTACTGATGACGTCCAATATCGTGCAGTGCCTCGCTGCCATGTTAGATACCGTCGTCTTCCAGTAAACTTTGATTGTGCATAAACGTTAATATTCATTGTCTGTTGTgtctttttaagaaataaaccTATACAAAATCCA

Function

symbol description
psmd14 Predicted to enable metallopeptidase activity; proteasome binding activity; and thiol-dependent deubiquitinase. Acts upstream of or within response to yeast. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD14 (proteasome 26S subunit, non-ATPase 14).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 14

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0001878 response to yeast biological_process
GO:0000502 proteasome complex cellular_component
GO:0003984 acetolactate synthase activity molecular_function

KEGG:

id description
K03030 PSMD14, RPN11, POH1; 26S proteasome regulatory subunit N11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308416.1 True 1112 mRNA 0.49 11 21532681 21552267

Neighbor

gene id symbol gene type direction distance location
lgsn lgsn coding upstream 142475 21383873 ~ 21390206 (+)
col9a1a LOC108438673,LOC108270765,LOC107753862,LOC107680514,LOC107597184 coding upstream 159310 21359474 ~ 21373371 (+)
mrpl4 mrpl4,LOC107680457,LOC107753863,LOC107597183,LOC107680460 coding upstream 181350 21346217 ~ 21351331 (+)
c11h6orf120 c10h6orf120,LOC103038725,LOC105905813 coding upstream 188267 21339943 ~ 21344414 (+)
krt94 LOC108270801,LOC108438672,LOC103031381,LOC102787562,LOC102307626 coding upstream 208412 21321091 ~ 21324269 (+)
tbr1a LOC108270775 coding downstream 2434 21554701 ~ 21559002 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding downstream 8788 21561055 ~ 21605914 (+)
si:ch211-227n13.3 LOC108270813 coding downstream 59509 21611776 ~ 21615292 (+)
nxph2b LOC108270824 coding downstream 63922 21616189 ~ 21622277 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding downstream 204323 21756590 ~ 21770086 (+)
G185546 NA non-coding upstream 44154 21488324 ~ 21488527 (+)
G185533 NA non-coding upstream 65743 21466332 ~ 21466938 (+)
G185519 NA non-coding upstream 86201 21444384 ~ 21446480 (+)
G185503 NA non-coding upstream 122889 21407479 ~ 21409792 (+)
G185502 NA non-coding upstream 128629 21395362 ~ 21404052 (+)
G185751 NA non-coding downstream 7900 21560167 ~ 21560379 (+)
G185940 NA non-coding downstream 468581 22020848 ~ 22021059 (+)
G185997 NA non-coding downstream 829131 22381398 ~ 22381611 (+)
G186046 NA non-coding downstream 876591 22428858 ~ 22429104 (+)
G186060 NA non-coding downstream 1003182 22555449 ~ 22899731 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 267626 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 322142 21189248 ~ 21210539 (+)
G184979 NA other upstream 1381787 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 1661218 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 1687443 19836145 ~ 19845238 (+)
trnap-agg_1 NA other downstream 406621 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 760175 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2655609 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 3011133 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 3979478 25531745 ~ 25696872 (+)

Expression


Co-expression Network