ddx59 (ddx59,LOC107717990,LOC107593348)


Basic Information

Item Value
gene id ddx59
gene name ddx59,LOC107717990,LOC107593348
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23378681 ~ 23387676 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308429.1
GTCGTCATATTTGTGCGACCGCATCAGCGTAAACAAGCCGCACAGCAGGCTGTCTAGTTTCTTAACCCTTTTCTGGTTAAAGCAAGTGCGTTTTACGTCTTTTTGTCGTAGGAGTCaactataaattgataatattgataatattgataatatttATAGATGTATTAGTCTTGTGTGGGGCTGTTTTGCGTTGTATGAGCCTGAAAGGAAGATGTTTATGCCTCGATCATTAAAGGTTAAGAGAGCGTCTGAGAGTCAGAAAAGCCCTGAggtgaaaaaaagcaaaggaaacTTGGATGCCAGTGTAACTGATTCAGAGTCGCACAGTGGCGAGTTaatcaggaatgaaacagaggAGCAGGAAGAGaagcaggaagaggaggaacCTGTGAAGTCATTCAAGAAAAGCCAGAGATGGCCAAACCCAGgagaacctgtgtgtgtgatgtgtggcCGTTATGGGGAGTACATCTGCGACAACACTGACAATGATGTGTGCAGTCTGGAGTGCAAGGCGAGCCACCTGGCCAGCATGTGCATGGGACTCAGAGAAAAGGTCTTCTCCAAAATGAAGCCAGACACTACAGGCATCCCTCCATCATCAACACATACTGAGCACACTTCCACTAGTGCCGAGCTCGGCTACTCCTACAGAGAGGACGCCTTCATAACAGAGCTGAGCGAGGACCAGGTTGAAAGGGTGAAGAAAGAGCTCTCAGTAGTTACAGAAGGTCAGAATGTCACCAGGCCCATCATTGAATTTGAACACTGCCACTTTCCTGAAGCACTCAGAATGAACCTGAAGAAGGCTGGCTATGAGGCTCCAACTCCGATCCAAATGCAGATGGTTCCTGTAGGTTTGGCTGGGAGAGATGTGATTGCCACAGCTGACACAGGATCTGGAAAAACCATTGCTTTCCTGCTTCCAGTGGTGGTTCATTGCTTGGAGAAGGAAGCAGGTTCTTCACCCGGCCCTGTGAGTGTGATTCTGACTCCAACCCGGGAGCTGGCTATTCAAATCGAGAGACAGGTGAAGGAGTTGATTATGGGCCTGCCCAACATGAGGACTGCACTGTTGGTCGGAGGGATGCCCCTACCCCCTCAGCTACATCGGCTCAAACAGAAAATCAAGATTGTGATTGCCAGTCCAGGCCGTCTGATAGAGATTCTGAAGCAGAAGGCTGTCCAGCTCGACGGCGTAAAAGTTGTAGTTGTTGATGAGGCTGACACCATGCTGAAGATGGGATTCCAGCAACAAGTGCTCGAGATTTTGGAGCACGTTCCCGATGACCATCAGACTTTGCTAACGTCTGCGACGATACCTGCAGGAACGGAGCTGCTAACAGCTCGTCTGACCAGCGATCCCGTACGCATTACAGTTGGCCAGAAGAATCAACCGTGTGCTAATGTCCGCCAGATCGTTCTCTGGGTAGAGGAGCCATCAAAGAAAAAGAAGCTCTTTGAGATTCTGAATGACGGGAAGCTCTACCAGCCACCTGTGGTGGTGTTTGTGGACTGTAAACTTGGAGCTGACCTTTTATGTGAAGCTGTACACAAAGTTATGGGTTTAAATACAGTAGCTATTCACTCTGACAAGACACAGTGGGAACGCAACAGAATCCTCAAGgGTCTGCTTGAGGGCCAGTTTGAAGTGGTGGTTAGTACGGGCGTATTGGGTAGAGGACTGGACCTGGTCAATGTCAAGCTGGTGGTGAATTTCGACATGCCAACTAACATGGATGAGTATGTTCATCAGATTGGTAGAGCAGGAAGACTCGGGCACAGAGGGACGGCGATCACCTTCATGAATAACAACAATAAGCGCTTGTTTCTGGACATAGTGGAGAGAGTAAAGCCGACTGGATCCCAGCTTCCCCCACAACTCCTCAACTCCCCACATCTACTCGACCAGCAAAGGAGAGCCAGGAAAAGTACTAAACAAGGAGGGGATGATGTTGTGACCAAGAGCAATATTATTGACATTATTAAAAGACATGACAGGAACCGTTTTAAGaaatgatttgatttgaaaCCTTGATTTTTGATACAAGTACACATATtcaatgttaatttaatttttaataaataacatgttgCATTA

Function

symbol description
ddx59 Predicted to enable RNA binding activity and RNA helicase activity. Human ortholog(s) of this gene implicated in orofaciodigital syndrome V. Orthologous to human DDX59 (DEAD-box helicase 59).

NR:

description
probable ATP-dependent RNA helicase DDX59 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K19466 DDX59; ATP-dependent RNA helicase DDX59

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308429.1 True 2101 mRNA 0.47 8 23378681 23387676

Neighbor

gene id symbol gene type direction distance location
LOC117598438 NA coding upstream 207770 23169883 ~ 23170911 (+)
fam43a fam43a,LOC106573864 coding upstream 243529 23132967 ~ 23135152 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding upstream 1608595 21756590 ~ 21770086 (+)
nxph2b LOC108270824 coding upstream 1756404 21616189 ~ 21622277 (+)
si:ch211-227n13.3 LOC108270813 coding upstream 1763389 21611776 ~ 21615292 (+)
kif14 kif14 coding downstream 1394 23389070 ~ 23410114 (+)
LOC113526144 LOC108270555 coding downstream 25353 23413029 ~ 23473569 (+)
dennd1b dennd1b coding downstream 448027 23835703 ~ 23926144 (+)
trnaq-uug_2 NA coding downstream 545190 23932866 ~ 23932937 (+)
trnaq-cug_11 NA coding downstream 546456 23934132 ~ 23934203 (+)
G186538 NA non-coding upstream 26445 23335346 ~ 23352236 (+)
G186435 NA non-coding upstream 258904 23118760 ~ 23119777 (+)
G186331 NA non-coding upstream 372652 23003569 ~ 23006029 (+)
G186304 col6a2 non-coding upstream 420295 22956296 ~ 22958386 (+)
G186325 NA non-coding upstream 424580 22953893 ~ 22954101 (+)
G186643 NA non-coding downstream 17828 23405504 ~ 23419593 (+)
G186699 NA non-coding downstream 88439 23476115 ~ 23476497 (+)
G186798 NA non-coding downstream 281342 23669018 ~ 23676568 (+)
G186814 NA non-coding downstream 324357 23712033 ~ 23714371 (+)
G186864 NA non-coding downstream 404244 23791920 ~ 23792127 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 997661 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 1419722 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 2113626 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 2168142 21189248 ~ 21210539 (+)
G184979 NA other upstream 3227787 20149971 ~ 20150894 (+)
glrx2 glrx2 other downstream 820200 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 1175724 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 2144069 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 2798186 26185862 ~ 26212115 (+)
G188164 NA other downstream 2819266 26206942 ~ 26210010 (+)

Expression


Co-expression Network