rnf13 (rnf13)


Basic Information

Item Value
gene id rnf13
gene name rnf13
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10544767 ~ 10555198 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308453.1
CTTAAATCTATGCGCGTACGTCAAGTCTATACATGTATGCCATTGGTGTAAAATGCGGACGTTTTAGAAGTCACAAATTTACAAACTATAGTTTATGAAATCTACGTTGGTTTGTTATATATAGATCGTTGCTTGTACAACGAGCTTCGGTATAGCGCGCCGTGTGACCCGGATGCAGTTCTAGCGAGCAGGTTAGCCTAACCTAGCATAACAGAGTTAGCTTAGCATAGTGAGTGTTAAAAGCGGCTGTTTGTTGACATTGTGTTTGTGCTGCATCTGAGGCGGGCAGGTCGGACACATGGACATAATAAAGACATAAAGTGGCCACTTGCGGTGTTTTTATTGTAACACGATAATAAAACGCTTCGATGTAGCTGAAGagagagagacaggtgtgaAGATGCTGCTGCCTGTAGCGATGCTGATGGTCTCACTCACTCAGatcttcatcatcaccttcatcagcCTGCTGCCTGTGGAGGCCGACATCGCAgcaTACTCGGGTGATAATCAGACAGAGAGGTTTGATGATGCTCCTGCTCGGTTTGGATACAGATTGCCCAGCCAGGGCCTGAAGGGTTTCCTGATTGGTGCACGGCCTGAGAATGGGTGTGTACCAATTGATCCTCCACCAATCAAAGAGAACTCCAGCAGCGGCTTCATCGTCCTCATCAAGCGATACCACTGCAATTTCGACATCAAGgtgcTGAATGCTCAGAGAGCAGGTTACATTGCCGCCATTGTTCACAATGTAGACTCGGAGGAGCTCGTCAACATGGGATCTGATGACTTGGAGGTGGTGAAGCAGATCAACATCCCATCTGTCTTTGTTGGAGAAAAGGCTTCGAAGTCTTTAATGGAGGAGTACAGTTATGAGAgaggAGGTTATATAATCCTGATGCCTGATTTCAGTCTGCCGTTGGAATATTACCTGATCCCGTTCCTCATCATTGTGGGAATCTGTCTTATTCTTATTGTGGTCTTTATGATCACAAAGTTTGTTCAGGACCGACACCGAGCCCGACGGAGCCGACTGCGCAAGGACCAACTGAAGAAACTTCCTGTccacaaatacaaaaaaggtGATGTCTATGATGTGTGTGCAATCTGTCTGGATGAGTATGAGGAGGGGGAGAAGCTGCGCGTGCTGCCCTGTTCACacgcataTCACTGTAAGTGTGTGGACCCATGGCTAACGAAGACGAAGAGGACGTGCCCGGTGTGTAAGCAGAAGGTGGTTCCGGCCGGTTCGGAATCGGACTCGGACTCGGACAGTGGGGGAGACGAGAGCGATGAGGTTTCTGAAAGCACGCCGTTGCTGCGTCCACACCCCCCCGCCCGAATCCGCACCCCGTCTCTCACCAGCACACACTCCGCCTCCACCGGCCCCCCTGACTGCTCCGACACTGACTCCACTGAGGAAGAGGGGAGGGGGTGGAGGTGGTCACCGTGGAAACAGTTGTGGTGTTGCAGCAGGAACAACCTGATGATGACCTCATCAATGCCTAAAGACAAGCCAGTCAGACTGCTAATTAATCAGAAGTGACAGTATAGCTCatctacaccacacacacacactttgcacgGTTTATGATTTTATCACAAAGGCTAGATCAATGGTGGTTCGAATGTCATCTCTgcgacagaaacacacacagctttacattTATCCAAAATATGGATGTAACAGACTTTATCACTACCTAATAATTATGCCTACATAGGGACCCTCCTcccaaatgaaaacttttctgAAGCGCTGACGATGATGAATATTACTATGTATTGTTTAGCTGAGTTTTGGCACACACGTGTCTTCTGTAGCACCTTATTATTAACCTCATTTTCCTTTATAGgagttttaatatatatatatatatttctttttttgccaAAACTGTACCCAGTGTTGCTTTTCTGTGTAAAATGAAGCCAAACGTTTTGATTGTgccacatttaaaatgatttgtgttttaatttgtttcggaaaatgaaattgaaatccTGAATAATGCATGATCAGcgctcacacactcagcagTGTTCAGTTCGTCAGTGTGTATTTTAGTGTTCTGTCTTTGTAAATGTTACACACTCGCTGCCTTTCCCAGCTCCACTTGTCcactttattttttccattcagctgaatttaataaatcatttctgtTGAAGAAGTTGtaccatcacacacacgca
>XM_034308454.1
CTTAAATCTATGCGCGTACGTCAAGTCTATACATGTATGCCATTGGTGTAAAATGCGGACGTTTTAGAAGTCACAAATTTACAAACTATAGTTTATGAAATCTACGTTGGTTTGTTATATATAGATCGTTGCTTGTACAACGAGCTTCGGTATAGCGCGCCGTGTGACCCGGATGCAGTTCTAGCGAGCAGGTTAGCCTAACCTAGCATAACAGAGTTAGCTTAGCATAGTGAGTGTTAAAAGCGGCTGTTTGTTGACATTGTGTTTGTGCTGCATCTGAGGCGGGCAGGTCGGACACATGGACATAATAAAGACATAAAGTGGCCACTTGCGGTGTTTTTATTGTAACACGATAATAAAACGCTTCGATGTAGCTGAAGtgagagagagagacaggtgtgaAGATGCTGCTGCCTGTAGCGATGCTGATGGTCTCACTCACTCAGatcttcatcatcaccttcatcagcCTGCTGCCTGTGGAGGCCGACATCGCAgcaTACTCGGGTGATAATCAGACAGAGAGGTTTGATGATGCTCCTGCTCGGTTTGGATACAGATTGCCCAGCCAGGGCCTGAAGGGTTTCCTGATTGGTGCACGGCCTGAGAATGGGTGTGTACCAATTGATCCTCCACCAATCAAAGAGAACTCCAGCAGCGGCTTCATCGTCCTCATCAAGCGATACCACTGCAATTTCGACATCAAGgtgcTGAATGCTCAGAGAGCAGGTTACATTGCCGCCATTGTTCACAATGTAGACTCGGAGGAGCTCGTCAACATGGGATCTGATGACTTGGAGGTGGTGAAGCAGATCAACATCCCATCTGTCTTTGTTGGAGAAAAGGCTTCGAAGTCTTTAATGGAGGAGTACAGTTATGAGAgaggAGGTTATATAATCCTGATGCCTGATTTCAGTCTGCCGTTGGAATATTACCTGATCCCGTTCCTCATCATTGTGGGAATCTGTCTTATTCTTATTGTGGTCTTTATGATCACAAAGTTTGTTCAGGACCGACACCGAGCCCGACGGAGCCGACTGCGCAAGGACCAACTGAAGAAACTTCCTGTccacaaatacaaaaaaggtGATGTCTATGATGTGTGTGCAATCTGTCTGGATGAGTATGAGGAGGGGGAGAAGCTGCGCGTGCTGCCCTGTTCACacgcataTCACTGTAAGTGTGTGGACCCATGGCTAACGAAGACGAAGAGGACGTGCCCGGTGTGTAAGCAGAAGGTGGTTCCGGCCGGTTCGGAATCGGACTCGGACTCGGACAGTGGGGGAGACGAGAGCGATGAGGTTTCTGAAAGCACGCCGTTGCTGCGTCCACACCCCCCCGCCCGAATCCGCACCCCGTCTCTCACCAGCACACACTCCGCCTCCACCGGCCCCCCTGACTGCTCCGACACTGACTCCACTGAGGAAGAGGGGAGGGGGTGGAGGTGGTCACCGTGGAAACAGTTGTGGTGTTGCAGCAGGAACAACCTGATGATGACCTCATCAATGCCTAAAGACAAGCCAGTCAGACTGCTAATTAATCAGAAGTGACAGTATAGCTCatctacaccacacacacacactttgcacgGTTTATGATTTTATCACAAAGGCTAGATCAATGGTGGTTCGAATGTCATCTCTgcgacagaaacacacacagctttacattTATCCAAAATATGGATGTAACAGACTTTATCACTACCTAATAATTATGCCTACATAGGGACCCTCCTcccaaatgaaaacttttctgAAGCGCTGACGATGATGAATATTACTATGTATTGTTTAGCTGAGTTTTGGCACACACGTGTCTTCTGTAGCACCTTATTATTAACCTCATTTTCCTTTATAGgagttttaatatatatatatatatttctttttttgccaAAACTGTACCCAGTGTTGCTTTTCTGTGTAAAATGAAGCCAAACGTTTTGATTGTgccacatttaaaatgatttgtgttttaatttgtttcggaaaatgaaattgaaatccTGAATAATGCATGATCAGcgctcacacactcagcagTGTTCAGTTCGTCAGTGTGTATTTTAGTGTTCTGTCTTTGTAAATGTTACACACTCGCTGCCTTTCCCAGCTCCACTTGTCcactttattttttccattcagctgaatttaataaatcatttctgtTGAAGAAGTTGtaccatcacacacacgca
>XM_034308455.1
CTTAAATCTATGCGCGTACGTCAAGTCTATACATGTATGCCATTGGTGTAAAATGCGGACGTTTTAGAAGTCACAAATTTACAAACTATAGTTTATGAAATCTACGTTGGTTTGTTATATATAGATCGTTGCTTGTACAACGAGCTTCGGTATAGCGCGCCGTGTGACCCGGATGCAGTTCTAGCGAGCAGGTTAGCCTAACCTAGCATAACAGAGTTAGCTTAGCATAGTGAGTGTTAAAAGCGGCTGTTTGTTGACATTGTGTTTGTGCTGCATCTGAGGCGGGCAGGTCGGACACATGGACATAATAAAGACATAAAGTGGCCACTTGCGGTGTTTTTATTGTAACACGATAATAAAACGCTTCGATGTAGCTGAAGgtgtgtgtgtgtgagagagagagacaggtgtgaAGATGCTGCTGCCTGTAGCGATGCTGATGGTCTCACTCACTCAGatcttcatcatcaccttcatcagcCTGCTGCCTGTGGAGGCCGACATCGCAgcaTACTCGGGTGATAATCAGACAGAGAGGTTTGATGATGCTCCTGCTCGGTTTGGATACAGATTGCCCAGCCAGGGCCTGAAGGGTTTCCTGATTGGTGCACGGCCTGAGAATGGGTGTGTACCAATTGATCCTCCACCAATCAAAGAGAACTCCAGCAGCGGCTTCATCGTCCTCATCAAGCGATACCACTGCAATTTCGACATCAAGgtgcTGAATGCTCAGAGAGCAGGTTACATTGCCGCCATTGTTCACAATGTAGACTCGGAGGAGCTCGTCAACATGGGATCTGATGACTTGGAGGTGGTGAAGCAGATCAACATCCCATCTGTCTTTGTTGGAGAAAAGGCTTCGAAGTCTTTAATGGAGGAGTACAGTTATGAGAgaggAGGTTATATAATCCTGATGCCTGATTTCAGTCTGCCGTTGGAATATTACCTGATCCCGTTCCTCATCATTGTGGGAATCTGTCTTATTCTTATTGTGGTCTTTATGATCACAAAGTTTGTTCAGGACCGACACCGAGCCCGACGGAGCCGACTGCGCAAGGACCAACTGAAGAAACTTCCTGTccacaaatacaaaaaaggtGATGTCTATGATGTGTGTGCAATCTGTCTGGATGAGTATGAGGAGGGGGAGAAGCTGCGCGTGCTGCCCTGTTCACacgcataTCACTGTAAGTGTGTGGACCCATGGCTAACGAAGACGAAGAGGACGTGCCCGGTGTGTAAGCAGAAGGTGGTTCCGGCCGGTTCGGAATCGGACTCGGACTCGGACAGTGGGGGAGACGAGAGCGATGAGGTTTCTGAAAGCACGCCGTTGCTGCGTCCACACCCCCCCGCCCGAATCCGCACCCCGTCTCTCACCAGCACACACTCCGCCTCCACCGGCCCCCCTGACTGCTCCGACACTGACTCCACTGAGGAAGAGGGGAGGGGGTGGAGGTGGTCACCGTGGAAACAGTTGTGGTGTTGCAGCAGGAACAACCTGATGATGACCTCATCAATGCCTAAAGACAAGCCAGTCAGACTGCTAATTAATCAGAAGTGACAGTATAGCTCatctacaccacacacacacactttgcacgGTTTATGATTTTATCACAAAGGCTAGATCAATGGTGGTTCGAATGTCATCTCTgcgacagaaacacacacagctttacattTATCCAAAATATGGATGTAACAGACTTTATCACTACCTAATAATTATGCCTACATAGGGACCCTCCTcccaaatgaaaacttttctgAAGCGCTGACGATGATGAATATTACTATGTATTGTTTAGCTGAGTTTTGGCACACACGTGTCTTCTGTAGCACCTTATTATTAACCTCATTTTCCTTTATAGgagttttaatatatatatatatatttctttttttgccaAAACTGTACCCAGTGTTGCTTTTCTGTGTAAAATGAAGCCAAACGTTTTGATTGTgccacatttaaaatgatttgtgttttaatttgtttcggaaaatgaaattgaaatccTGAATAATGCATGATCAGcgctcacacactcagcagTGTTCAGTTCGTCAGTGTGTATTTTAGTGTTCTGTCTTTGTAAATGTTACACACTCGCTGCCTTTCCCAGCTCCACTTGTCcactttattttttccattcagctgaatttaataaatcatttctgtTGAAGAAGTTGtaccatcacacacacgca
>XM_034308456.1
CTTAAATCTATGCGCGTACGTCAAGTCTATACATGTATGCCATTGGTGTAAAATGCGGACGTTTTAGAAGTCACAAATTTACAAACTATAGTTTATGAAATCTACGTTGGTTTGTTATATATAGATCGTTGCTTGTACAACGAGCTTCGGTATAGCGCGCCGTGTGACCCGGATGCAGTTCTAGCGAGCAGGTTAGCCTAACCTAGCATAACAGAGTTAGCTTAGCATAGTGAGTGTTAAAAGCGGCTGTTTGTTGACATTGTGTTTGTGCTGCATCTGAGGCGGGCAGGTCGGACACATGGACATAATAAAGACATAAAGTGGCCACTTGCGGTGTTTTTATTGTAACACGATAATAAAACGCTTCGATGTAGCTGAAGagagacaggtgtgaAGATGCTGCTGCCTGTAGCGATGCTGATGGTCTCACTCACTCAGatcttcatcatcaccttcatcagcCTGCTGCCTGTGGAGGCCGACATCGCAgcaTACTCGGGTGATAATCAGACAGAGAGGTTTGATGATGCTCCTGCTCGGTTTGGATACAGATTGCCCAGCCAGGGCCTGAAGGGTTTCCTGATTGGTGCACGGCCTGAGAATGGGTGTGTACCAATTGATCCTCCACCAATCAAAGAGAACTCCAGCAGCGGCTTCATCGTCCTCATCAAGCGATACCACTGCAATTTCGACATCAAGgtgcTGAATGCTCAGAGAGCAGGTTACATTGCCGCCATTGTTCACAATGTAGACTCGGAGGAGCTCGTCAACATGGGATCTGATGACTTGGAGGTGGTGAAGCAGATCAACATCCCATCTGTCTTTGTTGGAGAAAAGGCTTCGAAGTCTTTAATGGAGGAGTACAGTTATGAGAgaggAGGTTATATAATCCTGATGCCTGATTTCAGTCTGCCGTTGGAATATTACCTGATCCCGTTCCTCATCATTGTGGGAATCTGTCTTATTCTTATTGTGGTCTTTATGATCACAAAGTTTGTTCAGGACCGACACCGAGCCCGACGGAGCCGACTGCGCAAGGACCAACTGAAGAAACTTCCTGTccacaaatacaaaaaaggtGATGTCTATGATGTGTGTGCAATCTGTCTGGATGAGTATGAGGAGGGGGAGAAGCTGCGCGTGCTGCCCTGTTCACacgcataTCACTGTAAGTGTGTGGACCCATGGCTAACGAAGACGAAGAGGACGTGCCCGGTGTGTAAGCAGAAGGTGGTTCCGGCCGGTTCGGAATCGGACTCGGACTCGGACAGTGGGGGAGACGAGAGCGATGAGGTTTCTGAAAGCACGCCGTTGCTGCGTCCACACCCCCCCGCCCGAATCCGCACCCCGTCTCTCACCAGCACACACTCCGCCTCCACCGGCCCCCCTGACTGCTCCGACACTGACTCCACTGAGGAAGAGGGGAGGGGGTGGAGGTGGTCACCGTGGAAACAGTTGTGGTGTTGCAGCAGGAACAACCTGATGATGACCTCATCAATGCCTAAAGACAAGCCAGTCAGACTGCTAATTAATCAGAAGTGACAGTATAGCTCatctacaccacacacacacactttgcacgGTTTATGATTTTATCACAAAGGCTAGATCAATGGTGGTTCGAATGTCATCTCTgcgacagaaacacacacagctttacattTATCCAAAATATGGATGTAACAGACTTTATCACTACCTAATAATTATGCCTACATAGGGACCCTCCTcccaaatgaaaacttttctgAAGCGCTGACGATGATGAATATTACTATGTATTGTTTAGCTGAGTTTTGGCACACACGTGTCTTCTGTAGCACCTTATTATTAACCTCATTTTCCTTTATAGgagttttaatatatatatatatatttctttttttgccaAAACTGTACCCAGTGTTGCTTTTCTGTGTAAAATGAAGCCAAACGTTTTGATTGTgccacatttaaaatgatttgtgttttaatttgtttcggaaaatgaaattgaaatccTGAATAATGCATGATCAGcgctcacacactcagcagTGTTCAGTTCGTCAGTGTGTATTTTAGTGTTCTGTCTTTGTAAATGTTACACACTCGCTGCCTTTCCCAGCTCCACTTGTCcactttattttttccattcagctgaatttaataaatcatttctgtTGAAGAAGTTGtaccatcacacacacgca

Function

symbol description
rnf13 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 73. Orthologous to human RNF13 (ring finger protein 13).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF13

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15692 RNF13, RZF; E3 ubiquitin-protein ligase RNF13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308453.1 False 2196 mRNA 0.46 10 10544767 10555198
XM_034308454.1 False 2200 mRNA 0.46 10 10544767 10555198
XM_034308455.1 True 2211 mRNA 0.46 10 10544767 10555198
XM_034308456.1 False 2192 mRNA 0.46 10 10544767 10555198

Neighbor

gene id symbol gene type direction distance location
LOC113536710 NA coding downstream 14396 10527033 ~ 10530371 (-)
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding downstream 91996 10258307 ~ 10452771 (-)
efl1 efl1,eftud1 coding downstream 293427 10114083 ~ 10251340 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding downstream 471457 10068517 ~ 10073310 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding downstream 679982 9837999 ~ 9864785 (-)
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding upstream 25495 10580693 ~ 10592964 (-)
LOC113536600 NA coding upstream 39474 10594672 ~ 10597238 (-)
nmur1a LOC108270657 coding upstream 68091 10623289 ~ 10635357 (-)
hykk.2 hykk coding upstream 83823 10639021 ~ 10644194 (-)
mfsd8l1 LOC108271204 coding upstream 540929 11096127 ~ 11108565 (-)
G179469 NA non-coding downstream 29566 10514696 ~ 10515201 (-)
G179466 NA non-coding downstream 32743 10511621 ~ 10512024 (-)
G179372 NA non-coding downstream 432525 10112028 ~ 10112242 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding downstream 770358 9770818 ~ 9774409 (-)
G179004 NA non-coding downstream 790388 9739531 ~ 9754379 (-)
G179478 NA non-coding upstream 6205 10561403 ~ 10563452 (-)
G179485 NA non-coding upstream 19338 10574536 ~ 10576032 (-)
G179487 NA non-coding upstream 23222 10578420 ~ 10579460 (-)
G179727 NA non-coding upstream 639239 11194437 ~ 11195673 (-)
G179827 ttc14 non-coding upstream 1003721 11558919 ~ 11562343 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 21188 10486735 ~ 10523579 (-)
G179035 NA other downstream 729542 9813892 ~ 9815225 (-)
G178942 NA other downstream 1021437 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 1137549 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 1208581 9320966 ~ 9336186 (-)
LOC113536673 NA other upstream 50313 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 688649 11243847 ~ 11246310 (-)
G179803 ncl other upstream 853894 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 936509 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 955648 11510846 ~ 11518394 (-)

Expression


Co-expression Network