si:ch73-40i7.2 (LOC108271407)


Basic Information

Item Value
gene id si:ch73-40i7.2
gene name LOC108271407
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19509033 ~ 19524997 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308463.1
CTGTGGTATTTTAAGACTACTGTATGTTTGCAGTGAGAGCAATATTTAACTTGGGTAatatgttacacacacacacacgaggaaATTGGTGTGTAGTGTGCCTAGCTGACGTATTTCAGCTTATTCAGGTGAAGTAAACCGCAGATCTGCATGCGAGCTCAGAGGGCTGTATTTTCCACACCGGCTTTATTTCAgggtttatttctattttcacTGATATACTGATGTCGGGTTTTCTCACTGTTGCCTGTCATTCTCTTGACAAAGCAGTAGTGCTTGGTTAGGCTTGTCTCTCTGCTAGTTTATCTTCACCTCGGGTTGATACAAGAAAAGTCATGGAGCCTGTACGGAAATAAAAGTCCACTCTAACCTACATGGGGGACAATGTAGATGTCAAGGCCCTGAGGGCCAGGTTTCATTCCCAGGCAGAAAGGGCCACCTCCAGTGGTGGAGCTTACTCCAGGCCTCATGTGGCTGCTCATTTGCCGGAGACATCGGACAATGGAGTGGTCCGAAGCAAGCCTTCACCTGCAGCTCCAAAGCCAGTGTTTCCAGTGAACCCCAGCACTGAACCCAAGAAGTTTAGTCAGACTCCTCAGGGACTGTTTCCCAAACCTCCACCCTCTCACCGTGTGGGAGCTAAAGAGGATCCTAAACCGCCTGTCAATGACTCTGAGAACACAAAGAGAGTAAAACTGACAGGGGAGCTTCTCCAAAACAAGATGCTGCAACATCTTGAGAAGAAGCCCCAATCACTTCCCAGATCAGCACTGCCAAGCCAGAAGAGCATCACAGAGGTAGCTCCCCTGAGAAAACCACTTCCCAATGTTGGACAACGACCTGCAAAGCCCAAAAGACCCCCGGTTGTCAGCCTGGATCGTTTTCGTGTAAAGGGTCCAGCCGTTCAGCGCACAGTCCATCTAGATCCTAAAACACCTGAAGGGCCAGCCACGACCACCAAAAGCAACTTTCCTGTCTGCGCCACAGCCTGTTCCCAGAGAAACACCGAACCTGAACAGGACACATACGATGACATCGATTTGCccccacctccacctccacctccaaaACCATCTTCCAGTGAATCATGGACAAGCAGTTTCTCGTCTCAGGCTGATGAGGAGAGCGATCATAGTGAAATTTATGAGCATATCGAGGATCAGGAGGAGACTGCACAGCCTGTGGTCccagagaagaaaaaacaaaaagaacacaaaCGACAGCAAGTGgaaaagagagagcaaaaagagaggctgaaaaaagaaaatgaataccgaaaaaaattcaaaCTGACTGGAGAAGTCGAGGTGCTCCACACAGCTCGGGTGAGGGAGGACTGGCAAGGCGGGAAGAACGATCTGCGTGTGCGGCAGGGAGAGGCTGTGGAGATTGTGCGTGTGAAGAACAACCCCGAGGGAAGATGGCTGGCCCGAAACATGAGTGGGGAATaTGGATATGTCAGTAACACATGTGTAGATGTGGACTATGAAGAAATAAAGCGAAAGATTCGCAGTGAAGCTGCTCCTCCTCCCCTTCCTCCTCTTGTCCATGAGGACGAGTATGTCTACGATGATGTCGGCGCAGACACACTGAACAGCAGGCTAAGTGTGAGCGGTGAGGTATATGATGATGTTGATCATGTCATACCGGATGACTTCCCCCTGCCCCCTCCGGAGATATGCCAAACCCTGCCAAAAAGCAAGAAGctagaaaaggaggaaaaggagttCAGAAAAAGGTTTAAGTTTGAAGGCCCCATCCAAGTTCTTTGCTCTATGATGGTGGATCCAAATGCCAACATCAAGAAGGGCGGTGGGAAGGACCTCTCTGTTGTGAAGGGACAAATTCTTGAAGTCATCCAGCAGACTAATGAGAAGAAAGTACTCTGTCGGAATGAACACGGCAAATATGGATATGTTCCTAGACATTACCTCCTACATGAGgaaaatgaaatatatgatGACATTGACAACATGACAGATATTTATGATAACGATGTCAGTGGACCAGTACCACTGCGGTCTTGACAGCCATTAACAATGCTATGATGGAGAAGATGGATGGAAAAGACAACCTGATGATACTCGTTCGTGTGTCTCGTGGACATGAGGACAATGGAGGATGGAGGATCAGGAGGATCATTCAAGAAAATGTTGTACAttgaagaaataaatacatgtttttactaatctgtgatattttacattcttacattttatattacgGATACAAATTAGCAATCACCTAATCACCAGTAATCACCTGGTCAGACTTCAGCTATTAATTGCAGAACATATATTCCCATAAACAAATTgcaaattctgttttattagcATGTTCTTATGAAAAACATACCTTTTTCACAAATGATGTTATTAAACAGAAAACTGTCACATAAGACATGGGAAAGAACTGACTGTCTCCATAAGGTCTCTAAGGGCCAAGCATTTTTTGAAGCAACACCATcttgaatataaaaatatactttgTAGAAGAGATAACAGACATTaatgtgttaatatattaatatatatatagaacaaAAGAATTTGACTAAATGTCTTAAGAAATAATTATTCttacaattatatttagcaaTATTTTCGGCCTCACAGATCACAATCAGAAGTTCCTGAAGGTTTTGAATAAAGGTAGTAAAGGTAGTGTGAAAGTACATCAGTAAAAtctaatgcagtatttttgaaaaattgctGGACAAGTGCCTTCTTCCATTAATTGTGAGCCATAGCTACTTCCTGGGTGTCACTAAGACAAGTTTAACTTTTGGACATTTGCAGTTTTTATCCTCAGTAGAAGATAGAGCTCAATCTTAAGCCATTTTTATCCTCAGTAGAAAACAGCCTCAGCATTTcgagtgattctcatcctcaatacAGCATGACATCAGCACTATTTGGGAGTCCATGACTGTCTTGCATGGTGTACTATTGGTATGTGGCCTCCACTAGTTCTGCAGGAAACCGCCCTGGTGGTCGAGACCCATGCTTTGATGAATAATTAGAGGAACATTTATAGAAATGTGAGAGAGAATGCAAGTCAACATGTAAACAATTTAACAAAGCATGGGTGTAAATCCAATACGCTGAGTcattaccacaaaaaaaaaaaacaacaacaaatcactgttTCTTGTAATTGATTATTCCAAATACCTAACAGACTGTAATGTATAAACCCCCACTTATTAGtagaaccatggttacatgcagGCCCCtctaaaagtattggaacagcaaggctaattcttttgttgttgctatacactgaagacatttggagtTGAGATTAAAAGATGACTTTGAGATGATagtttagaatttcagcttttatttcctgatatttacatctggttgtgttaaataacttagaacatggcactttggtagcagaccacccaatttttaggtgaacaaaagtattggaacagatagtcttaaagtaaataactttTAATATTTGGTGGCATATCCCTTgaaactgcatcaagctggtgacctgctgacatcaccaaattgcattcttcttttgtgatatATTTCCAGGcttgctcaattgggttaaggtctggtgattgacttggccagtctaaatcCTTCtacgttttttttccctgatgaagtcctttattgtgctggcagtgtgttttgggtcattgttttgCTGCATGGTGAATTAGATTAtatgtgtttctctgtaaattggcagaatgtttctgtagacctCTGAATTctttctgctgctaccatcatgagttacatcatc

Function

NR:

description
PREDICTED: FYN-binding protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308463.1 True 3783 mRNA 0.42 17 19509033 19524997

Neighbor

gene id symbol gene type direction distance location
slc35e1 slc35e1,LOC107750991,LOC107752163 coding upstream 3932 19498363 ~ 19505101 (+)
LOC113535100 med26 coding upstream 13132 19490432 ~ 19495901 (+)
crtc1b crtc1,LOC107747695 coding upstream 50859 19442164 ~ 19458174 (+)
klhl26 klhl26,LOC107680559,LOC107747058,LOC107597147 coding upstream 69852 19429911 ~ 19439181 (+)
rab3ab rab3a,rab3ab,LOC107680521,LOC107665838,LOC107597148,LOC107553558 coding upstream 92858 19405686 ~ 19416175 (+)
LOC117595669 pex11g coding downstream 2049 19527046 ~ 19531687 (+)
zgc:172302 LOC108271263 coding downstream 30715 19555712 ~ 19584739 (+)
r3hdm4 r3hdm4,LOC107750993,LOC107592851,LOC107661084 coding downstream 62331 19587328 ~ 19597392 (+)
LOC113531697 kiss1r coding downstream 74266 19599263 ~ 19605614 (+)
arid3a arid3a coding downstream 82450 19607447 ~ 19638191 (+)
G184503 NA non-coding upstream 46190 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 47343 19459818 ~ 19461690 (+)
G184340 NA non-coding upstream 427548 19081252 ~ 19081485 (+)
G184309 NA non-coding upstream 496421 19012407 ~ 19012612 (+)
G184167 NA non-coding upstream 614158 18891239 ~ 18894875 (+)
G184614 NA non-coding downstream 23666 19548663 ~ 19602639 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding downstream 136095 19661092 ~ 19664491 (+)
G184718 NA non-coding downstream 178638 19703635 ~ 19704250 (+)
G184823 NA non-coding downstream 283716 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 396474 19921471 ~ 19947483 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 21249 19486328 ~ 19487784 (+)
adgrl4 adgrl4,LOC102783218 other upstream 238772 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 1099976 18166622 ~ 18409057 (+)
G183549 NA other upstream 1712414 17795445 ~ 17796619 (+)
ect2 ect2,LOC107674529,LOC107718889 other upstream 1727219 17754176 ~ 17781814 (+)
LOC113546543 NA other downstream 1880 19526877 ~ 19548212 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other downstream 7084 19532081 ~ 19554969 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 170230 19695227 ~ 19700274 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 302989 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 311148 19836145 ~ 19845238 (+)

Expression


Co-expression Network