sirt3 (sirt3,LOC107663051)


Basic Information

Item Value
gene id sirt3
gene name sirt3,LOC107663051
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5360418 ~ 5366235 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308478.1
AATTTTGAAATACTGAAGGAAATttgatgttgctgttgttattggCCTTTTCTTAGCATTATCTGGGCATTTATTTCGTGCATCACGGTAAAGCGTCGATATGCGTCATTGGAACAACCATAACACTGCTGTCGGATCAAAGTgacattattgtattatattaactAGTCATGACCTCGTTGCTGATTTTACCGAGACGTTGTATTATAAATATCAAAAGTAATGGAGGAATATTCACAGGCAAAGGTCTATCAGGGATACACACTACCCATAGGAAGATTTCAGCCAAGTTTGTCTGTGATCAGAAGCTGGACCTGGAGCGACATGGACACTCAGGTGTTTTGCGATGTTGGAGAAGCATCCAGAGAGGGTTTTTTGGAGGAGGCCATGGAGGCGCCAAACAGAATATGACTTTAGAGGACATTGCAAAAGGAATCAGAGAACGAGAGTACAAAAGGATAGTGGTTATGGCTGGAGCAGGGATTAGTACTCCAAGTGGAATTCCAGATTTCAGATCACCTGGAAGTGGCCTTTATGACAACCTCCAAAAGTACAACCTCCCCTATGCCGAGGCCATATTCGAGATTAACTATTTCCATTACAACCCTAAACCTTTCTTTGCCTTGGCTAAAGAGTTGTATCCTGGTAATTATCGTCCCAATCTGGCCCACTACTTCATCCGGCTGCTTCACGATAAAGGCCAGCTGCTCAGGATGTACACTCAAAACATCGATGGGCTGGAGAGAAtggCAGGAATCCCAGCTAAGAAGTTAGTGGAGGCACACGGGACATTCGCGACAGCCACATGCACAGTTTGTCGTCGAGAATACCAAGGTGAAGACCTGCGTAGCAATATAATGGAAGGAACAGTGCCTCACTGCTCTCAGTGTAAAGGAGTGATTAAGCCTGACATCGTGTTTTTTGGTGAAGAGCTGCCACAGCACTTTTTCCTCTACCTCACCGACTTCCCCATGGCAGACTTACTGATTGTAATGGGGACGTCATTAGAGGTGGAGCCATTTGCCAGCTTATCTGGAGCCGTGCGAAGTTCTGTGTCTCGCCTCCTTATAAATCGTGACCTGGTGGGACCCTTTGCCTGCGGCTCTTCACTGCACAGTGACGTGGTAGAGCTGGGTGATGTAGTGAGTGGCGTGAGGAAACTAGCAAACACTTTGGGCTGGATGCCTGAGCTGGAGACTCTCATGGCTGACGAAGGTCAGAAGGCTtcaaaggagagagaggaatgacTATCCGGATGTGGGAGACCAGCGTCATTTCTCGCATCCTCTCAGTCATTTTGTGGCTGTGATGTCTCGGCTCGACACATGTGGCACTTTAACAACCGGTGAAGTTGAACTGTAATGAACGCAGCACTTGGAGGCTCAGCTCACTGCATTAGTCTCCCTTTGTAGCTTTAATGGTTGTTTTACAACCTCAACGTTAATAGGGAATTGTTAATGGTATGAACTATGAGCTGATTAAATGTGATATTCTTTTCAGgtgatttaacatttttattcctacttattaatattaaaagctTTGAAAGGTGTCA

Function

symbol description
sirt3 Predicted to enable NAD+ binding activity and NAD-dependent histone deacetylase activity. Predicted to be active in nucleus. Is expressed in liver and retina. Orthologous to human SIRT3 (sirtuin 3).

NR:

description
PREDICTED: NAD-dependent protein deacetylase sirtuin-3, mitochondrial

GO: NA

KEGG:

id description
K11413 SIRT3, SIR2L3; NAD+-dependent protein deacetylase sirtuin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308478.1 True 1555 mRNA 0.45 9 5360418 5366235

Neighbor

gene id symbol gene type direction distance location
cdhr5a LOC108270552,LOC108412775 coding downstream 34960 5318352 ~ 5325458 (-)
trnai-uau_2 NA coding downstream 46164 5314162 ~ 5314254 (-)
LOC113536575 adamts7 coding downstream 58067 5229326 ~ 5302351 (-)
trnai-uau_1 NA coding downstream 69824 5290502 ~ 5290594 (-)
chrna7a chrna7,LOC108270560,LOC108434558,LOC107748270,LOC107679711,LOC107686877 coding downstream 140179 5199143 ~ 5220239 (-)
LOC113536772 LOC108270937,LOC108412780,LOC107730181,LOC107561442,LOC562097,LOC107663023,LOC106562562,LOC108250636 coding upstream 41361 5407596 ~ 5418681 (-)
nqo1 nqo1 coding upstream 53761 5419996 ~ 5446722 (-)
LOC113536779 LOC108271307 coding upstream 68432 5434667 ~ 5452341 (-)
dpep1 dpep1,LOC107730179 coding upstream 99438 5465673 ~ 5481287 (-)
hp LOC108270509 coding upstream 139682 5505917 ~ 5509942 (-)
G176336 NA non-coding downstream 247150 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 513277 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 519725 4839988 ~ 4840693 (-)
G176015 NA non-coding downstream 624002 4732382 ~ 4736416 (-)
G175967 NA non-coding downstream 727633 4630348 ~ 4632785 (-)
G176556 NA non-coding upstream 265591 5631826 ~ 5715020 (-)
G176817 NA non-coding upstream 716593 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 805963 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 818100 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 894562 6260797 ~ 6261240 (-)
trip4 trip4 other downstream 163600 5139610 ~ 5196818 (-)
G176307 NA other downstream 279523 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 856089 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1363965 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 1450525 3851847 ~ 3909893 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 330145 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 1490520 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 2114187 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 2214199 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 2309681 7675916 ~ 7764430 (-)

Expression


Co-expression Network