LOC113536768 (LOC108270562)


Basic Information

Item Value
gene id LOC113536768
gene name LOC108270562
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6809823 ~ 6816713 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308534.1
CCCACTGCATGTATCCTATTAAAAACATTCCGCATTTCAAATTCACTGTCATTGCAGAGGGTGAGTAATTATCCAGTGTGGTTGGCTTGGtgcaacattttggggaaacACATTGTGAGGAAAGATGCCCAGGATGAGACAAGTTCGCCAGAGGTTGAATTTCAATGCTGGTGAAGAGGACAGCACCTGCAGAGGAATTGAAGAGGAGCTGAGATTTTTGCCACACCACACAACGTGTAAAGAGTTTCTCAGAAACAGTCCTGAATGTAAAGAATATGAAAGGAACCTAAATGAAGACTTTCTGAGCTCCATAAAATCCCCTGCACTGCTCACAGCTGACCTGAGAGACCCTGAGACGCTGAGAAGCTCATCAGAtatctcacacagacacacgtcTCCACCACGGCAGTGTCTCACCTCCATCAGACGCATCAGAAAATCTTACAATTCTAAAAGAGATCATTCTTtacagaagagagaaagactTCATTCATCCGTCACTCCAAAATCAGAGATAAAAAGACAAgggattaatataaacccattCACTCCAGACTCACTTCTCATCCAAACTGTGAGCGCAAAGAGAAACCACAACAGAATCCATCAGAAAGActcaTGCGAGGACTTTGAAGAGGAATTCATTCCTCCATTAAAGaGAAAGAGTGTTGTAGTGACATCTCCAACATCTCGCTACACATCTGAGTTCTACGAATTGGAGAAAATTGGCTCTGGAGAGTTTGGGGCTGTTTTCAAGTGTGTGAAAAGACTTGATGGGTGCATCTACGCCATCAAGCGCATCAAGAGGCCGTTAGCGGGTTCTGTGGATGAGCAGAACGCTTTACACGAGGTGTTTGCCCATGCCGTGTTGGGACAGCACCCCCATGTGGTGAGGTATTACTCTGCATGGTCGGAGGATGAACACATGCTGATCCAGAATGAGTACTGCGATGGAGGAACGCTCGAGCAGCTCATCACGGAGAACCGGAGAACCCTGAAGCTCCTCTCTGAAGCTCAGCTGAAAGATTTGCTTCTGCAAGTCTCCCGAGGTTTGAAGTACATCCACTCTGCTTCTCTCGCTCATATGGACATCAAGCCAAgtaatatatttatatcaagGAGAGCAGCCATTCGTAACGCAGACGTCGATGGATCAGATGCAGATGTTGTGTACAAAATAGGAGATCTTAGTCATGTGACTCACGTTAGCAGCCCAAGAGTGCAAGAGGGAGACAGCAGATTTTTAGCCAGTGAGGTCCTGCAAGAGGACTACAGGAATCTACCTAAAGCAGATGTTTTTGCGCTGGCGCTGACAGTGCTAACTGCCTGTGGGGCAAAAGCACTCCCAAGGAATGGGGAAACGTGGCTTGCCATACGTGGAGGGAAACTCCCAACTGTAGCTCAAGTGCTGTCAGAAGAATTTCAACAACTACTCAAGCTCATGATTCATCCAGACCCCGTGCACAGACCTTCATCCTCAGCCCTCAGTAAACATGCCATCCTCCAGCCTGCCTCCAAACTAAGTGCCGACAGCCTGCGCGAGCAGCTTCATGCACAGAAGTTCAGAAACGCACTGCTACTGAAAGAGCTGAATGAGATCCAGTCATCCACAGCAGCTGCGGAACCGAGCGTCTCTTACAGGACCAAGATAAACCGCTCACTTAGTTTAACTACGTTCTGATCTGCAAAAAGCAACAGATTGCAACCAGAGACCATGTTGTTTTTGGAAAAGCATACACTTTGACCATACAGTTAGTTATGAATGTGAATATATTTCCTTTATAGTAAGTTATATGTCAGTATACATGAAATTCATGGAAATATATTCATAGTaacaaaaaatgtgatttttattgctacactatatggccaaaagtttgtggagaCCTGACTTTAACACTCATATCAGCTTGTTGAAAAGTtgaaaggtgttcagtggggttgaggtcagggctctctgCAGGACACTAGAGTCCTTCCGCTTCAACCTTgggaaaccatgtcttcatggagctcgttttagtgcacaggggcattgtcatgctggaacaggttttggcctcttaattccagtggcacaagtttggggaagaaccacatatgggtgtgatggtcaggtgtccacaaacttttggccatatagattATGTGTTCTTAGATATGTGGTTAAAATATAGGTTTAGACTGATTGAACGATATGACAATATCCTCTACAAATGTCATTTGAAATATATTGCTTTTCCATATGGCTAATATTTAGTTTTCAGTATATATTCAGTATTGCTGTGAAGTGAAGTTTAGATTGATGCGATGATAAATATTCTGAAAAACAGCTGGAGACTAAATAAGATATAAATATaggaaatgaaacaaatcatatttttactatattatttattttatgtaatgacacaaaatctttcaaatttcatatatttgaatttgaaaaagaaatagcAAATAAAGTGGCAATAAAtttacaatggaaaaaaaaaaacaaaagatttattattgtccattttcttttaaaaattttttttttttcaatttaattggAAGGCAGTACTACTGTAAGAAGTAGTTTCCTGTGAAGTTTCCTGTGTTatcttaaaaatttaaattgatgTCTGTTTGATTGATGACTGTCATATTGTGACATATTGTGTTTAAGAAGCACTTGAATGAAGTAATTGTTGCACAACCTGCTGCTGAATGTTTCAGagtaatgaatgtttttttattgcagAGCCTGTTGACACACACTCTTTCCGTGTGAAAGGAATTTATCTGTGTATAACTGCCACATATTTTGATTAAAAGTTGCAGCATtgtttcactgtactgtaatttcATATAATAAAAGTAAGCTTGCACACTTga

Function

GO: NA

KEGG:

id description
K03114 SWE1; mitosis inhibitor protein kinase SWE1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308534.1 True 2880 mRNA 0.41 11 6809823 6816713

Neighbor

gene id symbol gene type direction distance location
swap70a LOC108271193 coding downstream 2793 6794539 ~ 6807030 (-)
adma adm coding downstream 158688 6648748 ~ 6651135 (-)
ampd3a ampd3,ampd3a,LOC108433033 coding downstream 166700 6621904 ~ 6643123 (-)
ctr9 ctr9 coding downstream 242066 6555719 ~ 6567757 (-)
galnt18b galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200 coding downstream 347997 6358137 ~ 6461826 (-)
clcn4 clcn4,LOC108443897,LOC103025096,LOC107552404,LOC107705120,LOC107558374 coding upstream 14535 6831248 ~ 6845245 (-)
shroom2b LOC108271435,LOC105905657 coding upstream 44638 6861351 ~ 6886413 (-)
mfn1b mfn1b,LOC108270971,LOC108443893,LOC107701405,LOC107661155 coding upstream 83535 6900248 ~ 6913318 (-)
si:ch73-100l22.3 LOC108271015 coding upstream 124055 6940768 ~ 6954744 (-)
mafgb mafg,mafgb coding upstream 144923 6961636 ~ 6979476 (-)
G177097 NA non-coding downstream 71215 6738321 ~ 6738608 (-)
LOC117598400 NA non-coding downstream 220527 6579004 ~ 6589296 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding downstream 258241 6551325 ~ 6551582 (-)
G176992 eif4g2,LOC108433007 non-coding downstream 258561 6550914 ~ 6551262 (-)
G176990 NA non-coding downstream 264753 6543999 ~ 6545070 (-)
G177374 notum non-coding upstream 241819 7058532 ~ 7059550 (-)
G177404 NA non-coding upstream 320916 7137629 ~ 7138904 (-)
LOC117598441 NA non-coding upstream 339515 7156228 ~ 7157621 (-)
G177448 NA non-coding upstream 450848 7267561 ~ 7271271 (-)
G177455 NA non-coding upstream 473172 7289885 ~ 7290092 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1101519 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1613005 5139610 ~ 5196818 (-)
G176307 NA other downstream 1728928 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2305494 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2813370 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 40042 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 663709 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 763721 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 859203 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1427936 8244649 ~ 8244721 (-)

Expression


Co-expression Network