ctr9 (ctr9)


Basic Information

Item Value
gene id ctr9
gene name ctr9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6555719 ~ 6567757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308556.1
TCGTGACACCGGAAGTAAAAGACTTTGTTGTTCACATGAACACCATCTTCAATCAGTAGCGACGAGAAAATTATCGAGTTAGCCAAACTGCTAATCTGACGGAAAACCGAGGATTTAAACCGTCGCCATGTCTCGGGGATCCATTGAAATCCCCCTGCGGGACACAGACGAGGTGATTGAGCTGGACTTTGATCAGCTTCCTGAAGGAGATGAAGTGATCAGTATCCTGAAGCAGGagcacacacagctgcacaTATGGATCGCACTCGCTCTGGAGTACTACAAACAGGGGAAGACGGAGGACTTTGTGAAGCTGCTGGAGGCGGCGCGTATCGACGGAAACCTCGACTACAGAGACCACGAGAAGGACCAGATGACATGTCTGGACACTCTCGCTGCTTATTACGTCCAGCAGGCTCGCAAAGAGAAGAACAAGGATGCAAAAAAGGACCTTATCAATCAGTCGACGCTGCTGTACACGATGGCGGATAAGATCATCATGTACGATCAGAACCACTTGTTGGGACGAGCCTGTTTTTGCCTGCTGGAAGGGGACAAGATGGATCAGGCAGACGCCCAGTTTCACTTCGTCCTGAACCAGTCCACTAACAACATCCCTGCGCTGCTGGGCAAGGCTTGCATTTCCTTCAACAAAAAGGACTACAGAGGATCTTTGGCTTACTATAAAAAAGCTCTGCGCACAAACCCCGGGTGTCCAGctgaaGTGAGGCTTGGGATGGGTCACTGCTTTGTGAAGCTGAACAAGCTGGAGAAAGCTCGTCTAGCCTTCAGCCGCGCCCTGGAGCTCAACCCGAAGTGCGTGGGAGCCCTGGTTGGTCTCGCCGTCCTCGAGCTCAACAACAAAGAAGCTGACTCCATCAAGAACGGCGTGCAGCTGCTCTCCAGAGCCTACACCATCGACCCGAGCAACCCCATGGTGCTTAACCACCTGGCCAACCACTTCTTTTTCAAAAAGGATTACAGTAAAGTCCAGCATCTGGCCCTTCATGCGTTCCACAACACAGAGGTAGAGGCCATGCAGGCTGAGAGCTGCTATCAGCTGGCTCGCTCCTTCCACGTTCAGGAGGACTACGATCAGGCTTTTCAATATTACTACCAAGCTACTCAGTTCGCCTCGTCCACCTTCGTGCTGCCGTTCTTCGGCCTGGGACAGATGTACGTGTATCGGCGAGACAAAGAAAATGCTGCGCAGTGCTTCGAGAAGGTCTTGAAGGCGTACCCGAACAACTACGAAACCATGAAAATTCTCGGTTCACTTTACGCAACGTCAGACGACCAGGAGAAACGAGACATCGCTAAAGGCCATCTAAAGAAGGTCACTGAGCAGTATCCTGATGATGTAGAAGCCTGGATTGAACTTGCTCAGATTCTAGAGCAGACAGACATCCAGGGTGCTCTGTCTGCATACGGCACAGCCACACGCATTCTCCAGGAGAAGGTACAAGCTGACGTCCCCCCTGAGATCCTTAACAATCTGGGAGCTCTGCACTTCAGACTGGGGAACCTTGGAGAAGCAAAGaaatacttTCTGGCCTCTCTGGAGAGAGCCAAAGCGGAAGGCGAGCACGATGAGCATTACTACAACGCCATTTCTGTTACCACCTCCTACAATCTGGCGCGGCTCTACGAGGCCATGTGCGAGTTCCACGAGGCTGAGAAGCTCTACAAGAACATCCTGAGAGAACATCCAAACTACGTCGACTGTTACTTGCGTCTCGGAGCAATGGCCCGTGACAAAGGCAACTTCTACGAAGCCTCAGACTGGTTTAAAGAAGCTCTTCAGATCAACCAGGATCACCCAGATGCTTGGTCCCTGATCGGAAATCTCCACTTGGCCAAGCAGGAGTGGGGTCCCGGCCAGAAGAAGTTTGAGCGTATCCTGAAGCAGCCGTCCACTCAGAACGACACGTACTCCATGCTGGCGCTGGGTAACGTGTGGCTGCAGACACTACACCAGCCTACGAGGGATCGAGAAAAGgaaaagaggCACCAGGACAGAGCTTTGGCAATTTATAAACAAGTTCTGAGGAATGATGCTAAGAATCTGTATGCTGCCAATGGTATCGGAGCTGTTTTGGCCCACAAGGGTTACTTCCGTGAAGCACGTGACGTGTTTGCGCAGGTCCGGGAAGCCACAGCGGATATCAGTGACGTCTGGCTGAACCTGGCGCACATTTACGTGGAGCAGAAGCAGTACATCAGCGCTGTGcagatgTATGAGAACTGCCTGAAGAAATTCTACAAGTACCAGAACACTGAGGTGCTGCTGTACCTGGCTCGAGCGCTGTTCAAGTGCGGAAAGCTGCAGGAGTGCAAACAGATGCTGCTGAGGGCCCGTCATGTGGCTCCCAGCGACACAGTGTTGATGTTCAACGTAGCCTTGGTGCTGCAGCGGCTTGCCACTCTGGTGTTGAAGGATGAGAAGAGCAACCTGAAGGCCGTGTTGAGCGCAGTGAAGGAGCTGGAGCTCGCTCACAGGTACTTCAGCTACCTGAGTAAAGCCGGAGACAAGATGAGGTTCGACTTGGCACTGGCTGCAAGTGAAGCAAGGCAGTGCTCTGATCTGCTGAGTCAGGCGCAGTACCATGTGGCCCGTGCCCGTAAACAGGACgaggaggagaaggagctgCGAGCCAAGCAGGACCAGGAGCGAGAGTTGCTGAGGCAGCAGCTGCTCCGTGAACAGGAGGAGAAGAGGATCAAGGAGGCTGAGGAACAGAAGAAGCTCCTGGAGCAGCGAGCACAGTATGTGGAGAAGACCAAGAACCTCCTCAACTTCACTGATGAGATGAAGGAGTCTgcgaaagagaagaagaaagcagGAGGCGGCGGACGGCGTAAGAAAGGAGCCGAATACGACGACTTTGTCAACGATGACTCCGATGAAGAGCTGCCcctcaagaagaagaagaagaagaaggtacCTCGCAGTGGGAGCGAACAagaggaagaagatgaagagggagagaagaagCCACGCAAGAAAAGGAAGAGACCAGCTAAAGGTGGAGATGACAGAAGTGACGAGGATGAGGGCAGCTCAAGACCCAAAAAACAGCGCAAACCTCGAGAGCGCAAGAAGATTGAGAAGGCGAAACCTGAGCGTCTGCCGCAGTCTCTTAAAGGGAAGATCAAATCCAAGGCCATCATTTCCTCCTCGGATTCCTCTTCAGATGAGGATGGTCTGAAAATAGCTGAGGACCGTGGGAATCGGGACAGCGGCTCGGGATCTGAGGACGGAGGCCACCGTAAACGCATCGCCTCCGACAGCGAATCAGACGAAGAGCGACGTCGTTCAGCCAACTCGGAAGAGGACGAATCCGGCAGCGAGCGGCCAGTGAAGAAGAGGAGGCCGCAGCCTCAGTCTGATTCCGAGCAATCGGACAATGAGAGCAAGAGGAGCCGCTCGGACGGTTCTGAGGACGAATCCCGGGCCGGTTCTCCAGCGCCAGCCTCAGATCAGGGCTCTGAAAACGAGGGATCACCTCAGCGCTCAGATAATGAATCCGAGCCTGAGGGATCCAACAATGAGGCCTCAAATCGAGGCTCTGACGATGACAGTGACTGAGTTTAACACACTATAAACGTGTCATgaattcttttttcccccctcctgATGTTCTCTGTCCTAGATTAGATCACTGTCATGTCTCTTCTTTGGACACCTTTTATCTGCTGGTTGAGTAAATGAGGctttgctgactttttttttcccaaaatggctgaacagtttttttttcctgggggaaaaagcatcacaaaatgTTTTGAGTAAAATTGTTGAACTACTTTTGCGTTTTTCATGCAGTGGATCTTTCAAAATAAACCAAGATGGAGCCTAAATACCCGACAGAAACGAATTCCTTATTACAAGATGTGTACATTTGTACTGAATTGAAATAAATCCTTTTGAATCAGGAA

Function

symbol description
ctr9 Predicted to enable RNA polymerase II complex binding activity. Involved in heart development. Acts upstream of or within neural crest cell development; pigmentation; and somitogenesis. Located in nucleus. Part of Cdc73/Paf1 complex. Orthologous to human CTR9 (CTR9 homolog, Paf1/RNA polymerase II complex component).

NR:

description
PREDICTED: RNA polymerase-associated protein CTR9 homolog

GO: NA

KEGG:

id description
K15176 CTR9; RNA polymerase-associated protein CTR9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308556.1 True 3942 mRNA 0.52 24 6555719 6567757

Neighbor

gene id symbol gene type direction distance location
galnt18b galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200 coding downstream 93893 6358137 ~ 6461826 (-)
LOC113536569 LOC108271057,LOC108442067,LOC107741992,LOC107680499,LOC107657964 coding downstream 258843 6227094 ~ 6296876 (-)
LOC113536415 acyp2,LOC105896825 coding downstream 446347 6100029 ~ 6109372 (-)
LOC113536414 c10h2orf73 coding downstream 460941 6085672 ~ 6094778 (-)
sptbn1 sptbn1,LOC108270927,LOC108442064 coding downstream 470912 6001691 ~ 6084807 (-)
ampd3a ampd3,ampd3a,LOC108433033 coding upstream 54147 6621904 ~ 6643123 (-)
adma adm coding upstream 80991 6648748 ~ 6651135 (-)
swap70a LOC108271193 coding upstream 226782 6794539 ~ 6807030 (-)
LOC113536768 LOC108270562 coding upstream 242066 6809823 ~ 6816713 (-)
clcn4 clcn4,LOC108443897,LOC103025096,LOC107552404,LOC107705120,LOC107558374 coding upstream 263491 6831248 ~ 6845245 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding downstream 4137 6551325 ~ 6551582 (-)
G176992 eif4g2,LOC108433007 non-coding downstream 4457 6550914 ~ 6551262 (-)
G176990 NA non-coding downstream 10649 6543999 ~ 6545070 (-)
G176959 NA non-coding downstream 96088 6458366 ~ 6459631 (-)
G176938 NA non-coding downstream 197632 6357574 ~ 6358087 (-)
LOC117598400 NA non-coding upstream 11247 6579004 ~ 6589296 (-)
G177097 NA non-coding upstream 170564 6738321 ~ 6738608 (-)
G177374 notum non-coding upstream 490775 7058532 ~ 7059550 (-)
G177404 NA non-coding upstream 569872 7137629 ~ 7138904 (-)
LOC117598441 NA non-coding upstream 588471 7156228 ~ 7157621 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 847415 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1358901 5139610 ~ 5196818 (-)
G176307 NA other downstream 1474824 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2051390 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2559266 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 288998 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 912665 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1012677 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1108159 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1676892 8244649 ~ 8244721 (-)

Expression


Co-expression Network