LOC113536770 (mrvi1)


Basic Information

Item Value
gene id LOC113536770
gene name mrvi1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6570292 ~ 6578995 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308557.1
GTTCTCCTTATTTGTGTACTCTCCAGAGCCTCTGTAGAGATTGACTCTTCTGAAATAAAGCATACCAAAGTTGTAGCTTTGCCTTGGGTGTTCTTAAAGCCTCATTTCCATTTCAATGAGGCTTGAGAGTATGAAAAAGATCAGAGTGGCATTTAAATGATCCTTTATGTTTGAATTAAAATGCAGTCCTATTTCCATCTCATGGCGACTTGTCAAAgtggatttatttattgtagtgCTACAGCATTTGTTTATGATTTCCTCAGTGGTCATGGCTTCAGGGAATGCAAGCGCAGGCTGGAGTGGTCCTGAGATTTTGGCCTATCAGCAAACTGAAACCAGTGAGTCCAACTCTCCTTCTCAGCAGAATAATGTGCAGGATGGTGAACATCATGGATACAGCGCTTTGAGTTTGTCCATCGACTCTGGAACATCCTCGGCTGAACTTTCCCAGCTGCACTCTGACACTGAAAACTTCAGACTCAGCGACAGGTATTTATGTGACCACCTTGACATGAATGGCTTTTCAGAAGAAGAGCTGCTGAACATTACGTTTGAGGCATGTGATGCTGCAGGACAAGGAGAAGTTCTGGCCTCCACTGTGGTGCAGTTTCTACAGGCCATGACGGGCCACAGCGGTGGACAGGACAAGCTGACTGTCCTGAAGCACATGTTGGACCCAGAGGACCAAGATCCGCCCATCGACAGAGAAGCGTTTCACACCACCATGAGGAAGTGGATCGCTCGGTGCAGCCAGGATGGATTATTTGATGACAGCTACCAGGTGTCAGGATCAGACTCTTGCAAAGCAACTGGGAACATATTCATAGGAGCTGAATTTTCTCCTTCACTGGCTGAAACTACATTCACAGACCAAAGCGAATATCATTGTGACGCGAGTGATCTGTTGGGCCTGGTGGCGGAGCTGAAACACGCTCAGCGCAGACTGAGAGGACAGAACAGCAGCCTGCTGAGGAGCATATCTCAGTGCGAAGAAACCAACCTTCAGCTCATGATGGACGTTTCAGAGCTTCGCAGCAAACTAGCGAGCACCCAGCTGTGTGCAGGAAGAGCTCAGTCTCTGGCTGAGGAACTGGATGAAGCCCGACGAGCTGAGAGAAAGCCAAGAGAAAACCAGCCGAGCTCAGGCTAACGGCCATTCACTGaTGAAGGAGATTGAACATCTGAAGGCTCATATCAAACTCATCGAAGACATGAATGAAAAGCTGCTGCTGGAGAGAAATGGTGCAGAAGATCGGCTAAACAAGCTCAGAAGAGCAAACACGGA
>XM_034308558.1
GTTCTCCTTATTTGTGTACTCTCCAGAGCCTCTGTAGAGATTGACTCTTCTGAAATAAAGCATACCAAAGTTGTAGCTTTGCCTTGGGTGTTCTTAAAGCCTCATTTCCATTTCAATGAGGCTTGAGAGTATGAAAAAGATCAGAGTGGCATTTAAATGATCCTTTATGTTTGAATTAAAATGCAGTCCTATTTCCATCTCATGGCGACTTGTCAAAgtggatttatttattgtagtgCTACAGCATTTGTTTATGATTTCCTCAGTGGTCATGGCTTCAGGGAATGCAAGCGCAGGCTGGAGTGGTCCTGAGATTTTGGCCTATCAGCAAACTGAAACCAGTGAGTCCAACTCTCCTTCTCAGCAGAATAATGTGCAGGATGGTGAACATCATGGATACAGCGCTTTGAGTTTGTCCATCGACTCTGGAACATCCTCGGCTGAACTTTCCCAGCTGCACTCTGACACTGAAAACTTCAGACTCAGCGACAGGTATTTATGTGACCACCTTGACATGAATGGCTTTTCAGAAGAAGAGCTGCTGAACATTACGTTTGAGGCATGTGATGCTGCAGGACAAGGAGAAGTTCTGGCCTCCACTGTGGTGCAGTTTCTACAGGCCATGACGGGCCACAGCGGTGGACAGGACAAGCTGACTGTCCTGAAGCACATGTTGGACCCAGAGGACCAAGATCCGCCCATCGACAGAGAAGCGTTTCACACCACCATGAGGAAGTGGATCGCTCGGTGCAGCCAGGATGGATTATTTGATGACAGCTACCAGGTGTCAGGATCAGACTCTTGCAAAGCAACTGGGAACATATTCATAGGAGCTGAATTTTCTCCTTCACTGGCTGAAACTACATTCACAGACCAAAGCGAATATCATTGTGACGCGAGTGATCTGTTGGGCCTGGTGGCGGAGCTGAAACACGCTCAGCGCAGACTGAGAGGACAGAACAGCAGCCTGCTGAGGAGCATATCTCAGTGCGAAGAAACCAACCTTCAGCTCATGATGGACGTTTCAGAGCTTCGCAGCAAACTAGCGAGCACCCAGCTGTGTGCAGGAAGAGCTCAGTCTCTGGCTGAGGAACTGGATGAAGCCCGACGAGCTGAGAGAAAGCCAAGAGAAAACCAGCCGAGCTCAGGCTAACGGCCATTCACTGGTCTGTTACACTCCCAAGTCCAACAAACCTTTAAAATGTGTagaacaataataacaatattttaatcCTTAATGAACAAATGGATCTATAACTcgataaatatttacaaatatactgtacatgaatgAAGCAATTTTTAATATCTCTAACATTAAGGCAGCTAGCCGGCTAGGTAACTGCTAGTCAACTAGCGCAAATGTGTCACTGGTCGATATGAGTGGAATTTCAGGATCAGTGTCTCTATGTGCATAATCGTTTTTTAAGCATCCAAACCTGCCCAAATATAATGTTAACATAACAACCACGAGCCCTCCATCATTAAC
>XM_034308559.1
GTTCTCCTTATTTGTGTACTCTCCAGAGCCTCTGTAGAGATTGACTCTTCTGAAATAAAGCATACCAAAGTTGTAGCTTTGCCTTGGGTGTTCTTAAAGCCTCATTTCCATTTCAATGAGGCTTGAGAGTATGAAAAAGATCAGAGTGGCATTTAAATGATCCTTTATGTTTGAATTAAAATGCAGTCCTATTTCCATCTCATGGCGACTTGTCAAAgtggatttatttattgtagtgCTACAGCATTTGTTTATGATTTCCTCAGTGGTCATGGCTTCAGGGAATGCAAGCGCAGGCTGGAGTGGTCCTGAGATTTTGGCCTATCAGCAAACTGAAACCAGTGAGTCCAACTCTCCTTCTCAGCAGAATAATGTGCAGGATGGTGAACATCATGGATACAGCGCTTTGAGTTTGTCCATCGACTCTGGAACATCCTCGGCTGAACTTTCCCAGCTGCACTCTGACACTGAAAACTTCAGACTCAGCGACAGGTATTTATGTGACCACCTTGACATGAATGGCTTTTCAGAAGAAGAGCTGCTGAACATTACGTTTGAGGCATGTGATGCTGCAGGACAAGGAGAAGTTCTGGCCTCCACTGTGGTGCAGTTTCTACAGGCCATGACGGGCCACAGCGGTGGACAGGACAAGCTGACTGTCCTGAAGCACATGTTGGACCCAGAGGACCAAGATCCGCCCATCGACAGAGAAGCGTTTCACACCACCATGAGGAAGTGGATCGCTCGGTGCAGCCAGGATGGATTATTTGATGACAGCTACCAGGTGTCAGGATCAGACTCTTGCAAAGCAACTGGGAACAGAGCTGAATTTTCTCCTTCACTGGCTGAAACTACATTCACAGACCAAAGCGAATATCATTGTGACGCGAGTGATCTGTTGGGCCTGGTGGCGGAGCTGAAACACGCTCAGCGCAGACTGAGAGGACAGAACAGCAGCCTGCTGAGGAGCATATCTCAGTGCGAAGAAACCAACCTTCAGCTCATGATGGACGTTTCAGAGCTTCGCAGCAAACTAGCGAGCACCCAGCTGTGTGCAGGAAGAGCTCAGTCTCTGGCTGAGGAACTGGATGAAGCCCGACGAGCTGAGAGAAAGCCAAGAGAAAACCAGCCGAGCTCAGGCTAACGGCCATTCACTGaTGAAGGAGATTGAACATCTGAAGGCTCATATCAAACTCATCGAAGACATGAATGAAAAGCTGCTGCTGGAGAGAAATGGTGCAGAAGATCGGCTAAACAAGCTCAGAAGAGCAAACACGGA
>XM_034308560.1
CACGCTCAGCGCAGACTGAGAGGACAGAACAGCAGCCTGCTGAGGAGCATATCTCAGTGCGAAGAAACCAACCTTCAGCTCATGATGGACGTTTCAGAGCTTCGCAGCAAACTAGCGAGCACCCAGCTGTGTGCAGGAAGAGCTCAGTCTCTGGCTGAGGAACTGGATGAAGCCCGACGAGCTGAGAGAAAGCCAAGAGAAAACCAGCCGAGCTCAGGCTAACGGCCATTCACTGaTGAAGGAGATTGAACATCTGAAGGCTCATATCAAACTCATCGAAGACATGAATGAAAAGCTGCTGCTGGAGAGAAATGGTGCAGAAGATCGGCTAAACAAGCTCAGAAGAGCAAACACGGATGTCAGGGAGGAACTGGAGGAACTGCGGGTGTTACTAGCAGTGAAAGAAAGGGAAATCACTAAGaaaaacatCACACTGCAGAAGCTGAAGGAGACTTTTCTGGACTACAACAGAATCATTGATGGTCTGCAGAGTGATCTGGTGAGATTACAGGAGCACTCACAGCGAGCACTTTTGAGGTTTGATAAATGTTCAGCAAGTCTGAAAAGTGCTGCTGCCCCAAACCATTTCTCCCTACACCGCGAGATCCAGGAGGCTGAGCCGAGGACATGTGTCAAGGAAAACAGTGGCTCAGTGTCTGAGCTTCAGCCGCCTTCATCTCCAAAATCTATACAATTTCATCCACAAGATCAAGTCTGCAGAGTTGCGGGACACGTATACAGCTGAATCATTACAGAAAGCGTTCCTACAGGACCAGCAAGAGCAGACAAGCTCCAAAAAACAGCTACTGACAATTCTGAGAGAGCTGGAGCAGCCACGGCCTCTGTGGGACCAGCATCCAGAGCGCAGGCAGTTGGAAACACACTGGCAGACACAAGAAGTGCACAAAGCTCCACCCATCACCTGGTGGAAAGCTC

Function

symbol description
mrvi1 Predicted to be involved in cGMP-mediated signaling. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human IRAG1 (inositol 1,4,5-triphosphate receptor associated 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308557.1 False 1288 mRNA 0.48 9 6570292 6575006
XM_034308558.1 True 1489 mRNA 0.45 7 6570292 6574165
XM_034308559.1 False 1279 mRNA 0.48 9 6570292 6575006
XM_034308560.1 False 936 mRNA 0.50 11 6573511 6578995

Neighbor

gene id symbol gene type direction distance location
eif4g2a eif4g2,eif4g2a,LOC108433007,LOC107715453,LOC107738366,LOC107670782 coding upstream 15798 6544175 ~ 6554494 (+)
slc29a1b LOC108271058 coding upstream 344459 6212196 ~ 6225833 (+)
vipb LOC108270647 coding upstream 364587 6201849 ~ 6205705 (+)
LOC113536774 LOC108271104 coding upstream 378304 6187954 ~ 6191988 (+)
LOC113536616 LOC108271104 coding upstream 387616 6178432 ~ 6182676 (+)
lyve1a NA coding downstream 39246 6618241 ~ 6622623 (+)
sbf2 sbf2,LOC106587205,LOC106562098 coding downstream 77489 6656484 ~ 6782199 (+)
LOC113536733 LOC108270651,LOC108270616 coding downstream 241809 6820804 ~ 6822113 (+)
traf3ip2b LOC108270566 coding downstream 244412 6823407 ~ 6831740 (+)
LOC113536670 LOC108270652,LOC108443884 coding downstream 272445 6851440 ~ 6853641 (+)
G176964 NA non-coding upstream 15285 6554594 ~ 6555007 (+)
LOC117598391 NA non-coding upstream 470265 6094203 ~ 6100027 (+)
G176746 NA non-coding upstream 494865 6070947 ~ 6075427 (+)
G176700 NA non-coding upstream 618137 5951814 ~ 5952155 (+)
G176608 NA non-coding upstream 713050 5855525 ~ 5857242 (+)
G177159 NA non-coding downstream 280309 6859304 ~ 6860230 (+)
LOC113536609 NA non-coding downstream 284830 6863825 ~ 6875047 (+)
G177165 NA non-coding downstream 306583 6885578 ~ 6886403 (+)
G177141 NA non-coding downstream 325974 6904969 ~ 6907752 (+)
G177180 NA non-coding downstream 374648 6953643 ~ 6960207 (+)
G175977 pacsin3 other upstream 1909156 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 1925094 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 2270925 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 2912002 3647355 ~ 3658290 (+)
pth1b NA other upstream 2923177 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 543390 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 688836 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 1664360 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 1665957 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 1669021 8248016 ~ 8248088 (+)

Expression


Co-expression Network