LOC113524564 (LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257)


Basic Information

Item Value
gene id LOC113524564
gene name LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26421913 ~ 26429101 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308579.1
gaacatgaaccacacagatctcgctaacacactgcacaacaAACTCACCTCTGTGTATCAGCCAAAGTTCAAATCCAAACTTAGAGAGAAGTTTAAacgaattaatgaaggaatctcacagcatggaggctcagcacttctgaacgagatctacacagagctctacatcacagagggttggagtggagaagtcaataatgaacatgaggtgagacagattgagacagcttccaggagaccagcaacacaggagacacccatcaaatgtaatgagctctttaaagacaagtccatcagaagtgtgctgactaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctggactgggccgaaggaaaagcaaatcaggacgtcttcttcatgtttccacttccctttagagagctgaatctgatgaagcaggaaaatctcagtctgatgaatcttcttcatcactttttcccagaaatgagaaaactagaattaatagactcctacaaagtgttgttgatctttgatggtctggatgagtgtcgacttcctctaaatttccagaagaatgagagattgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacatCTCGACCAggtgcagccaatcagattcctcctgagtgtgtagaccaggtaacagaggtacgagggttcagtgatcctcagaaagaggagtacttcaggaagaggatcattgaccagagcctggccaataaagtcatcacacacatgaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagatcaaacacaaggaccaaaagtaccatcagaaatgtgaccctgatcctcagaaGACCAGAGacagtatcctggcactgggaaaactggctttccaacagctggagaaagggaACCTGATCTtttatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtactcaggtgtgtgtacccaaatcttcagagaggagtttgggcttcacctggggaaggtgttcagctttgtacatctgagtgttcaggagtttctggctgctttatatgcatttctctccttcatcagcagaaatgtacCAGAACAACAAACTTCTGATCTGTCTGACCTTTTCAGaaagtcaaacatgtctgatttcctcaggagtgcagtggacaaggccttacagagtgagaatggacacctggacctgtttctccgcttccttctgggtctctcactggagtccaatcagaatctcttacgaggcttaatgccacagaaaggaagcagctctcacagcaaacaggaaacagtcgagtacatcaaggagaagatcagggagaatccatctccagagaaatccatcaatctattccactgtctgaatgaactgaatgatcattctttATTGCACGAAGTACAAAAATACCTGAAAAGAGGAGGTTACAGGTGTCTTAGTGGAACAAGACTCTCTcttgctcagtggtcagctctggtgtttgtgttgctgaactcagaacaggagaTGGATGTATTTGATTTGAGTAAATATGACCAATCcgaggaatgtcttctgaggctgctgccagtggttAAAGCCTCCAGAACAGCtgtgctgtgggAGTGTAaactgacagaggaaagctgtagagttctgtcctcagttctctgctcaaactcctccagtGAAGTGCTCACAGGTCTGGCCTGCCGAGATGACAAGATGTCCCTTGATTCCCTGATTGATTTAGCTATCCGTCTGGATCACCTCATCTGCAACCAGCAAGTGCATAATTGTGTTGCGAGTCCAACTCCTGAAATGGACTGCTCTGTGCCTATGCAGCTGGGTCAGACCAGGTTAAGCACTGCAGAATTGCTGATAGACTCTGGAGCAGCTGGGAATTTCATGGACCATGATACCATTAGGAAGCCCAACATACCCACACAGCCATTTCAACATCCCTTAAAAATCCATGCTATTGATGGAGGACCCATAGGAAATGGTACAGTCACTCTGTGTACCAAACCCCTCCTGCTCAAGGTCAGCACTCTCCACCAGGAGTACATTCCCTTCCTCATCACCATCACAGCTGATCATAAGAACCTTGAGTACCTGAAAACAGCCAAGCTCTTGAACTCTCACCAAGCCCGGTGGGCCTTGTTCTTCGCTCATTTTGATTTCATGCTCTCTTGTAGGCCCAGCTCCAAGAACACCAAGGCAGACAACAAGGAACAGAAGGTGGAACACATACTGCCCCCTCCTGCTTCACTGCGTGaatgtaatctgacagaggaaagctgtagagctctgtcctcagttctcagatCAAACttctccagtctgagagaactgaacctgagtgagaataaactgcaggattcaggagtgaagctgctctctgctggactgaagaatccacactgtacactggagatactggaGATGCGTTAttgcagtattacagatgagggctgtgctgctctggcttcagctctgaggtcaaactcctcatcacacctgagagaactgaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308579.1 True 2725 mRNA 0.46 8 26421913 26429101

Neighbor

gene id symbol gene type direction distance location
LOC117598406 sdhaf2,LOC107685224 coding upstream 177193 26241072 ~ 26244720 (+)
LOC113524556 sdhaf2,LOC107685224 coding upstream 193997 26223817 ~ 26227916 (+)
helz2a helz2 coding upstream 283294 26099524 ~ 26138619 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding upstream 326775 26083657 ~ 26095138 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding upstream 359257 26039386 ~ 26062656 (+)
LOC117598404 LOC107716903 coding downstream 62016 26491117 ~ 26491773 (+)
rplp2l rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873 coding downstream 85449 26514550 ~ 26517299 (+)
LOC117598415 rplp2,LOC108260028,LOC103139322,LOC101168608 coding downstream 135200 26564301 ~ 26566306 (+)
LOC117598395 NA non-coding upstream 414 26420374 ~ 26421499 (+)
LOC117598393 NA non-coding upstream 1540 26419606 ~ 26420373 (+)
G188202 NA non-coding upstream 198992 26218931 ~ 26222921 (+)
G188179 LOC108270676,LOC108439640 non-coding upstream 255121 26153529 ~ 26166792 (+)
G188184 NA non-coding upstream 257157 26161314 ~ 26164756 (+)
LOC117598394 NA non-coding downstream 34 26429135 ~ 26436719 (+)
LOC117598392 LOC108270747,LOC108273219,LOC108273545,LOC108261282,LOC108273546,LOC108274210,LOC108261633,LOC108263642,LOC108268260,LOC108273691 non-coding downstream 16878 26445979 ~ 26511407 (+)
G188396 NA non-coding downstream 92312 26521413 ~ 26574817 (+)
LOC117598444 NA non-coding downstream 131690 26560791 ~ 26561738 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other upstream 69878 26260530 ~ 26352035 (+)
polr2l polr2l other upstream 209798 26185862 ~ 26212115 (+)
G188164 NA other upstream 211903 26206942 ~ 26210010 (+)
LOC113523924 nell1 other upstream 725041 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1853270 24563400 ~ 24568643 (+)

Expression


Co-expression Network