LOC117598404 (LOC107716903)


Basic Information

Item Value
gene id LOC117598404
gene name LOC107716903
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26491117 ~ 26491773 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308580.1
ATGGTCATGGTCAAAGCTCCCCACTCTTCCCATATGGGAGGAGCTTGGGAAAGGATGATCAAAATGGCACAACGCATTCTTGATGCACTGCTGCTAAAAACCAGCCTTTCTCGTCTTACCCATGAAGTCTTGACTACtctcatgtctgaagtcatggCAATAATGAATGCTAGACCTTTACTTCCTATTTCTTCTGATCCTGATGCATTGGAAGTTCTGTCTCCTTCAATGCTTCTCACACAAAAGGCTAGTACTGTACCAGCACCTCTTGGAGACTTTGACATGAAGGACCTCTACAAGAAAGAATGGAGACAGGTTCAATGTCTGGCTGATGCTTTCTGGAAGGCATGGAGGAGAGACTATCTTGCAACATTGCAAGTACGGAGAAAGTGGACGGAGGAAAAACGAAACCTTCAAGAAGGAGATGTCGTCTTGCTTAAGGACTCTAATGTGAAACGCAATGAGTGGCCAATTGGGCTTATTGTGAAAACCATACCTAGCAGTGATGATAGAGTGAGAAAGGTAGAAGTAAAGATAATTAAAGAAGGATCTGCTAAGGTACATCTGAGGCCCATCTCAGAGGTGGTATTACTCCTGCCTGGGAAGTCATAGAAGGTTCAACAGCAGTATAAAAAGTCATTATACCAGGCGGGGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308580.1 True 657 mRNA 0.44 1 26491117 26491773

Neighbor

gene id symbol gene type direction distance location
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding upstream 62016 26421913 ~ 26429101 (+)
LOC117598406 sdhaf2,LOC107685224 coding upstream 246397 26241072 ~ 26244720 (+)
LOC113524556 sdhaf2,LOC107685224 coding upstream 263201 26223817 ~ 26227916 (+)
helz2a helz2 coding upstream 352498 26099524 ~ 26138619 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding upstream 395979 26083657 ~ 26095138 (+)
rplp2l rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873 coding downstream 22777 26514550 ~ 26517299 (+)
LOC117598415 rplp2,LOC108260028,LOC103139322,LOC101168608 coding downstream 72528 26564301 ~ 26566306 (+)
LOC117598394 NA non-coding upstream 54398 26429135 ~ 26436719 (+)
LOC117598395 NA non-coding upstream 69618 26420374 ~ 26421499 (+)
LOC117598393 NA non-coding upstream 70744 26419606 ~ 26420373 (+)
G188202 NA non-coding upstream 268196 26218931 ~ 26222921 (+)
G188179 LOC108270676,LOC108439640 non-coding upstream 324325 26153529 ~ 26166792 (+)
G188396 NA non-coding downstream 29640 26521413 ~ 26574817 (+)
LOC117598444 NA non-coding downstream 69018 26560791 ~ 26561738 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other upstream 139082 26260530 ~ 26352035 (+)
polr2l polr2l other upstream 279002 26185862 ~ 26212115 (+)
G188164 NA other upstream 281107 26206942 ~ 26210010 (+)
LOC113523924 nell1 other upstream 794245 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1922474 24563400 ~ 24568643 (+)

Expression


Co-expression Network