LOC117598406 (sdhaf2,LOC107685224)


Basic Information

Item Value
gene id LOC117598406
gene name sdhaf2,LOC107685224
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26241072 ~ 26244720 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308614.1
TACATGTCCCGAGAAGCTGCTCGGCGATGACGTCATACGGACAAATCAGAAGCCGGAGTCTCATCCGGGGATTTTTCTGTGTTAGCATTCGCTTATGAAAGACGGGCCATAATGCTCTCAGCAGCAATAAGGAGCACTCTCCTGCATGGCGTTCGGTCTCCTCTGCGTTCAGCCGTTCCGGTGTCAGTGCTGAGTCGGTCTTACCGCGGTGAAGCTCCAGAGTCGGAGCAGGTCGAGATCCCACTGCCTCCATGGGAGGAGAAGAAAAACGAGCCGGTAGACATCAAGAGGAAGCGCCTGCTGTATGAGAGTAGGAAGAGAGGCATGCTGGAGAACTGCATCCTGCTCAGCCTTTTTGCCAAGCGGCACCTGGAGAGCATGAGCGAATCGCAGCTGCGACAGTACGACCGCCTCATCAACGAGCCGAGTAACGACTGGGACATCTACTACTGGGCAACAGAAGCGAAACCTACCCCAGATGTCTATCAGGGAGAAGTCATGGACCTGCTGAAGGAGTTCACCAAGAACagagagatggagcagagaCTGGATGCCCCAAACCTCGAGTACCTCGATAAAAGCAGCCAGTGAGGTCTTTATTCTCCTGCTGCGCTGCTGCGAATGTGGCTCGTGACCAGTGGGCGGTGTGTTAAGAGAGTGTG

Function

symbol description
sdhaf2 Predicted to be involved in aerobic respiration; mitochondrial respiratory chain complex II assembly; and protein-FAD linkage. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in paraganglioma. Orthologous to human SDHAF2 (succinate dehydrogenase complex assembly factor 2).

GO:

id name namespace
GO:0006121 mitochondrial electron transport, succinate to ubiquinone biological_process
GO:0018293 protein-FAD linkage biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K18168 SDHAF2, SDH5; succinate dehydrogenase assembly factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308614.1 True 662 mRNA 0.55 4 26241072 26244720

Neighbor

gene id symbol gene type direction distance location
LOC113524556 sdhaf2,LOC107685224 coding upstream 13156 26223817 ~ 26227916 (+)
helz2a helz2 coding upstream 102453 26099524 ~ 26138619 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding upstream 145934 26083657 ~ 26095138 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding upstream 178416 26039386 ~ 26062656 (+)
tollip tollip coding upstream 310483 25924180 ~ 25930589 (+)
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding downstream 177193 26421913 ~ 26429101 (+)
LOC117598404 LOC107716903 coding downstream 246397 26491117 ~ 26491773 (+)
rplp2l rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873 coding downstream 269830 26514550 ~ 26517299 (+)
LOC117598415 rplp2,LOC108260028,LOC103139322,LOC101168608 coding downstream 319581 26564301 ~ 26566306 (+)
G188202 NA non-coding upstream 18151 26218931 ~ 26222921 (+)
G188179 LOC108270676,LOC108439640 non-coding upstream 74280 26153529 ~ 26166792 (+)
G188184 NA non-coding upstream 76316 26161314 ~ 26164756 (+)
G188168 NA non-coding upstream 131224 26109623 ~ 26109848 (+)
G188127 LOC108271167 non-coding upstream 247669 25988798 ~ 25993403 (+)
LOC117598393 NA non-coding downstream 174886 26419606 ~ 26420373 (+)
LOC117598395 NA non-coding downstream 175654 26420374 ~ 26421499 (+)
G188395 NA non-coding downstream 182648 26427368 ~ 26575866 (+)
LOC117598394 NA non-coding downstream 184415 26429135 ~ 26436719 (+)
LOC117598392 LOC108270747,LOC108273219,LOC108273545,LOC108261282,LOC108273546,LOC108274210,LOC108261633,LOC108263642,LOC108268260,LOC108273691 non-coding downstream 201259 26445979 ~ 26511407 (+)
polr2l polr2l other upstream 28957 26185862 ~ 26212115 (+)
G188164 NA other upstream 31062 26206942 ~ 26210010 (+)
LOC113523924 nell1 other upstream 544200 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1672429 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 2030309 24207876 ~ 24210763 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 15810 26260530 ~ 26352035 (+)

Expression


Co-expression Network