slc30a7 (slc30a7,LOC107588064)


Basic Information

Item Value
gene id slc30a7
gene name slc30a7,LOC107588064
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12645186 ~ 12666010 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308640.1
GCCACACGCGGACGTCAACGTGATGACGTcacccctctccctctctctcccgtAATAACAGTGGAAGGAACCCGGACCTGCAGGTGTTGGTGCTGGCTAGGTTAAGATGTTACCATTATCCATTAAAGATGACGAATACAAACCTGCAAAGTTCAATCTGGTCCTCAAACTCTCCGGATGGTTCAGATCAATTCTGGCTGACAAGACATCGCggaatttatttttcttcctgtgCCTGAATTTGTCCTTTGCCTTTGTGGAGTTACTGTACGGCATATGGAGTAACAGTTTAGGGCTGATATCAGATTCCTTTCACATGTTTTTCGACTGCACAGCACTACTGGCAGGTCTTGCAGCATCAGTGATTTCACGGTGGAGGTCCAATGACTCCTTCTCATACGGTTATGTCAGAGCAGAAGTGCTTGCAGGTTTCGTCAACGGTCTCTTCCTCATCTTCACTGCTTTTTTTATCTTCTCAGAAGGAGTGGAGAGAGCGTTAGAACCTCCGGATGTGCATCACGAACGCTTGCTGCCCGTGTCCATTGCAGGGCTCCTTGTCAACCTTGTCGGCATCTTTGTGTTCCAGCACGGTGGACATGGACACTCTCATGGTGGAGAagGTCATGGGCACAGCCACTCTCTATTTAACGGCAGTGTGAGCCACGGACACAGCCATGGGGGACACGGGCACAGCCATGATTCTAAACACGGGCATGGGCACGGTCACGGTCACGGTCACGATCACGGTCACGATCACGATCACGGACACGATCACGGACACGGTCACGATCGTGGACACGGCCATTCACATGAGGAGCCTCACTGCCACGatgatCACTTGCACAGGCCAGAAAAAGGCTCCAGCAAACAGATCTTACAAGGAGTTTTTCTCCACATCGTTGCTGATACGTTGGGAAGTATCGGCGTCATCATCTCAGCCTTCCTGATGCAGAAGTACAACCTAATGATCGCTGATCCGATCTGCTCCATGCTCATCGCCATTCTCATAGGCGTCAGTGTGGTTCCACTGCTGAGGGAATCCATTGGGATTCTGATGCAGCGAACTCCACCTGGTCTTGACCACACCCTTCCTGAGTGCTACCAGAGAGTGCAGCAGCTGCAGGGTGTGTATAACTTACAGGAGCCGCACTTCTGGACGCTGTGCACTGATGTCTACATCGGCACACTGAAACTCCTCGTGGCTCCAGACGCTGATTCTCGATGGATCCTCAGTCAGACGCACAATATTTTCACACAGGTGGGAGTAAGGCAGCTGTATGTTCAGATCGATGTGGCGGCCATGTAAGAGTTACCCTGATTCAGGAGTCCTGGGACCAAAGCCCTCTGTGCTGCTACATGAAGCTCATCACCAAACCCTGCCCCCTTTTGCTCCTTCTCTTAATTTCTCTGGGTTTCTCGACACCGTCATTACCAGTCGGACCAATCTGGAGCGGCCGCAGTACAGTACGGTACACTGACTCTTTCCAGGAAAACCAAACAACATGAAGACTACGTTGGGGCCCCTGGTCAACAGCTGTCCAtgttcctaattttttttttaaatagcccTCAAAGACTTTAGTCTGTATTTGGTGTCTTGTCCTGATAACGGTCAGAATGAggttttaattttgtgtttgtttaagaAGGAAAAGCCTCTAACAGTATGTGAAGTGAATCATTGCTAGTATTTTCTCTGTGGTCTGACGTCTTTGCAGCTGCAGACGTCAGTCACTCGTGTTGTCCCCCACTTCAATTCAGCATCATGCTTTGATCTCTTaagtgcctttttttcccccagtggaTCTCTCGGACAATCTCCCACACGTCTCCTTCATCCAACATCTGGAAAATCATGGGTTATGCCTGTAGGTTCATTCTAGCCAGTTTTAACATtcctttgccttttttttttactgcatggTGTTCTCCGATTGATTCACTGATTATTTCTTAGATCTCTGCTCATGTAAAACTGGATGAAACACCAGCTTTATTCAGCCATAAATGGATCTGATGAGCCACTTAAATGTGAGAAGTCCATAATTTAAATGCccatatggatttttttaataagtaaataacacATCTGTGCCACAGGCCAGTACATTTGTGCAATTCAATAAATTATATTGCCATCtgatttgtactttttttgcatttgatgGAATAAAATCATGAATAATCATACACTGAGAAA

Function

symbol description
slc30a7 Predicted to enable zinc ion transmembrane transporter activity. Predicted to act upstream of or within zinc ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including blastoderm; notochord; prechordal plate; pronephric duct; and yolk. Orthologous to human SLC30A7 (solute carrier family 30 member 7).

NR:

description
zinc transporter 7 isoform X1

GO: NA

KEGG:

id description
K14692 SLC30A5_7, ZNT5_7, MTP, MSC2; solute carrier family 30 (zinc transporter), member 5/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308640.1 True 2200 mRNA 0.47 11 12645186 12666010

Neighbor

gene id symbol gene type direction distance location
vcam1b vcam1 coding upstream 21238 12615074 ~ 12623948 (+)
LOC117598432 NA coding upstream 39381 12602331 ~ 12605805 (+)
LOC113536666 gpr88 coding upstream 54822 12587473 ~ 12590364 (+)
LOC117598419 gpr88 coding upstream 78585 12565218 ~ 12566601 (+)
rtca rtca,LOC107653637,LOC107715104,LOC107669846 coding upstream 137283 12497851 ~ 12507903 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715 coding downstream 50574 12716584 ~ 12720429 (+)
zbtb37 zbtb37 coding downstream 56847 12722857 ~ 12732692 (+)
eps15l1a eps15l1 coding downstream 138304 12804314 ~ 12837848 (+)
mrpl54 mrpl54 coding downstream 281030 12947040 ~ 12948807 (+)
malt2 LOC108270956,LOC108414270 coding downstream 284388 12950398 ~ 12974799 (+)
G180246 NA non-coding upstream 147535 12496731 ~ 12497651 (+)
G180242 NA non-coding upstream 158442 12486506 ~ 12486744 (+)
G180205 NA non-coding upstream 222034 12422702 ~ 12423152 (+)
G180192 NA non-coding upstream 251695 12392887 ~ 12393491 (+)
G180144 NA non-coding upstream 458216 12181015 ~ 12186970 (+)
G180516 NA non-coding downstream 170858 12836868 ~ 12841282 (+)
G180534 NA non-coding downstream 184950 12850960 ~ 12851179 (+)
G180695 NA non-coding downstream 470127 13136137 ~ 13203148 (+)
G180738 NA non-coding downstream 535861 13201871 ~ 13285070 (+)
G180833 NA non-coding downstream 633270 13299280 ~ 13302297 (+)
LOC117598398 NA other upstream 43122 12573157 ~ 12602064 (+)
cdc14ab cdc14a other upstream 83405 12512888 ~ 12561781 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 311505 12328052 ~ 12333681 (+)
G180121 NA other upstream 589437 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 1214289 11428613 ~ 11430897 (+)
ankmy1 ankmy1 other downstream 430363 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 570467 13236477 ~ 13239637 (+)
trnag-gcc_9 NA other downstream 584360 13250370 ~ 13250441 (+)
trnag-gcc_10 NA other downstream 590047 13256057 ~ 13256124 (+)
trnag-gcc_11 NA other downstream 591998 13258008 ~ 13258076 (+)

Expression


Co-expression Network