slc38a7 (slc38a7,LOC107596458,LOC107683258)


Basic Information

Item Value
gene id slc38a7
gene name slc38a7,LOC107596458,LOC107683258
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26083657 ~ 26095138 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308692.1
TAAGAACTACAACATCCGTCGTGCGTAGCTGCAGGTCATATGATCCTGCACGTGACGCTGGTGCTGGGCTCAGCCGCAAACTCATGGCTGGTGTGTGGAGGAGCAGAAGGTGGGAGAGCTTTCTACAGACTCATGATACAGGACTTGGTTCCAATCCAGCACAGGAGATTGGTTTTTCACCCagggccgtgtgtgtgtgtgcgtttttgtgagtgtgtgtgtgtgtgtgtgtgctgtccgTCTGAAGGAAGACCTGCATGGCATTGTTTTGCCCCTGTGTTAATACAGCTCCAGAAACACCACTGCCTGCTAACCATTTCCTGTGACGTCTGGAGCCGTGACccctgaccctgtgtgtgtgtcactttgGTGTAAAAAAACTGTGTGAGACATGGCCGTGAACTCCGAGCCGAGTGATTGGGGATACGCTGGAAATGACGAAGAGAAAGAGCCGCTACTTGTGGCACCGCATGCTCAGTCGAAGCAGACTCAGGGCAAGACTTCGCCGTATGGCGCGGTGTTTATTGTGGTAAACGCCGccctgggggcggggcttctcAATTTTCCTGCTGCGTTCTACATGGCTGGAGGAGTTGTAGCTGGAGTAGTGCTGCAGatgtgtttactgATCTTCATCATCACCGGCTTGGTGATCCTTGCGTATTGTTCTCAGGTGAGCAACGAGAGCACGTATCAGGAAGTGGTCCGTGCCGTGTGTGGGAAAATTCTGGGTATCGTGTGCGAGATCGCCATTGCTGTCTACACCTTCGGCACGTGCATAGCCTTTCTGATCATCATCGGAGATCAGCTGGACAAGCTGATCAACGCGATGACTCATGAGTCGGATGGTGCTGTCAGCTCTCACTGGTATACAGACCGCAAATTCACCATCACAGTCACCTCTGTGCTCATCATCCTCCCTCTGTCCATCCCCAAAGAGATCGGCTTCCAGAAATATGCCagCACATTCAGCGTCATCGGTACCTGGTATGTGACCGCCATAATCGTCATCAAATACGTCTGGCCAGACCCAGAAATGTCACCTGGAATCATTCCTACCAGtccTGCATCCTGGACTGCCGTGTTCAACGCCATGCCGACTATCTGCTTCGGATTCcagtgTCATGTGAGCAGCGTTCCAGTGTTTAACAGTATGAGGAGTGCGACGCTTCGGCCATGGGGGGGCGTGGTGACACTCAGCATGATCATCTGCCTGTTCGTCTACAcaggaacagGTGTGTGCGGTTTCCTGTCGTTCGGTTCCACGGTGAGTCAGGACGTGCTGATGTCATATCCTTCCACAGATATCGCCGTGGCCATTGCCAGagccttcatcatcatcagtgtggTCACTTCATATCCCATACTGCACTTCTGCGGAAGagccGTGTTAGAAGGTCTGTGGCTGCGTTTTAACGGGACAGACGTGGACACAGACGTGGTGAGAGAGCGAAGACGGCGTGTCCTGTACACACTTGTCTGGTTCTGTCTCACACTAATCCTCGCTCTCACTATCCCCGATATTGGGCGTGTCATCTCGCTCATCGGCGGCCTCGCAGcctccttcatcttcatcttcccAGGTTTGTGTTTGATTGAGGCCAAGATCTCAGAGCATGATGCCAGATCAGCCAGCTGGCATGCGCTGGTGCTTTACGGAATCCTCATGGTCACAGTTGGCACGTTCATCTTCGGCCAGACGACCACCAATGCCATCTACAGAGACATCCTCAACCACTGAGACGGCTCGGACAGCTGTGCTTGACTTGCACGTAATGAAAGAGTTGCCGAACGGCAACGCCACTTCCACACAGCGACCTCGGCTTTAAATCTGCAAAAACGTTGCACAAAGGAACAAACGATTAGATCTCGTAATAAGCTTATTAGGCTGTTCAGCATGCGGCATGAAGCCTCCTACTATAGACTCCATTAACACACTACACAAGCATGCTGGTTTATTAGTTCAACTTTAAAGCAGACGTCCGATCAAAATCGATtcgttttttaaatttcctttaTTAACCTTTAACCTCTTTATTGCATTCTTATATTATTTGTCAGTATTTGTGGGAAGTTgctaaaaaatgaaatttagcCAAACTGTAAAACGTTTTTAGCATCTCAAGCTGGCTATAAGGCTAATATAGCTAACGagtaatggggaaaaaataaggcCGCTACTTCGCATacctaaatcatcacacactctgctcaaaccATTGTTATCTATAGAAACGGAGCGAAGGACGTCACCGAGCCAAACGCTCTAGTAGCCGAATCACTGCGTTGATTTTGTCGCGCTTGTTAGCatcattagcctcatagctccaacACAAAAAGACTGAACTAATAGGCAGTTATTGTGATATTGGCAAACATCTCCTCAATTCTGTATgcttcaatgtttttttttttctgaattgtcactttaatataataatataataatttttataataatccTTTTATCAGTTGAACCATTTTATTAGAGattaatgcaaaaatgatttttttttaaaaaattctaaccAGAATAATTCaatttattcctttattccttCTGATACTGTTCCTTTTTGTGATTTACGTGACCAATACACGACTGCACCGATCAGCTTTggaagaatataataaaatgaaacggtgtgaaggaaaaaaaacaattagtgAAGTTTagagaagctgtgtgtgttttttttttttttttctttttcttttttctctctctccattaaCACTATGTTATTGATGGTGTGGTGAGGGCGATGTTCTCTCAGGTGTCTTCCTGTAGCACATAGTGGTTATTTTAGTCATTAAATGTTGGGTAACTGTTCATAATCGGTAAATAGCTCCATGAAATTCGGTATTTAAAtacagctagctggctagcgttACACACACAGGGTTGTGTTATCAATGATACGATGATAATGGGACGGAGAAATAATGCACAGCCTCTCTGAACTAAGACatatttggctgttttttttttttttaatagatttgtCATGCCTGCACGCATCAGAATTATGTCGGTCATTCACAGTTTCAATATTTAGTACTGTTTTAGCACGTCGGAGGTTTacacttttgtattttgtacgCATGTGCTGAGTGGTTATATGGTATATCACACTAATCAACCCAGTTTCCCCCAAAGTAGCTGATTGTTGTCTCCTTATTTTGGACATATCTGAAACGTCAACGGTGTCGTTTTTGGAGAAGACAATCCACGCAGAAAGAACtggtgtaacttttttttttcacataaaatgATGCAATACAATGTGAGTGGAGGAAAAAGGTGCAGGTTGTAATTTTCGTATTTTCAGCATGTCTCatcatgaacatttttttaaatatttgtttgaaCTCAATAAAGGGATTTAAGTGTTTGAT

Function

symbol description
slc38a7 Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in mesoderm; musculature system; myotome; somite; and yolk syncytial layer. Orthologous to human SLC38A7 (solute carrier family 38 member 7).

NR:

description
PREDICTED: putative sodium-coupled neutral amino acid transporter 7

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14994 SLC38A7_8; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 7/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308692.1 True 3399 mRNA 0.45 12 26083657 26095138

Neighbor

gene id symbol gene type direction distance location
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding upstream 21001 26039386 ~ 26062656 (+)
tollip tollip coding upstream 153068 25924180 ~ 25930589 (+)
trnar-acg_9 NA coding upstream 577162 25506423 ~ 25506495 (+)
slc6a5 slc6a5 coding upstream 598847 25455708 ~ 25484810 (+)
prmt3 prmt3 coding upstream 634896 25387312 ~ 25448761 (+)
helz2a helz2 coding downstream 4386 26099524 ~ 26138619 (+)
LOC113524556 sdhaf2,LOC107685224 coding downstream 128679 26223817 ~ 26227916 (+)
LOC117598406 sdhaf2,LOC107685224 coding downstream 145934 26241072 ~ 26244720 (+)
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding downstream 326775 26421913 ~ 26429101 (+)
LOC117598404 LOC107716903 coding downstream 395979 26491117 ~ 26491773 (+)
G188127 LOC108271167 non-coding upstream 90254 25988798 ~ 25993403 (+)
G187970 NA non-coding upstream 133685 25941892 ~ 25949972 (+)
G187961 NA non-coding upstream 164052 25918551 ~ 25919605 (+)
G187895 lrp4 non-coding upstream 333025 25747110 ~ 25750632 (+)
G187782 NA non-coding upstream 738166 25345291 ~ 25345491 (+)
G188168 NA non-coding downstream 14485 26109623 ~ 26109848 (+)
G188179 LOC108270676,LOC108439640 non-coding downstream 58391 26153529 ~ 26166792 (+)
G188184 NA non-coding downstream 66176 26161314 ~ 26164756 (+)
G188202 NA non-coding downstream 123793 26218931 ~ 26222921 (+)
LOC117598393 NA non-coding downstream 324468 26419606 ~ 26420373 (+)
LOC113523924 nell1 other upstream 386785 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1515014 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1872894 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 3702637 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 4124698 21958888 ~ 21958959 (+)
polr2l polr2l other downstream 90724 26185862 ~ 26212115 (+)
G188164 NA other downstream 111804 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 165392 26260530 ~ 26352035 (+)

Expression


Co-expression Network