LOC113536779 (LOC108271307)



Basic Information


Item Value
gene id LOC113536779
gene name LOC108271307
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5434667 ~ 5452341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034308719.1
ACATCAGGAGTCAGCACGCGCCGTGGCGCGCGGACACAGCGGCGCTTAAGTGCACCAGCTCGGAGATGCTGCACAGCAGCGCGCGCGGCCACACTTCATACCGCGTTTTAACTACGACGGGACATGAACTGTGCCTCCAGCCACCCAAGAAAGTATTTCTAACAAGAGTATGAGCTGTCCTGAGGGGTGGAAATCTAAAACCTCTTCTTCCTTATTCGTTGTGGGAAGTGAGTGATGGTGCGCTCGTGCTGAGGAGTAACGTTTTTTGGAGGAAAGCGCACCATATAAGTACATCAGACTCCGTCTTCTGTAAACTGTATACACCAAAAGCACAGATTCCACTGCAGCCCCTGCACTCATAGGGCCTGATACCATCATGCCTATCATCAGTGCAAATGACTTCAGTAGTTTCTCCATCAGCACAGATGACAGCAGCTTCGACCGTTTTTTTACCGAGATCCCGGAGACGGAGACCATTAAAGGAGTGTACTTTCAGCGAGCCCAGCTACTACGTGACCCCTCCGCACTCGCAAACGTCGACCACAGCAAACTGGCCCTTGTGAATGTTGGTGGGGATCGTTACACATTTGCCTGGAGCACGCTGGATGACTTCCCACTCTCCCGTTTGGGCCAGCTACGTCACTGCAGCAGTCCCGAAGACATTGCCCGGCTGTGTGATGACTACGACGAGGTGAGCCGCGAGTTCTTCTTTGATCGCAGCGCCACCGCCTTCCGTGTCATCCTCAACTTCCTGGCGGCGGGCAAGCTGAGGCTGCTGAGGCAGGCGtgtgctgtttttctctcagaTGAGCTCGCTTACTGGGGCATCGAGCCCACTGGGATGGAGCACTGCTGCAGGCGTGTTATGATCACCTGCCTGGAGGAGGTGGCTGAGAAGAAGCGGAAAGAAGAGGCTAGGAGGCAGAAGAGGCTGATGAAACAACCAGAACAAGAGAAGAAGGAAGGGTTCCATGGCTTCTTGAGCCGTCTCAGGGACGTGGTGGAGAACCCACACTCTGGCTGGCTGGGCAAGACCTTTGCCTGTGTCTCGGTGGCTATGATTGCTGTGACCGTGGTCAGCTTGTGCATCAGCACTATGCCTGATctcagagaggaagagagccGAGGCGAATGTTCCCAGAGGTGTCAACAGATATTCATCGTGGAGACCGTGTGCGTGGCCTGGTTTACCCTCGAGCTCATGCTACGCTTCCTGCAGGCCCGTAGCAAGCTGGAATTTGCGCGTGAGCCACTCAACATCATTGATGCCGTGGCCATTCTGCCATACTACATCTCCCTGCTGGTGGATGAGAGAGATCTGAGGCTGGGAGATCGTACAAATGTTGGTGGAGGGTATTTGGATAAGCTGGGTCTGATTCTGAGGCTCATGCGTGCCCTGCGCATCCTGTACGTCATGCGGCTGGCGAGGCACTCACTGGGTTTGCAGACTCTGGGCCTGACAGTGCAGAAGAGCATGCATGATTTCGGTCTTCTGctactttttgtgtgtgtggctgtcaCCTTGTTCTCCCCTCTCGTACACTTGGCTGACGAGCGCCATGGCTTCAACAGCATCCCTGCCTGCTATTGGTGGGCCATCATCTCCATGACCACAGTGGGCTATGGCGACATGGTCCCACGCACCATCCCCGGTCAGGTGGTGGCCTTCAGCGGCATCCTGAGTGGCATCCTCATCATGGCCTTCCCAGCTACCTCTATTTTCCACGTGTTCTCACGCTCCTACCGTGAGCTGAGACAGGAACACGAAATGATGTGCAAAGATGAAAGAGCGGCCTTATTAGCCACGGAGGAGGTCTGGACAGAATCAGAGAGGAGCTCCTACTGTTGGACGCAAGAATATCCCAACAAACTCGATGAGGGTGAGAATAGGGATGGGTCTAAACAGTCTGTTTTTGCAACCACAGCGTGCTTGGACTTGCCATAGATACTGGAACTAGTGATCATGGGGGTTGCAGTAAAACTTGGTATGGTGCTCATGTACAAAAGCTTTCATGTGCGCAAGGAAACAAGGCGTGCCAGATGACAGGGAACAAACCCACACTGTAGAAACGACAGAAAAATGGTGGAGGGCAACAGCAAAAGTGGAGAAAGAAGgtCTCCTGGTAGAGCATATGTTTTCTACTTGCTGCAGCAGCTTCCTTGGGTGCAAAGTTTGTGCCGAGCCCTGGCAGGAGACTTCTAACCAGTGCATGAGGTGCTAACACTTATGTGCGTAGGGTTGCTGGGTTCTCTGAAGTATTGAGTGTAGTTCAAGACAGTATAGGCTTGATgactcagcaaaaaaaaaaaaaaaaaaactttgc

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034308719.1 True 2324 mRNA 0.53 6 5434667 5452341

Neighbor


gene id symbol gene type direction distance location
LOC113536772 LOC108270937,LOC108412780,LOC107730181,LOC107561442,LOC562097,LOC107663023,LOC106562562,LOC108250636 coding downstream 15986 5407596 ~ 5418681 (-)
sirt3 sirt3,LOC107663051 coding downstream 68432 5360418 ~ 5366235 (-)
cdhr5a LOC108270552,LOC108412775 coding downstream 109209 5318352 ~ 5325458 (-)
trnai-uau_2 NA coding downstream 120413 5314162 ~ 5314254 (-)
trnai-uau_1 NA coding downstream 144073 5290502 ~ 5290594 (-)
dpep1 dpep1,LOC107730179 coding upstream 13332 5465673 ~ 5481287 (-)
hp LOC108270509 coding upstream 53576 5505917 ~ 5509942 (-)
dhodh dhodh,LOC107730177 coding upstream 84711 5537052 ~ 5545521 (-)
ist1 ist1,LOC107705324,LOC107730168,LOC107600347 coding upstream 114319 5566660 ~ 5573176 (-)
LOC113536546 hnrnpll,hnrll,LOC106564787 coding upstream 138733 5591074 ~ 5664681 (-)
G176354 NA non-coding downstream 27568 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 321399 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 587526 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 593974 4839988 ~ 4840693 (-)
G176015 NA non-coding downstream 698251 4732382 ~ 4736416 (-)
G176556 NA non-coding upstream 179485 5631826 ~ 5715020 (-)
G176817 NA non-coding upstream 630487 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 719857 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 731994 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 808456 6260797 ~ 6261240 (-)
trip4 trip4 other downstream 237849 5139610 ~ 5196818 (-)
G176307 NA other downstream 353772 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 930338 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1438214 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 1524774 3851847 ~ 3909893 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 244039 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 1404414 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 2028081 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 2128093 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 2223575 7675916 ~ 7764430 (-)

Expression



Co-expression Network