vrk3 (LOC108270942)


Basic Information

Item Value
gene id vrk3
gene name LOC108270942
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 965975 ~ 976359 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308732.1
ctaGTTTGTCCCTTACCGCGCGCCGTTGCTGAGTCACGTGACGCACTCAAAATGGCTGACTGTTAACTTCCCTAGATAACGAAGCACAGCTTTCAGACCAggtttattcacatttattttaaaaacagactATTTCTCGTGCTGCTGTGCTTCCTTTTTATGTGATTTGAATCCATTTAAGCATCCAGACGAAGAAAAGTTAATTATGAGATAGTTATTGACTTAATTAAGCAGCGATTGTTTTGTTAGAGAATATCCTCCATTATGCCTTTACATTTCTGCCCACACTGCGGCTCTAAACTGCAGCCTGGGTTCAGGTTTTGTCCGTGCTGTGGAGAGAAGCTGCCCAGCCTGCTAGATCTTCCTGAATCCACAAACACAGAGTTGTCAGAGGCACCTGATGCGGTGTGTAAGCTCAGCACACAGGTGGGGTTAATGAGTACAGCCCCTGTCCTGACTCAGGACATCTCCCTGACAGATGCTTCTGGTgatccttcctcctcctcctcctcctcttcctcctcagcaCTGATTCGCTCTCCCATCAAATCCACACGCAGAGCCACGGGCAGGAAAACCTGCAGTCTATCCACTCCACCTAAACCTGCAGCAAACAAGGATCAGAATCCTGTCGCTTCGCCTCAGAAACGAAAAGCATCCCGGGAAgtgaaagaggaggaagaacaaaagaaagtgtTTTCTCCGCCTCCTCAGACTTCGCCCTCAGGCAAAGCTAAGCGGACGAAGCGAGCGTGTGCTGTGGAGCCTGTGCAGGAAGGACAGGAGTTTTGTGATCAGTCAGGAAAGAAATGGAGACTCGGGAAGCTGTTGAATCAGACGGACGTGGAGCTGACGTACGAGGTGCAACAGGTTGGTGTACGGAGCTCATCTAATGACTCGAAACACATAATGAGACTGGGTGCCAAAGATGGACAGCTGTTTAACGAACAGAACTTTCTCCAAAGAGCTGCCAAACCTGCTGCAGTGGAGAAGTGGATGAAGAAACTCGGTTTGAACTTCCTCGGAATTCCATCATGTGTTGGTTTTGGTCTTCATGAAACCTACAGGTTTTTGATATTTCCTGATATGGGCTGCACTCTGCAGTCAGTTCTggacacacagagggagagtcTCAGTGAGAGAGAAGTCCTGCAGCTGGCACTGCGATTATTGGATGCTCTGGAGTTCATCCATGAAAACGAGTACGTTCACGCGGACATCCACGCAGGAAACGTCTACATCAGCGCGCGGGGCCACTCTCAGgTTTTTCTGTCCGGTTTTGGTCACGCGTTCCGGTTCTGTCCTGGAGGGAAACATGTGGAATATCGGGAAGGCGGCCGGACGCCTCATCAGGGAAACCTCACCTTCATCAGTGTGGATTCACACAAAGGGGCCGgTCCGTCTCGGCGCAGTGATCTGCAGTCTCTGGGTTTTTGTCTGCTCTTCTGGCTGACCGGTGCTCTGCCCTGGAGCCCCGTCACTCAGTCCGGCTCAGCTGTTTCTGCTCAGAaggacaggtacaTGGCTGATATTCCTGGATTAATGAGCTActgttttaaaaagaagaaagtttcagggGCGTTACAGAGCTACCTGTCTCAGGTGATGAGCCTGCACTACACTGAGAAGCCGAATTACTCGGAGCTGAAACGTGAGCTGAGCGAGGCTTTACAGGAGCTGGGGGGAACTTTGGGAGAACCGCTGATTTGCAGgtaaAAACTAAAACAGAGTGAAGAGAGATGACACTCGCACCAGATTGCCTTGGATTTTACAATAAACCATTTGCTTTTAGAGGAAacaggatgatgatgattattattattattattatgatgtttTAAGGGTGTGTTCTAATGTTTACACTGCAGTGCCATGactgtttatccattttaaaatggtttaaactGTTGACATTTCActtagtttctgtttttttgtttttgtttttagcactATCACTGTTgttagtaattttatttttcacagtaGTTATGAATAATTGTTTGTTAACTGTGTGGATTTGACAATAAACCATTTTATTAATAGTTCtgtta

Function

NR:

description
inactive serine/threonine-protein kinase VRK3-like isoform X2

GO: NA

KEGG:

id description
K08816 VRK; vaccinia related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308732.1 True 2054 mRNA 0.47 14 965975 976359

Neighbor

gene id symbol gene type direction distance location
LOC113536732 LOC108270943,LOC108444425 coding upstream 587 961369 ~ 965388 (+)
gfod2 gfod2,LOC108444435,LOC107750644,LOC107674467,LOC107741392 coding upstream 8666 949766 ~ 957309 (+)
cenpt cenpt coding upstream 17671 936344 ~ 948304 (+)
cog4 gfod2,cog4,LOC107741389,LOC107700400,LOC107750533,LOC107674430 coding upstream 35873 913040 ~ 930102 (+)
dnaaf1 NA coding upstream 57540 896147 ~ 908435 (+)
acd LOC108271006 coding downstream 884 977243 ~ 987383 (+)
ogfod1 NA coding downstream 11834 988193 ~ 999215 (+)
LOC113536571 gnao1,LOC108271008,LOC108444429,LOC108264367,LOC103374184 coding downstream 30446 1006805 ~ 1024473 (+)
LOC113536635 tpm1,LOC103040917,LOC107739081 coding downstream 58201 1034560 ~ 1043087 (+)
fbxo22 fbxo22 coding downstream 72908 1049267 ~ 1058585 (+)
G173854 NA non-coding upstream 55658 909639 ~ 910317 (+)
G173823 NA non-coding upstream 145835 764340 ~ 820140 (+)
G173821 NA non-coding upstream 175718 762204 ~ 790257 (+)
G173805 NA non-coding upstream 194703 691296 ~ 771272 (+)
G173761 NA non-coding upstream 226468 687350 ~ 739507 (+)
G173865 NA non-coding downstream 48128 1024487 ~ 1025616 (+)
G173880 NA non-coding downstream 157659 1134018 ~ 1134612 (+)
G173893 LOC103139438,LOC106905931 non-coding downstream 400845 1377204 ~ 1432962 (+)
G174018 NA non-coding downstream 641874 1618233 ~ 1618745 (+)
G174023 NA non-coding downstream 652485 1628844 ~ 1629199 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 143252 790374 ~ 822723 (+)
G173819 NA other upstream 223265 742021 ~ 742710 (+)
G173748 NA other upstream 395649 568813 ~ 570326 (+)
G173898 NA other downstream 385423 1361782 ~ 1364931 (+)
G174536 NA other downstream 1082611 2058970 ~ 2060283 (+)
G174546 NA other downstream 1101718 2078077 ~ 2078627 (+)
pth1b NA other downstream 2669384 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 2670996 3647355 ~ 3658290 (+)

Expression


Co-expression Network