nid1a (nid1)


Basic Information

Item Value
gene id nid1a
gene name nid1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7515247 ~ 7547820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308740.1
AAAAGCTGAGCGCGCGGGTcggtgtgggtgtatgtgtacatgcgtgagtgtgtgtgtagagttgtAGCGATGGCGTCCTGTGCGCGCGCGGTGTGGCTCGGGCTGAAGCTGCTGTTTATCGCGGGCTCGGTGTCGGTAAACTGCGCGAGCCGAAGCGACCTGTTCGACTACGGAGCTCAGTTTGGAGATCAGACTCTGCAGTCCGGAAATGACGAGACTCAGCAAGTCCACTTAGACCGAGCTGTGCTCTTCTTCCAGGACAGCTTTGAAAAAGTTTACGTCAACACCAATGGCTTTGTCTCCGTGGCTAACCCTCCAGCTCAGTCAGAGTATTTGGGTAAGATGCCCGCTACGTTTGGCATTATCGCAGCTTTCCTTGGGGACCTGGACACCAGCGACGGAGTTGGAAAAGTCTACTTTAGGCAGGACACCAGCCCAGAATTGTTGCAGAGGATTGGCGAGCAGATCAGCCAGGCTTATCCGGACGAGAGCAAGCTTGAGCCGACTCATGCCTTCGTTGTGACCTGGGAGAACGTGGCAGCTCAGGGAGCTCTGGAAAGAGGAGACGGATCTCATAAAAAAAGAAACACTTTCCAGCTTGTCTTAGCATCTACAGAATTGACCACCTATGCCATCCTGCTCTACCCAAAAGATGAAATGCATTACTTCTCCGCTCCTGTAGGGGATGAGAGTCGGGCCATTGAGGCTGGATTCAGCCAGGGTCAGATTCAGGGCTGGGTCTGGACTACACAAGGCCCTTATTATCGCATCCCCACTAATGTCCAGAACACTAACACCAGAGAACTCACAGAACTAACAAATTCTGGCACACGTGGTGTGTGGGTTTACAAGATTGGCTCCTCCACCTTTTTCACTGATATTATACCTGGCCATGTCACCACCGTAGTGGAGAATGTGTTTCCTCAGGAAGCCACTGAAAATCCAGAGCCAAGATACTCTGGAATGGGTGAATCAGTCTTATTTGACATACAACCACCAACCTCCCAGGATAACAACCCTCATGAAATCTACCCGTTACCTCGGGGACCCAGGCCAGTCAACCCACAGGTGGTGATTTTGGACGGACAGGACGAAGACATAAATGTTAATGtgttttcttattatgagaAGTGCGCCAACAACAGGCACAAGTGCTCTAGTTTCGCAGATTGCCGAGATTACGACACAGGTTACTGCTGCCATTGTAAGCCTGGCTTTTATGGCAACGGGAAGGAATGTGTCGCTGAGGGCATACCGCAGAGGATGAATGGGAAAGTTAATGGCAGAATCTACGTCGGCAGCGCAAGTTCCCCGGTCGAGTTCTCTAACAACGACTTGCACTCGTATGTAGTAGTGAACGACGGACGAGCTTATGTAGCCATTAGCAGCATCCCAGCCAGCGTCGGCCACTCCCTGCAGCCTCTCGCCTCACTCGGAGGGGTCATTGGCTGGGCCTTTGCCCTGGAGCAGCCGGGATATGAGAATGGCTTCAGCGTAATTGGAGGGGTTTTCACTCGTCAGGCCGAGGTGACCTTTCAGCCAGGTGGAGAGAAACTCTCCATCAACCAGGAGTTCAAAGGAATCGACGAGCACAACCACCTAGTGGTGAGCACTCGGCTGGACGGAAGAATCCCAGAAGTCTCACCTGGTGCCAGTGTCCAAATAGACCCCTACGTCGAGATCTACCAATACGCTAGCAACTTTATAACATCCTCCTCCACGCGGGAATACACAGTAAGCCCCCCTGATGGTCCTGTCAAGACTCTGAACTACCTATGGAGGCAGAGGATCACGTTCCAAAGCTGCCCGCATGCTGATTCTGTTCGCTCCATGCCACCCAGCCAGCAGCTCAGCGTGGACCAGGTGTTCGTCATGTACGACTCTGCCAACCAGCTCATCCGCTATGCCATGAGCAACAAGGTCGGCCCCATCAgTGGAACCCCACAGCAGAACCCGTGTTACACTGGGAGACATGGATGCGACACCAATGCAGTCTGCCACCCTGGTGAGGGAAACCAGTTCACATGCCAGTGTGCTTCAGGCTTCACAGGCGACGGACGCACATGCTACGATATTGATGAATGTGCGGAGACCCCACAGATCTGTGGCGCTTACGCCATCTGCAATAATCATCCCGGGACTTTCCGCTGCGAGTGTATGGACGGCTTCCAGTTCGGCCCCGATGGCCGCACCTGTGTCCAAGTGCACCATGACATCAATCACTCAGAGGGGACACACAACTGTGATATAGCTGAACGCGCCCGCTGCAGCTACACCGGTGGATCAACGTACATCTGCTCCTGTCTGCCCGGCTTCACGGGAGATGGCAGAGCATGCCATGATATTGATGAGTGCCAAACTTCTCGTTGCCATAGAGACGCCATCTGTCACAACACTCAAGGCTCTTTTACCTGTCAGTGCAATACAGGTTTCTACGGCGACGGCTTCAGCTGCACAGCTGATTCAGtgcgTGAGAAAACTGCATGCGAGCGACACAGAGAGACAGCCCTGGCAGCCACGTCTACCGGTGGATATGGCTTCTTCCGGCCACGCCCATCGGTAGGCCAGTACATCCCCACATGTGACCACAATGGAGAGTACATGCCTATGCAGTGCCATGAGAGCATCGGCCAGTGCTGGTGCATGTACCCCAACGGCCAGGAGATCCCTGGAACCCGAACTGGACCAGGAAGCACACCCACATGTGAAGACTTTGTCCCTGTTGGCCCCACCACCAGGCCAGATGTCAGACCACCACCTCCAGGAGCTAATCTTCTATTTGCCCAGAATGGCAAAATAGATAACATCCCACTGGACGGCAGCAACATGAAGAAAGAGGAGACTAAGACCATGCTGCATCTACCAGATAAAGTGGTGATTGCTGTGGCATATGACTGCATGGACAAGATGGTGTACTGGACAGACATCACACAGCCATCCATCAGCAGAGCCAGCGTTCAGGGAGGCCAGCCCACGGCCATTATCACAAAAGATTTAGGAAGTCCTGAAGGAATAGCGATCGACCACCTGTCCCGAAACATGTACTGGACAGACTCCGTTTCGGACCGGATCGAGGTGTCTACGCTAGACGGACAGCATCGACGTGTGCTCTTTGACACTGACCTCGTAAACCCCAGGGCCATCATCACTGACCCTGTCAATGGACGTCTGTACTGGTCAGACTGGAACAGAGACAGCCCTAAGATCGAGATGTCCAACATGGACGGTACAGATAGGACTGTACTTGTGAATGATGGTATAGAACTCCCCAATGGACTGTCCTTTGATCCTCATACCAGGCAACTGTGCTGGGCAGATGCAGGTATACGTAAGGTGGAGTGCATTAACCCTTACACTTGGGTGAGGAGAAAGGTGGTGGAGGGACTGCAGTACCCCTTCAGCATTGTCACCTATGGAAGAAACCTTTACTACACAGACTGGAGAAGGCAAGCTGTGGTATCTGTGGACCATGTGGCAGGGAAAGAGGTGGATGAATTCCTGCCTCAGAAGAGATCGCGCCTGTACGGCGTCACCACCTCGTACCCACAATGCCCTCAAGCTGAAAGGAACTACTGCTCGAGCAATAACGGCGGCTGCTCGCACTTGTGTCTGCCGCGGCCGGGTGGCTTCACCTGCCGCTGTCCTGATGCCCGGGATGACACGTGCATCGAGAGAGACCGTAACATCTGAGAGCGCTTGAATGATGGACACGCAGGTGTGTCAACGAGACGGGGATAAAGCAACACCTGTGACACATGATTCAAGGACAAAAACCATTGCGTATTGTAATTAGGGAGAGAAGATCCATTTCAGCCGCTAAACCCCGCCCCATCACTAAAGTCCTGGGACACTGCAGATGTGATGAAGTAATGTgtgaaagaggaataaatgaaGTTAGACATGGATATGGATATATAAACTGTGAGAGGAGGAGATCTCAGGATAAaatgagaggaagaagagagcaCAAAGAGCTGGGATAGACTGCAGAAGGAAGGAGGAGTGAATATGGTGCTTTTCAAACTGTGACCAATAGGGACGTCCAGGGGTCCGTGAGCCGGGGCAAGAAGGTCCAAGTCAAAACTGGTCCATTTTGCATCTAGGTTCTTGTTGATTGTTGAATTATTAAAATCTTTATAGTTTCAAATTTATTTCAGTATATTATTAACTGGTTATGTGGTAATTAAGTGATTAGTGACAGCATCATGTTTGAAAGTCTTAAGTCATGTGGAGACAAAATATAGCCATACTTCTGCATTTTAGCAAGCAAGTAAATGCCACGTTTTTTTCCTAAGTTAATATGACTATATATGGGGTGTGGGGTGGAAGGGGTGGGATAGTTATGGGCTggatattatcattatattaattatttacgTACATCAATATAATAGTTacaattattttccaattttgTTCTTAGATTACCACTTTTTAATTGTAAAGTAAATGGCTGATATAGAGCcactattttaaaaacatatttcaggtTAAAAgaaacagccaaaaattaaattaacacactttccctctctcccaAATGTAGTccatcagccaagacatgtttcttcttctttatttctacaaatgttgctaacaagtaagCCTCCAATTTAGCATTATACTAGTCTCTCACAAATCTAGACTCCTAACTTTCGCTAGATAAtctggtgggaaaaaaaaaaaaaaacactgccaaGAACCACCTACTTCACAGAAAGAGCCAGTTATACTGACACGGTAGATAACCAACCACAGACCTTTTTCTTTGACCagtttcaaacaaaactctttaATGACTTGATGGAATTTAGACAAGTTTTGTCAGTCCATTGACTATATCTTACTCCATAAAGCTTGTTATCATGGTGTTCAAAAGCTGAAAGGCGGAGCTAATTAGATTGCAACCTTCATGATCCttaagcttgtggccagaaaaatgtacaaaagttaTCAGATTTGACAGAGCAATTGAGGCTCCACCCACAGCTCGCAATGagtctgatatcttttgtacacttgtctggccacaagcttcaggatcttgaaggttgcaatctgattggctgtttgcaCCACTGGTTTCAGATGggaaaacaaacatttgaacCCAGTGACACAATCAACTTTTTGGAGCACGATAGAGtctctatattaaaaaaaaaaaaaaaaagattactaaACTATGTGCAGA

Function

symbol description
nid1 Enables collagen binding activity; laminin binding activity; and proteoglycan binding activity. Predicted to be involved in basement membrane organization. Predicted to act upstream of or within cell-matrix adhesion; glomerular basement membrane development; and positive regulation of cell-substrate adhesion. Located in basement membrane. Colocalizes with collagen-containing extracellular matrix.

NR:

description
nidogen-1

GO: NA

KEGG:

id description
K06826 NID; nidogen (entactin)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308740.1 True 5194 mRNA 0.49 22 7515247 7547820

Neighbor

gene id symbol gene type direction distance location
rbm34 rbm34 coding downstream 14347 7492501 ~ 7500900 (-)
irf2bp2b irf2bp2 coding downstream 77757 7434319 ~ 7437490 (-)
strn strn,LOC108271087,LOC108430145,LOC107702041,LOC107701064 coding downstream 160917 7296707 ~ 7354330 (-)
cfap410 c10h21orf2,cunh21orf2,LOC107713232,LOC107564578 coding downstream 262654 7248348 ~ 7252593 (-)
si:dkey-93h22.8 LOC108270890 coding downstream 312383 7192255 ~ 7202864 (-)
ero1b ero1b coding upstream 16560 7564380 ~ 7577840 (-)
mctp2b LOC108271124,LOC108428479 coding upstream 47195 7595015 ~ 7623473 (-)
LOC113536417 LOC108271125 coding upstream 77676 7625496 ~ 7656954 (-)
lrrc28 lrrc28,LOC107662304,LOC107706938,LOC107690794 coding upstream 111226 7659046 ~ 7671661 (-)
mespaa mespbb,LOC108270617,LOC106024706 coding upstream 251845 7799665 ~ 7801552 (-)
G177682 NA non-coding downstream 6059 7508851 ~ 7509188 (-)
G177562 NA non-coding downstream 35859 7479158 ~ 7479388 (-)
G177559 NA non-coding downstream 44037 7470974 ~ 7471210 (-)
G177550 NA non-coding downstream 72852 7441891 ~ 7442395 (-)
G177547 NA non-coding downstream 74859 7440179 ~ 7440388 (-)
G177691 NA non-coding upstream 3702 7551522 ~ 7551750 (-)
G177729 NA non-coding upstream 159691 7707511 ~ 7755018 (-)
G177733 NA non-coding upstream 181093 7728913 ~ 7750806 (-)
G177807 NA non-coding upstream 378473 7926293 ~ 7927058 (-)
LOC113536653 NA non-coding upstream 723287 8271107 ~ 8275360 (-)
si:dkey-56d12.4 LOC108270721 other downstream 31130 7480422 ~ 7484117 (-)
LOC113536608 LOC108270551 other downstream 653899 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1806943 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 2318429 5139610 ~ 5196818 (-)
G176307 NA other downstream 2434352 5079817 ~ 5080895 (-)
si:ch1073-365p7.2 NA other upstream 32614 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 128096 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 696829 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 698883 8246703 ~ 8246775 (-)
trnar-acg_8 NA other upstream 699870 8247690 ~ 8247762 (-)

Expression


Co-expression Network