LOC113523928 (ap2a2,LOC106562310,LOC106587467)


Basic Information

Item Value
gene id LOC113523928
gene name ap2a2,LOC106562310,LOC106587467
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26039386 ~ 26062656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308780.1
GCTGCTCTGACACCAAGAGCTCAGCGTGACACCGGAAATggagtagaagaagaagaacatcgCCAGCCGCAGCTAATCTAGCCTAGCCTAGCCTAGCCTTTCTGTCCTGCTCGTTTTCGGAAAAAAAGGGACTCAGAGAGAACTCATAAAGAAGGAAACATGCCGGCGGTTTCTAAAGGAGACGGGATGCGCGGCCTCGCCGTTTTCATCTCCGACATCCGGAACTGTAAAAGTAAGGAGGCAGAGATCAAGAGAATAAACAAAGAGCTGGCCAACATTCGCTCCAAGTTTAAAGgagatAAAGCTCTGGACGGATACAGTAAGAAGAAATATGTGTGTAAgctgctgtttattttcctgctGGGCCACGACATCGACTTCGGCCACATGGAGGCGGTGAACCTTCTCAGCTCCAACAAATACACGGAGAAACAGATCGGCTACCTGTTTATCTCGGTGCTGGTGAACAGCAACAGCGATCTGATCCGCCTCATCAACAACGCCATAAAGAACGACCTGAGCAGCAGGAACCCCACCTTCATGAACCTGGCCCTGCACTGCATCGCCAACGTGGGCAGCAGAGAGATGGCCGAGGCGTTCGCTTCAGAGGTGCCGCGCATCCTGGTGGCAGGagaCACAATGGACAGCGTGAAGCAGAGCGCAGCTCTGTGTTTGTTACGGCTCAACCGGACGTCCCCTGATCTGATCCCCATGGGCGAGTGGACGTCCCGTGTGGTGCATCTTCTCAACGATCAGCACCTGGGAGTGGTGACGGCAGCAACGAGTCTCATCATCACTCTGGCTCAGAAGAACCCAGACGACTTTAAGACCGCCGTGTCTCTGGCTGTGGCCAGACTCAGCAGGATCGTCACGTCAGCATCCACTGACCTGCAGGACTACACGTATTATTTTGTAGCAGCTCCGTGGCTGTCAGTCAAACTGCTCCGCCTACTGCAGTGTTATCCACCACCAgAGGATGCAGCGATTCGTGGACGCCTAACCGAGTGCCTGGAGACGATCCTGAACAAAGCGCAGGAGCCTCCCAAGTCCAAGAAAGTGCAGCACTCCAACGCCAAGAACGCGGTGCTGTTCGAAGCCATCAGTCTCATCATCCATCACGACAGtgaGCCGACCCTGCTGGTGCGAGCCTGTAATCAGTTGGGTCAGTTCCTTCAGCACAGAGAGACGAACCTGCGCTATCTGGCCCTGGAGAGCATGTGCACTCTGGCGAGTTCAGAGTTTTCCCACGAGGCTGTAAAAACCCACATCGACACTGTAATCAATGCACTAAAGaCTGAGCGCGATGTGAGTGTGAGGCAGCGTGCTGTGGATCTTCTCTACGCCATGTGCGACCGCAGCAACGCCAAACAGATTGTGGCGGAGATGCTCAGCTACCTGGAGACAGCCGATTACTCGATCAGAGAAGAGATTGTTTTGAAAGTGGCCATCCTGGCAGAAAAGTACGCAGTGGATTACACGTGGTACGTAGACACCATCCTGAACCTGATCCGCATCGCCGGGGATTACGTAAGCGAGGAGGTGTGGTACCGAGTCATTCAGATCGTCATCAACCGAGATGACGTGCAGGGATATGCTGCGAAAACCGTGTTTGAGGCCCTGCAGGCTCCAGCCTGCCACGAAAACCTGGTCAAAGTGGGCGGCTACATTCTGGGCGAGTTCGGAAATCTTATTGCCGGAGACCCGCGCTCAAGTCCACTTATTCAGTTTAACCTGCTCCACTCGAAGTTCCACCTGTGTTCGGTTCCCACTCGGGCTCTGCTCCTTTCGGCTTACGTCAAGTTCATCAACCTTTTCCCCGAGGTGAAGGGCACCATACAGGAGGTGCTTCGTTCCGACAGTCAGCTGCGTAACGCTGATGTGGAGCTGCAGCAGCGTGCTGTCGAGTACCTGCGCCTCAGCTGCATCGCCAGCACAGATATACTGGCCACAGTGTTGGAGGAGATGCCGCCTTTCCCCGAGCGAGAATCCTCCATCTTGGCtaagctgaagaagaagaaggggtcGGGACCCGGTTCCGAGGTGGACGACAGTCGAAAGGAGCGCAGTGCTAACGTTAACGGGAGCAGCGATCACACCGTGGCCAGCACAAATGCAAAGGTGAACTCTTCTCCTCCGTCTGACCTTCTGAGTTTGGgaaacagcacagctctgaacTCTGCCAGTCCTCCAGCGGCCTCCAACACGGGCAGCCTGCTGGTGGACGTGTTCTCCGAAAACCTGCCTGCAGCCAGTTTCGGTTCCTCTGCATCCATCATCGAGGAAAACCTCTCGAGGTTCGTGTGTAAGAATAACGGTGTCCTGTACGAGAACCAGCTGCTGCAGATTGGCCTAAAGTCTGAATTCAGACAGAACTTGGGCCGCATGTACGTCTTCTATGGAAACAAAACCTCGACACAGTTTATGAATTTCTCCTCCTCTGTGGTGTGCCATGACGCTCTCAGTAATCAGCTGAACGTTCACACGAAAGCGTCCGATCCGGTAATAGACGGAGGAGCTCAGCTTCAGCAGGTCCTCAACATCGAGTGCTTATCCGACTTTGTAGATGCGCCAGTGCTCAATATAcatttcagGTATGGAGGCAGCATCCAGAACATCTCTGTCAGACTTCCCATCACCCTCAACAAGTTCTTCCAGCCCACGGAAATGACGTCTCAAGAGTTCTTTCAGCGCTGGAAGCAGCTCAGCGCTCCTCAGCAGGAGGTGCAAAAGATCTTCAAGGCTAAGCACTCCATGGACACCGAGATCACCAAGGCTAAGattATCGGGTTCGGAACAGCACTGCTAGATGGAGTAGACCCGAATCCTTCTAATTTTGTTGGCGCTGGTGTTATACACACAAAGACAATACAAGTCGGCTGTCTGCTGAGACTAGAGCCCAACACACAAGCACAGATGTACCGGCTCACGCTGAGGACTAGTCGGGACACTGTGTCTCAGAGGCTGTGCGAGCTGCTTTCTGAACAGTTCTGATCGCTGCTGTATCCCATCAGGCCTTGCTAGCCGATGAGGACGGTCCGTCATTTCCTCTCTGAGCGTATAAACACTCTTGCGCTTCCCTGACACACTCCTGATGGTCTGATGTAGCTCATTTCACATCTATCCTTATATACGTCAATATTAATCTGTGTACAGTGTAAATGTCCCTatgaaacttttattttttactcccATATATAAGTGACCTTCTCTGCCCTACATTTAGCGTGACTAATCCTTGTCTGCTTAAATCAGGCCTTCAGCTATATACAAGGCTTTTTTATTATGATTTCTACCATTTTGTTACACACcaaatgcagagagaaaaacgtgtattaaaagaaagaaagctggaCAGAACCCCATCCTGCCTGACGTTACACTGAGTTGAATCCAGTCGCTGAAACAAGTGCCTTGGACTAGTACAGCTGGAACTCTGAGTCCTGTGGAGAGGAAAGATTTCAGTATTTCGTTGATCTCATATAGAGTAAATCAATTCTCAGGGGACGACAGCTTAATTCTTCTTCTAAAGCCTCAGTGGCAGAATCAGTAACAAGTGCTTTGaaagtgatgaaataaaagtgcttgacatttaaaaaaaaaaaaaaaaaaaaaaaaaagtcatggcTTGGCCACTGCCAGCTCTCCACGTGCCTTCAACTTGTGTGTTCCTTCCGACTGTTGCTGTGTGACCGTGCGTCTGTTGTCTGCATCTGATAGCATGCTCTACTCCCAACTTTCAGATGGGTTTTTGCCAATTAAACTACAACATGACACTCTAA

Function

symbol description
ap2a2 Predicted to enable several functions, including clathrin adaptor activity; phosphatidylinositol binding activity; and protein kinase binding activity. Involved in clathrin-dependent endocytosis. Part of AP-2 adaptor complex.

GO: NA

KEGG:

id description
K11824 AP2A; AP-2 complex subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308780.1 True 3779 mRNA 0.51 22 26039386 26062656

Neighbor

gene id symbol gene type direction distance location
tollip tollip coding upstream 108797 25924180 ~ 25930589 (+)
trnar-acg_9 NA coding upstream 532891 25506423 ~ 25506495 (+)
slc6a5 slc6a5 coding upstream 554576 25455708 ~ 25484810 (+)
prmt3 prmt3 coding upstream 590625 25387312 ~ 25448761 (+)
htatip2 htatip2,LOC107557281,LOC107662344,LOC107579432 coding upstream 656386 25357983 ~ 25383000 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding downstream 21001 26083657 ~ 26095138 (+)
helz2a helz2 coding downstream 36868 26099524 ~ 26138619 (+)
LOC113524556 sdhaf2,LOC107685224 coding downstream 161161 26223817 ~ 26227916 (+)
LOC117598406 sdhaf2,LOC107685224 coding downstream 178416 26241072 ~ 26244720 (+)
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding downstream 359257 26421913 ~ 26429101 (+)
G188127 LOC108271167 non-coding upstream 45983 25988798 ~ 25993403 (+)
G187970 NA non-coding upstream 89414 25941892 ~ 25949972 (+)
G187961 NA non-coding upstream 119781 25918551 ~ 25919605 (+)
G187895 lrp4 non-coding upstream 288754 25747110 ~ 25750632 (+)
G187782 NA non-coding upstream 693895 25345291 ~ 25345491 (+)
G188168 NA non-coding downstream 46967 26109623 ~ 26109848 (+)
G188179 LOC108270676,LOC108439640 non-coding downstream 90873 26153529 ~ 26166792 (+)
G188184 NA non-coding downstream 98658 26161314 ~ 26164756 (+)
G188202 NA non-coding downstream 156275 26218931 ~ 26222921 (+)
LOC117598393 NA non-coding downstream 356950 26419606 ~ 26420373 (+)
LOC113523924 nell1 other upstream 342514 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1470743 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1828623 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 3658366 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 4080427 21958888 ~ 21958959 (+)
polr2l polr2l other downstream 123206 26185862 ~ 26212115 (+)
G188164 NA other downstream 144286 26206942 ~ 26210010 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 197874 26260530 ~ 26352035 (+)

Expression


Co-expression Network