vtg3 (LOC108270710)


Basic Information

Item Value
gene id vtg3
gene name LOC108270710
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19271952 ~ 19287643 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308787.1
TAAGGTTATGCCTGATCAGGTGATTTCACTCCTGGCACTCGCCATGCGGTGGattctcttctgtctctttgtGGCCTTGGCTGCAAGCGAGACCACGAATTATGAGCCCACCTTGAACCCCCATAAgacatatgaatataaatatgaaggAGTGGTGAATATTGGGCGTGATACACCAGACCTGGCTGAGTCTGGAGTAAAACTACAGTGCAATTTTAAAATCACTGGAGTATCAGTACAAACCTTTCTATTTCAGATCTCCAATGTAACCTTTGAAGAGTTTAATGGAATCCCCGGAGAGGACTCATTCAAAGTCTCACCTAATCTTACTAAACGTTTGGCAGCTGTACTCACCAAACCCTTCACTTTTGAATACACAAAAGGACAAGTAATTGACATTAAAACAGCACCTGACGTCTCCAACACTATTGTGAACATAGTGCGAGGTATTCTAAAGTTCCTGCATGTTACAATCAAAACCACCCAGCGGATTTATGAACTTGATGAGGTGGGAATTCATGGTATCTGCCACAGTGCTTATGTTATTGAAGAGAATGCAGCAGCTAAAGAATTATATGTGACCCAAAACATTGACATTAAAAACTGCCAtcaaaaagcagaaatatatCAAGGAATGGCACTGGCTCAAGAAAGTAAAATCAGCAGGGAGAGAGGTGAAAATGTGGTTGCTACTGTGAAATATGCATATACAGTGAAGTCTATGGGAAGCGTTGGTCTCATTACAAAGGCCTCTGCACATGAAAGGCACTACTTCTCTCCATTCAATGTGAAGGGTGGCAATTCTAAACTGAAAGCCATCTGGAACATTGAGCTACTCAAACAGGCCGACATTGCTGGCAAACCTCTGACAGGTCAGGTGAAAAGCAGGGGAAATATGATGTACAAGGCAGAGAAAGATCTAGGGCCAATGCCAGTTCTAATGATCAGTCTAACTAACCCAGCTCCTAAGATTGCAGACCTGATCAAACGTTTGGCTCAGGCTCACATCTACCAGGTGAACGCTGCCACGAGTGCTGACATTCTTGAGCTTATTCAACTGCTTCGTGCAACTAGTTATGAAGATCTGGAGCTTTTATGGAAACAGCTATCAGGAAATGATGAGCACAGGAGGTGGTTTCTGGATACAGTTGTTGAGGTGACAGATGGGAGGGTCCTCAAATTCCTGAAGAACAGATTCAAGGCTGGAGACATTTCTGCAAATGAGGCTGGACAGGCAATCCTGGTGGCATTCAACCATCTATCTGCTGAATCTGAATTAGTAGAAATGGCAAAGGAGTTTTTGACCATCCCATTTAGTAAGTCCCATCCTATGCTATGGAACACTGTGATCCTTTCGTATGGTTCTCTGgtatacagagtgtgtgatCGTGTGAATCCCTGCCCAGTCCTCACAGTGCAGCCGCTGCTCGATATGGCCACTAATGGACTCACTAAAGGCATTGATGAAGACATGGTGATTGCTCTGAAGGCCTTGGGAAACGCCGGACATCCATTAAGCCTTAAGACCATAATGAAGTTCCTTCCTGGATTCTCTGTCAAAGCTGATAGCCTCCCCACTAGGGTTCAGAGTGTGGCTGTGCAGTCCCTCCGGCACCTCGCCATCAGAGATCCACATAATGTCCAGGACATTGTCCTAACCATAATTGCAGAAAGGACTGTTCCTGTTGAAATAAGAATGTTAGCATCTGTGATCTTCCTGGAGACAAAGCCATCTCTAGCACTGATCTCCACACTGACTGAGCTTCTGCTCCAGGAAACAGACCTCCAAGTCGCAAGCTTCATTTACTCACAACTCAGAGGCATCGCAAGGTCACGCATCCCTGATGATCATTACCTCTCAACTGTTTGTAATATCGCAGTAAAAATACTTTCTCGGAAGCTGGGTTGGCTAAGTTATCGATTTAGTAAGGCACTACGTTTCGACTGGTTCAGAGATGACCTTTTGATGGGCACATCCAGAGTACTGTATTTGCTGAAAAATGGTACAAGTGCCATACCCACAGAAATCATTTCTAATGGAAGGCTTTACTTCATTGGAAGAGTATTTCAACTTCTTGATCTTGGTGTTCGTGCAGAGGGTCTCAAAGAGTTATTCCGAGATAGACCTGGCATTTCCAAGGATTTTGGAGTTACTGATTTTGCAGCTATCATGAAAATTCTCTCAGATTGGCAGTCCCTCCCTAAAAATAAACCTCTCTTATCAGTATTTTTGAGATTCTTTGGGCAAGAGGTCTCATTTTTTGATTTAAATCAAGATGTTGTTCAAAGAATCCTAAAGTCTGTGAGCCTTACTGCAAATAAAGACAATAAACTATGGGATCTTATTCAACAACTACAAAAAGGAATATCATGGCACTGGACAAAACCATTCCTTATGTTTGAAACCAGATTTGTTCAGCCAACCTGTCTTGGCCTCCCAGTTGAAATGAGCAAATATTATTCTACATTAGCAGCTGTTACTGTAAACGCAAAAGCTAACATCGACCCACCTCCAAAAGAAAGTTTACAGGAACTGATAGATGCAGatatttttgtggaaacagATGGATTTgctggAGTGGCAATGGATTATTTTGTCTTCCATGGGATCAATACAGATCTTTTCCAGTCTGGTGTCCAGCTGAATGGCAAGACAACCATGTCTTTGCCTTGGAAAGCTGGCTGGAAAAAGAacataaaagagaaaaattacGAGATCACTTTTCCCCCATGCAAAAAACCCACAGAGTTCTTCAAAATCAAATTCAACGTATATGCAGCATCAAGAAATATTGAAGATCCATCATTGGCTAAAATGACTCCTCTGATACCAGAGCACAGAGATCCTGAGCAAAGTTTCATCAAGAAAGACACAGATAGACACAAAGAGTATCAGGTAGAACCGTGGGAGATATATCAACCAAAATGGAAGTACTGTGCAGAATTAAGCTCTTATGGAGCTGCAGTGTGCACTGAACTGGAAGCTAAACGGGTCCAAAACCTTAAAGACCATCCTCTTTACTACTTCTTGGGATACACTCAGTTCTCATGTCAACTTGAGCCGGTCAGGTCTGTTAAGCCTGTAGAAAAGATCAAAATCCAGATCAGTGCTGGGcctcataaacacatttcacacCACAATCAAATGATGACTGTCACTCAGGAAAAATTCAAGGTACTtcataataataataataataataataataataataatagatgcTCATACCTCCATTTCAGattttaatgcatgtttataatgtaGGGTATTGATGTCACTCCTGATCCTGTGATCATGGTGAAAGTGCTGGCTCTCAGTCCTAATGTGAAGCCGCTGGGTTATGAGGCCACTGTGTATTACAcaccagacagacagaaggatgaCATAGAAATCATTATATCTGAAGCTGCTGAAGAGACGAACTGGAAAATATGTGTTGATGCCAATATTGACAAGATTCAAACAGGAGCAAAGACTCACTTCAAATGGGGAGCTGAGTGTCAGACGTATGAAGTAGCAGTAAAGGTTTCTGCCAAAGGAGAATCAAAGCCCACTATAATAGCAGAAATTAACTGGGGAGATGTTCCTGCATTAATCCAAACATTCGGCCAAAGTGTTCGAGAGTACTTCCCGGGTGCGTCCTATGCCTGGGGGTTCAGTCAGAAACATGAGAAAAATACTGAACGTGAAGTTTCAGCTACACTTCTGGCTTCTGCTCAAGGAGGATTTGATCTTGAAGTCAAAATTCCAGAGCTAACTGTGTATCGCCAGGGAATCTCCTCTCCGTTTGAAAATGTGGGAATTGAAAGTGCAGCAACATGTCCTGTATAACCACTATTTTACCTTTTCACTGTATATCACACTACACTGATTATATTTTCCAGCAATGTCACACATTCCCATTGTCACACGGTACAAAATTAAGTTCTAATGGCTGTTATTGCTAATTCGTCTATAAACTAATACAATTATTGTATGCTAAATGTTATAATTTGAATCATTTTGATGTAATT

Function

NR:

description
vitellogenin-like

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308787.1 True 4014 mRNA 0.42 26 19271952 19287643

Neighbor

gene id symbol gene type direction distance location
ttll7 ttll7 coding upstream 301405 18912318 ~ 18970547 (+)
uox uric,LOC103030682,LOC108430123 coding upstream 394876 18865130 ~ 18877076 (+)
ctbs ctbs coding upstream 419583 18848553 ~ 18852369 (+)
LOC113527405 NA coding upstream 429408 18835173 ~ 18842544 (+)
LOC113531757 NA coding upstream 477372 18786971 ~ 18794580 (+)
LOC113533188 ifi30 coding downstream 1624 19289267 ~ 19297548 (+)
mpv17l2 mpv17l2 coding downstream 12978 19300621 ~ 19309461 (+)
LOC113524462 NA coding downstream 31644 19319287 ~ 19322971 (+)
LOC113535669 pde4c coding downstream 37090 19324733 ~ 19403219 (+)
rab3ab rab3a,rab3ab,LOC107680521,LOC107665838,LOC107597148,LOC107553558 coding downstream 118043 19405686 ~ 19416175 (+)
G184340 NA non-coding upstream 190467 19081252 ~ 19081485 (+)
G184309 NA non-coding upstream 259340 19012407 ~ 19012612 (+)
G184167 NA non-coding upstream 377077 18891239 ~ 18894875 (+)
G183796 NA non-coding upstream 667030 18598718 ~ 18604922 (+)
G183797 NA non-coding upstream 674712 18593698 ~ 18597240 (+)
G184504 NA non-coding downstream 172175 19459818 ~ 19461690 (+)
G184503 NA non-coding downstream 174181 19461824 ~ 19462843 (+)
G184614 NA non-coding downstream 261020 19548663 ~ 19602639 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding downstream 373449 19661092 ~ 19664491 (+)
G184718 NA non-coding downstream 415992 19703635 ~ 19704250 (+)
adgrl4 adgrl4,LOC102783218 other upstream 1691 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 862895 18166622 ~ 18409057 (+)
G183549 NA other upstream 1475333 17795445 ~ 17796619 (+)
ect2 ect2,LOC107674529,LOC107718889 other upstream 1490138 17754176 ~ 17781814 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other upstream 1520450 17672171 ~ 17751502 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other downstream 198685 19486328 ~ 19487784 (+)
LOC113546543 NA other downstream 239234 19526877 ~ 19548212 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other downstream 244438 19532081 ~ 19554969 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 407584 19695227 ~ 19700274 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 540343 19827986 ~ 19834414 (+)

Expression


Co-expression Network