LOC117598415 (rplp2,LOC108260028,LOC103139322,LOC101168608)


Basic Information

Item Value
gene id LOC117598415
gene name rplp2,LOC108260028,LOC103139322,LOC101168608
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26564301 ~ 26566306 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308820.1
gtgtttgttgtttttgtttggttttttttgtccttaaaGGATGCGTTACGTAGCTGCCTACCTCCTGGCTGCCCTCGGGGGCAAAGAgaaccccagcagcagcgacaTCAAGAAGATCCTGGAGAGCGTCGGCGTCGAGGCTGACGAGACCCGCATGGGGAAGGTCGTGTCTGAACTCAGTGGCAAATCAGTTGAGGAGGTGATTGCTCAAGGTTACAGTAAGTTGGCCAGCGTGCCAGCTGGTGGCCTGTTAGCGGTGGCGGCATCTGGTGCTCCAGCTGCTGGAGGAGCCGCAGCTCCTGCAGCTGCAGctgaggagaagaaggaggagaagaaagaggagtCTGAAGAATCCGATGACGACATGGGATTCGGACTGTTCGACTAAACCCTGTACTCGGGACCAAAATAAAAcgtttgtcaaaaaaaaaaaa

Function

symbol description
rplp2 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within cytoplasmic translational elongation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in female organism. Orthologous to human RPLP2 (ribosomal protein lateral stalk subunit P2).

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02943 RP-LP2, RPLP2; large subunit ribosomal protein LP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308820.1 True 434 mRNA 0.53 5 26564301 26566306

Neighbor

gene id symbol gene type direction distance location
rplp2l rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873 coding upstream 47002 26514550 ~ 26517299 (+)
LOC117598404 LOC107716903 coding upstream 72528 26491117 ~ 26491773 (+)
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding upstream 135200 26421913 ~ 26429101 (+)
LOC117598406 sdhaf2,LOC107685224 coding upstream 319581 26241072 ~ 26244720 (+)
LOC113524556 sdhaf2,LOC107685224 coding upstream 336385 26223817 ~ 26227916 (+)
LOC117598444 NA non-coding upstream 2563 26560791 ~ 26561738 (+)
LOC117598392 LOC108270747,LOC108273219,LOC108273545,LOC108261282,LOC108273546,LOC108274210,LOC108261633,LOC108263642,LOC108268260,LOC108273691 non-coding upstream 52894 26445979 ~ 26511407 (+)
LOC117598394 NA non-coding upstream 127582 26429135 ~ 26436719 (+)
LOC117598395 NA non-coding upstream 142802 26420374 ~ 26421499 (+)
LOC117598393 NA non-coding upstream 143928 26419606 ~ 26420373 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other upstream 212266 26260530 ~ 26352035 (+)
polr2l polr2l other upstream 352186 26185862 ~ 26212115 (+)
G188164 NA other upstream 354291 26206942 ~ 26210010 (+)
LOC113523924 nell1 other upstream 867429 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1995658 24563400 ~ 24568643 (+)

Expression


Co-expression Network