LOC117598419 (gpr88)


Basic Information

Item Value
gene id LOC117598419
gene name gpr88
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12565218 ~ 12566601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308860.1
CTCTCTGTGAACGTGCTGCTGAGTGATGTTCATTGAGTGTTCATTTTGTTCCTCATCACTAACAGAACAGAGGATAGAGggaggatggagagaggaagcgcgcgcgcgcgcacacacacacacacacacacacacacacacacacacacacgtacgtacAAAACCGCGGCTGCAGCATCAGCACCAGGGAAGACGAATGGAGCGATAGAGCGATGCACGCGCACTCCCTTCCCTTCGTTCGGACAGTGagcggtgatgtgatgtgaacgTGAGGCTCGTGAGCGGTCATGCAGAACAGCACGGCGGTTCGGTGCGACACCGGAGCCGCGGAGCGCATCTCCATCGCCGCTCTGTTCTCCTTCATGTGCGCTCTCGGCACTGTCCTCAACCTGTTGGTCATCGGTCTGGTGTTGAGCTTCAAGAAGCTGCGCACAGCGAGCAACGCCTTCATCGTGAACGGCTGCGCGGCCGACTTGCTCGTGTGCGCCTTGTGGATGCCGCGCGAGGCGGCTGTGGCGGCGTCAGTGCCTTCCCCGCTCTACGGCGCCGCCCCCCGGGACGCGCTGCTTTTCCTCGGCGCCACCGTATCGCTCCTGTCGCACTCGCTCATCGCCGTGAACCGCTACGTGCTGATCACGAAGCCGCCCGCCGCCTACCACGCGCTCTACCAGCGGAGGCGCGCGCAGGCCATGATCGCCGCGTCGTGGCTCGTCGCGTTCGCGTGCCTGCTGCCGCCATGGCTCGCGGTGGCTCGTCACCCGGCATTCGCGTGCGGACtgatgctgctgatgctgctCTCCGAGCCCTGGGCCGCCGCCACGCTCGCGCTCACCATTCTCGGCCAGACCGCGGTTGTGACGTACTGCTACTTCAAGATCTTCCGGCGCGTGCAGATCAGCGCTAAGCGCGTGAGCGTGCTGCACTTCCAACTCGTCAACCACCTGCCGTACTCGTTCCCGAGAAAGGACAAACGGCTCGGCGTGCACGTGCTGACCGTGTGCCTGGTGTTCGTGTTGACCACCGAGCCCGTGCTGTGGACCCTGACCGCGGGCCTGTTCGCTCCCGTACCGGCGGCGTTCCGCACGTGCGCCTGGCTCCTCTTCTGCTCCGTCTTCGTGTCCGACCCGTTCCTGTACACGTGGAAGAACGAGGAGTTCAGAAAGGCTTTCAGGTCCGTCCTGAGACGGGACTTCTGGCGAGGCTCCACCGTGGCCGCTGAGCCCGTTACCGTCAGCACCGTTTCTCACGTTTTCCCCCGACAGAACAGCCGCAGGGCGTTTTTAGCAGAGCTGAGCTAAGAGgtgttttaaataatgcagCATTTAACGCGCCCTCGCTGACTTTCTCTTACAGTGTCCCCCGGTCCGGATCCCTGCTCCAAATa

Function

symbol description
gpr88 Orthologous to human GPR88 (G protein-coupled receptor 88).

GO: NA

KEGG:

id description
K08422 GPR88; G protein-coupled receptor 88

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308860.1 True 1384 mRNA 0.62 1 12565218 12566601

Neighbor

gene id symbol gene type direction distance location
rtca rtca,LOC107653637,LOC107715104,LOC107669846 coding upstream 57315 12497851 ~ 12507903 (+)
LOC113536408 LOC108271398 coding upstream 77609 12484123 ~ 12487609 (+)
trmt13 trmt13 coding upstream 85449 12473933 ~ 12479769 (+)
trnag-ucc_15 NA coding upstream 176977 12388170 ~ 12388241 (+)
sass6 sass6,LOC107756018 coding upstream 195441 12355995 ~ 12369777 (+)
LOC113536666 gpr88 coding downstream 20872 12587473 ~ 12590364 (+)
LOC117598432 NA coding downstream 35730 12602331 ~ 12605805 (+)
vcam1b vcam1 coding downstream 48473 12615074 ~ 12623948 (+)
slc30a7 slc30a7,LOC107588064 coding downstream 78585 12645186 ~ 12666010 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715 coding downstream 149983 12716584 ~ 12720429 (+)
G180246 NA non-coding upstream 67567 12496731 ~ 12497651 (+)
G180242 NA non-coding upstream 78474 12486506 ~ 12486744 (+)
G180205 NA non-coding upstream 142066 12422702 ~ 12423152 (+)
G180192 NA non-coding upstream 171727 12392887 ~ 12393491 (+)
G180144 NA non-coding upstream 378248 12181015 ~ 12186970 (+)
G180267 NA non-coding downstream 87195 12653796 ~ 12654215 (+)
G180268 NA non-coding downstream 87821 12654422 ~ 12682563 (+)
G180516 NA non-coding downstream 270267 12836868 ~ 12841282 (+)
G180534 NA non-coding downstream 284359 12850960 ~ 12851179 (+)
G180695 NA non-coding downstream 569536 13136137 ~ 13203148 (+)
cdc14ab cdc14a other upstream 3437 12512888 ~ 12561781 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 231537 12328052 ~ 12333681 (+)
G180121 NA other upstream 509469 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 1134321 11428613 ~ 11430897 (+)
G179643 NA other upstream 1403621 11160346 ~ 11161597 (+)
LOC117598398 NA other downstream 6556 12573157 ~ 12602064 (+)
ankmy1 ankmy1 other downstream 529772 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 669876 13236477 ~ 13239637 (+)
trnag-gcc_9 NA other downstream 683769 13250370 ~ 13250441 (+)
trnag-gcc_10 NA other downstream 689456 13256057 ~ 13256124 (+)

Expression


Co-expression Network