si:ch211-1a19.2


Basic Information

Item Value
gene id si:ch211-1a19.2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20719431 ~ 20721806 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308861.1
tccaaacacacactcgggATCTCTCGACATAACCACCACTACACGCCATAAGCACCTGAGTGTGCAGTGAGTGTACACTGAAGACACCCTGACAATGCGAGCGGAGACCCTGATTACAGGCTTACTTTTGCTGAGaatttcagaatttcacagCTTAAGTGAAGGACAACTGGACcctaaaataatatcatttagTCGAGGTGTTCACCTATTTGTTAAAGGTATACATGTCAAGACTGTGGCTCCCAAACTACAGATCTTGCTACCCGCTGGACTTTGGATGGAGACGTGTGACGCCGCCATACTTACATGTATCATCACAGGATTACACACCAAACCAACACACATCACTTGGAAGATTAATAAGATCTCAGTGACACAAAACCACACCACGGCTGACATCTTCATGGAGTCTGATGGCACATTCACTGCTTTAGGGCTCTTTTACCCCACACCAGGTCATGAGCTGAAGAGCGATGACTTATACAGGTGTGAGGTTGAGCAAGGAGGAATAACTTACTATGAAGAAGTATGGCCATTTCACTGTGAACAGTCACTGTGACATCTTGTGGTTTTATATGATGCATTTTGGACTCGTTGGGTTGTTATATTTACTACTTATATGGATAGTACCATATAAAGACCCTATTCAGAGTTGCCAGGTCTGTGTTTTCCTGTGGAATTAGGTTACTTTCTattctgtaaatattacattaaatatatcgATTTATTCAAGcctaataaatggatttaaaaatacatacactcTTACGTATGTTGGTGGGAAAAGACTGCTTCTATTgtatgaatgtgctgttatgtgTCAGTAAATTGATTTACTCAAAGGTATTCTTTATAATAATACctgtaataatatgtatgtgataatgtaataatataagaCCATTTGAAGACCTTTAGGATATAATGTGTAGTTTGAGTActgcttcatttaaaatatatcataaaATGTTAATGGAAATATCACAATATGCACTGACCATCCTGTTTAATATGAACACCTACAGTATATGttcacctgttcattcatgcagttatcctgcttttttcccaatcttcaactgtccagtttgggtgagcctgttgCCGCTTGACATGTTgtttgttctgagatgcttttctgttcaccacggttgtaaagagtggttatttgagttaccatcaCCTTCCTGGCAtctcgaaccagtctgaccatcaactcttctcatcaacaaggcttttcaAGCTGCAGTACTGCCACGCACTAgacatttttggtttgttttttttgcacctttgTGTGCATactctagagactgtcgtgCATGAAAATctatcagtttctgaaatactcgaatcagtctgtctggcaccaacaaacaaagtcactgagatcatacagtatttttctctcattctgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308861.1 True 1422 mRNA 0.39 3 20719431 20721806

Neighbor

gene id symbol gene type direction distance location
sid1 NA coding upstream 1529 20716531 ~ 20717902 (+)
tmem259 tmem259,LOC106613615 coding upstream 155499 20548259 ~ 20563932 (+)
slc1a8a slc1a8a,LOC108271187,LOC108437258,LOC104955947 coding upstream 538189 20171890 ~ 20181242 (+)
LOC113530255 slc39a3,LOC106613601,LOC106573935 coding upstream 549023 20163215 ~ 20170408 (+)
sgta sgta,LOC107656077 coding upstream 556386 20153984 ~ 20163045 (+)
mast3b mast3 coding downstream 84525 20806331 ~ 20839589 (+)
LOC113530200 LOC108270822,LOC108438687 coding downstream 159729 20881535 ~ 20887344 (+)
elovl1b LOC108270818,LOC108438650,LOC107656106,LOC107753833,LOC107665848,LOC107562086,LOC107723066 coding downstream 210936 20932742 ~ 20947791 (+)
chrna4b chrna4,LOC105906770,LOC103467111,LOC106941279 coding downstream 246929 20968735 ~ 20989421 (+)
hcn5 LOC108270784,LOC103027332,LOC107658208,LOC107712254,LOC107724451,LOC107668864,LOC107569239,LOC107597416 coding downstream 307588 21029394 ~ 21036574 (+)
G185206 NA non-coding upstream 11404 20705994 ~ 20708027 (+)
G185182 NA non-coding upstream 151139 20568076 ~ 20568292 (+)
G185092 NA non-coding upstream 164307 20554856 ~ 20555124 (+)
G185063 NA non-coding upstream 212751 20506477 ~ 20506680 (+)
G185037 ptbp1b,LOC107753809,LOC107593132,LOC107674525,LOC107723850 non-coding upstream 282844 20435795 ~ 20436587 (+)
G185330 LOC101478692 non-coding downstream 168441 20890247 ~ 20896461 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding downstream 242729 20964535 ~ 20967901 (+)
G185418 NA non-coding downstream 281022 21002828 ~ 21024560 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding downstream 337258 21059064 ~ 21060228 (+)
G185439 NA non-coding downstream 355369 21077175 ~ 21339714 (+)
G184979 NA other upstream 568537 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 847968 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 874193 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 885017 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 1019157 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 467442 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 530339 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 1237082 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1590636 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3486070 24207876 ~ 24210763 (+)

Expression


Co-expression Network