LOC113536476 (LOC108271228)


Basic Information

Item Value
gene id LOC113536476
gene name LOC108271228
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3283110 ~ 3352779 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308869.1
CTACTACCGGCGCATGCGCAGTTTAGCCTTTATACCAAACGGGCGCTTTGGGGCGGAGATGAACAGCTCTGCTTGCTGCAGAAAATATCTGCTAATCAACAAACCCAGTGATGCTCAGTGCAGAGGACTGACATGGCAGttttCCTCAGAGGACTGTGAGTCGATCTGCGGGAGAATGCGGGAACCGACGTCACATTCGTTCTCCATCACAGACGAATCCCCGAAGTCTTTCCGTTACCAGTGTTTGAACTATTTGCTGTAATCGCTCTGAGCTCACATATGGTGCCCACGTGCCACTGGACTGTAAATAAAGGGAGAACCTTTTTGCAATAAAGTGCCGTTTTTGCACATCGCTATTACTGATCACTGCGTCTGGTTGCGTTTTTTTATGCGAGTTTTGGTCTATAACTGGTTCGATCTTAAGGAAACATGGAGGCCAATATGGAATATATTGTGGGACAGGTGATGCAGAAAGACTTGGGACGGCGACTCCAGGTCGGACAGGAGATCATAGACTACATTCTGGATAGGCAGAAGTCACATGACCTGGAGCAGGATCAGACCATGCTGGACAGGATGGTGGACGGCCTGGCTACTTCATGGGTCAACTCGAGCAACTTCAAgGTGGCTCTTCTGGGAATGGACATTGTGTCTGCTTTAGTGACCAGATTACAAAATCGCTTTAAACCCCAAATTGGTACAGTCCTGCCCAGTTTAACAGACCGTTTAGGTGATGCCAAAGACCAAGTGAGAGACCAAGCCCAGGCTCTGCTGTTAAAAATAATGGATCAAGCTGCCAATCCACAGTACGTATGGGATCGAATGTTGGGAGGATTCAAACACAAGAACAACAGGACTAGAGAGGCTGTCTGTTTTTGCCTTATTTCCACACTAAATATATATGGAGCCCAGGGTTTAACTCTGAGCAAGATTGTTCCTCACATATGCAGTCTGTTAGGAGACCCCACAAGTCAGGTTCGAGATGGAGCTATGAACTGTCTTGTGGAGATTTACAGACATGTTGGAGAAAGAGTGCGAATGGATCTCGGGAAAAAAGGCTTGCCACAATCACGgttgaATGTCATTTTTAGCAAATTTGACGAAGTACAGCGATCAGGGAATATGGTGCTGTCTGCAGataaGAACATAGATGATGACGACTCTGTGGATGGAGGCCGTTCCTCCGCCTCCTCTAAAGGAGCAGCGTCTGTCCGCCGAACAGGATCCACGCGCAGGCCAAGCTCCGCCTCCAGCACCAAGAGCACAGGAAAAGAGGTGTCAGGTGCTGGTGCTGTGGATGAGGAAGACTTCATCCGTGCCTTTGAGGATGTGCCCACCGTACAGATTTACTCCAGCAGAGAGCTCGAGGAGtccataaataaaatcagagagGTCCTCTCAGATGAAAAACAAGACTGGGAGCACAGAGTGGCCGCGctGAAGAAGGTGCGTTCGCTGCTGCTCGCCGGGGCCACTGATCACGAAGCGTTCCTCCAACAACTGCGGCAGCTGGAAGGAGCGTTTAAGCTCTCCGCTAAAGACCTGCGCTCTCAGGTTGTCCGTGAGGCCTGCATCACGCTGGGGCATCTGTCGTCTGTGCTGGGTAACAAGTTTGACCATGGAGCCGAGTCCATCATGCCCACGTTGCTCAATCTCGTCCCCAACAGCGCTAAAGTGATGGCTACATCCGGCGTCGCAGCCATCCGCCTTATTATACGAcacacacactatCCTCGGCTTATCCCCATCATTACCAGTAACTGTACGTCCAAATCCGTGGCTGTCCGGCGACGCTGTTATGAGTTTTTAGACCTTTTACTCCAGGAGTGGCAGACGAGCTGTCTGGACAGACATGTACCTGTTCTGATGGAGACCATTAAGAAAGGAGTCCACGATGCAGACTCAGAAGCCAGATCGGTTGCCAGAAAgtgttaTTGGGGATTCCACGGCCACTTCAGTAAGGAGGCGGAGCAACTGTTTCAGGCTCTCGAGCTGACCTATCAGAAGGCTCTGCAGTTGCATCTGAAGAGCTCGGACAGTATTATGTCTCTCCCCCAATCCGATCGCTCCTCTTCCAGCTCTCAAGAGAGCCTCAAtcgTCCACAGTCTGCTAAAGCACCCGTAGGAAGCAGTGTAACCAGAAATAAAGTGGTGAGCTCTAGAGTGTCCTCTACCCCTGGCTCACTGCAGCGATCACGCAGCGATGTCGACGTCAACGCCGCCGCCACCGCCAAGTCTCGAATGCCCAAAGTACCTGCTGCTGCTCCGTTCAGCTCGGCCGGTGCACTGCCGCCTGGCTCCTACGCCTCGCTAGATGCAACTCCTGGTAATGTGGAGGGTCGTGTGCGCACACGGAGACAGAGTTCAGGCAGCAGCGTTGGAGGCGGAGCCTCTGTTACAGACAAGGGGCGGAGCCGAGCAAAAGTGGTGTCGCAATCACAACctgggaGTCGTTCCAGTTCTCCAGGGAAGCTTATTGGTCAGTCCCATGGCAAAATGTCCTCTGTGACCCCAGCAGAGAAGCGCACTAGGATCCCACGCAGTCAGGGCTGCAGCCGAGAGAGCAGCCCCGGTCGCTCTGGCCAGGCGCGGGGTAGTCGCATCCCGCGGCCCAGTATGAGTCAGGGGTGCAGTCGTGACACAAGCAGGGAGAGCAGCAGAGACACAAGTCCTGCACGGGGTTTTACTCCCCttgTGTCTCGGCGCCACTCGCGCTCCACCAGTGCCCTGACAGGCGGCGACGTGCTGCAAACAGaTCGTTTTGGGCTGATCCATCAGGCGCGGATCTCTGCCTCGGTCAACGCCATGCGCATCCTGAACACAGGCATGGAGGTGGAGGCAGCTGTCGCTGATGCTCTGCTATTAGGAGACTCCAGGAATaagCGGAGGCCCATGCGGCGCTGGTACGAGTCTGCTGGCATGTACTCGGACGATGACGCCAACAGCGACGCCTCCAGCGCCTGTTCggagctttcctatagctcgCGTAACGGAGGAGTGCCGCACTACATGCGTCAGACAGAGGACGTAGCCGAGATCCTAAACCACTGCGCCAGTTCCAACTGGTCCGAGAGGAAAGAAGGCCTGCTGGGCCTCCAGAACCTTCTGAAGAGCCAAAGAACCCTCAGccgTGTGGAGCTCAAGAGGCTGTGTGAGATTTTCACTAGGATGTTTGCCGACCCTCACAGCAAGAGAGTGTTCAGCATGTTCCTGGAAACGCTGGTGGACTTCATCGTGCTGCACAGGGAGGATTTGCAGGACTGGCTCTTTGTGCTCCTCACACAGCTGTTAAAGAAGATGGGCGCTGATCTGCTGGGCTCAGTGCAGGCCAAAGTGCAGAAAGCTCTCGATGTCACCAGGGATTCTTTTCCCTACGATCAGCAGTTCAACATCTTAATGCGCTTCATTGTCGATCAGACACAAACCCCAAACCTCAAGGTGAAGGTGGCCATTCTGAAGTATATCGAGTCTCTGGCCAGACAAATGGATCCCACTGATTTTGTGAACTCCAGTGAGACGCGACTTGCCGTCTCCCGCATCATCACCTGGACGACGGAACCCAAGAGCTCAGATGTCAGAAAGGCTGCTCAGATGGTGCTGATCTCCCTGTTCGAGCTGAACACACCAGAGTTCACAATGCTGCTGGGAGCGCTGCCTAAAACCTTCCAGGATGGAGCCACCAAACTCCTGCATAATCACCTGAAGAACTCCAGCAATGCTGCCGCCACGagtTCACCAAGCAACACAGTTGGCCGCACACCTCCAAGACTCTCTGGTTCCCGCACCAGTCCCCTGACGTCCCCTACCAACTGCTCTCATGGAGGCCTCTCACCCAGCATGCTGGAATACGACACAGAGAACATGAACTCAGAGGAGATCTACAGCTCTCTGAGAGGAGTCACTGAAGCCATTCAGAGCTTCAGCTTCCGCAGCCAGGAGGACAGCTACGAGCCAATCAAACGCGACACCAAGAAAGACGACGCGAGTGCCGTAGCGTCCTCTGCTGCAGACCCCCGGCTAGGTACAGACATGATGGAGGGGGGCCGAACGGCTCTGGACAACAAGACCTCGTTACTGAACACACCGTCCCCTCGCTCTTTCCTGGGGCCGAGGACGCGCGAGTACAATCCCTACAACTACACCGACTCCATCAGCACTTATGATAAAGCCGCTCTGAAGGAGGCAGTGTTCGATGATGATGTGGAACAGCTCCGTGATGGTCGTCGTCAAGAGTTTGGTGAAAACAAAATCACGGCTCCCAAAAGTTATTCTGCATGCCCTGCGCAGCACATGGAGCTGGTTGGTGACCTCCTGAAGGAGCTGTCCAATCACAGCGAGCGTGTGGAGGAGAGGCGGGCCGCCCTGTTGGAGCTGTTGAAGGTGACCCGCGATGACAGCGTAGCTGTATGGGAGGAGCATTTTAAAaccatgctgctgctgctccttgAGACACTGGGGGACAAAGATCACACCATCCGGGCACTGGCTTTGCGTGTTCTGAAAGAGATCCTGCGAAGTCAACCTGCACGCTTCAGGAACTATGCAGAACTGACCATTATGAAAACACTGGAGGCACACAGAGACTCCCACAAAGAGGTGGTGCGTGCTGCAGAGGAGGCCGCCTCCACCCTGGCTTCCTCCATCCACCCGGAGCAGTGCATTAAGGTGCTGTGTCCCATCATACAGACTGCAGACTACCCCATCGACCTGGCCGCCATTAAAATGCAGACCAAAGTCATCGAGCGCATTCCAGAGGAGTCCCTTTATCAGCTGCTGCCTGATATCATCCCCGGCCTGCTACAGgGATACGATAACACTGAGAGCAGCGTGCGGAAAGCCAGTGTCTTCTGCCTTGTGGCAATTTATTCTGTGATTGGAGAAGGGTTGAAGCCTCATCTTGCCCAACTGACGGGCAGCAAGATGAAACTGCTGAACCTCTACATCAAGCGAGCCCAAACTaccaacagcaacagcagcagctcctcTGACATCTCCTCCCACAGCTAAACCAACCAATCACTTTCTAAACCAATCATAACCTCACGCCCAGTCCGGTTTTACTGAAACAACTCGAAAAACCCAACCCACAATCCGAGGTCTTCTTTTAATTAAAGGACaatgatttttatttgaatCCTTAGACCCAAAACAACAATCTTATTATATAACAAGACCTGTGTTTAGAAATGGGACTCTGGTTTTGGGTCCATGTTCCAGTATGTGTGAAATGGGTCGCTTGTATTGCCGTActcctgaatgtgtgtgtaatgtatcaGGCATTAACGAGAGCAATTGTGCCTCAGTCCAGTGGAcctgtttgtctgtgttctcTTATAGGGCAATCTATTTCTATTGAAGGAGTACtcttgcgttttttttttttaatctctcattACTACATCTGCACCGTATGCGTAATGACCATGGACAACAATTTAGAAAATTGCCctttactgagaaaagaacagaaaacctgttcaTATATTACTTGCTTAAAATGAAAGACTAGgggcagtcttttttttttttgcatacaaatgttttGAACACTTTTATGAATTTACAAGTCAAAAGATTTTAAgctctaaatctgtataattcagCCTTTCAGAAACAGGACTAGTTTTTGTGAAGGAAGAATTTGTTGGTGTGATGTAGTCACTGTAACTCTAGGGAAACATGGAAGTGCTCCAGTTTCTGCCTGATGGCACAAAAATGTATGTGAAGTATcgaaagtattttttttaactgtatggCTTCACTGTTGGAACGTTGGGTAACACTACATaagaacatttttgttaaaatgtttatttctgtacTATCCTAACATGTTCATTGTTAGAGTCTACTGTTTGGAGTTTTGAATTCCTGTTATATAGACTTCTTAAGCATTAATTCACTGCACCAAGATCTGCCCTTAGATTTCTATTATAAGTCTAAAGTTTTCTCAGTACATGCAAATGTATAGGAaaactttggtgcttggacccctaccAAGAAAAAGTCTGCTGTGATTACACATACGCTACAGATTTGGTGTATAAAGATTAGATTGAAAAATTCTGGAGTATTCCTTGAAGcccttttttaaaacatcattcagtcagTGCACAGGCAAAACTATTTCCTGTACCtggttacattttaaaattaagtaATGACATTCTTGATTGGCTAAAGaaaactgaccaatcagctgCTGTATTATTGTTAGCTTGCGTCAACTATTCAGCGAAGGACGTTTTAGTAAATGTCAGGACTAGTTGAACATTCATTCCTGTGTAGGTGTAGTAATAGACCTCTTTATCACTGCTGCCTCGAATTTCTGGAAAATTCTGTTGCATGTCAATCATTTGGACCTATGGAAAATTCTCTTTTTGGGggcatttaatgttaaatatgcAAGAACAGAGATTGTATTTGTACAGTGATGGTCCTTTTGTCCAttaagaagggaaaaaagatgAAGGATAAATTTATCCCTGGTTCattctgtaaaaaaacaaacaaacacatgtaTAGAAGATTTGACTGAGCATTTCCTGTTATACCTGAATTTGCTTGACGATCATTTGCCTAGTTCAGTGACTTCCATGAAGAAGCCTGCttagaataataaagaaattttaTTGCCTTTGGGTTTGATTTTGAagaaaaagatatttaaaaggACTGTGGATGTCAGATATGCTCGATTTGAAGCAAACTTCTTTATCCGTGAACTTTGATCTTAATGATGTTCATAGACTCAAAGAAAACTTTCAGCTAAAATATTCAACTGAGCTTAAAATGCATTTGGCCATTTTCAGATTAAACTAGTGCTAGAAATGAAACTTGTATTCGCTCCAATACTATATGTTTAGTGCAAATCTAAATTTTTTAGAGCAATAATTCTAAACTGATCCAAATTGGATTTACTTTTAGCCAAACCACTTATCCAATTTTATGGTTGTGGGAAAGTCTGTGCCTGTATGGCCTTTTAAAGTTCTTCCTTACACAAAGCTGCTGTTAACTGAACCCTGGCTCTTTAGATATCACACTTTGTGCTCTTGAATGCTGAATGTTGACAGTGTGTTGATTTGTTACCTAACTATTAGGCAATGTAGTAATGTTCATAAAACATTTTCggtatgtttttggaaaatgtaaagCCGCCTCAGTTGTACAGCTGGGGACTGAAGAGGTCTCCCCAGCAAGGGAACTCACGGGATTGTAAAAAATTGACAACAATTTGCCCTGGATGTGTATTCTGTCTTTGTGTTAGTATGAAACCGGAGGAAAAAGGTGTTCGGTCATCCAGGTTACGTCTAATGTCATGCAGTAGTAAGTTCGAGCAACtggacatgattttttta

Function

GO: NA

KEGG:

id description
K16578 CLASP1_2; CLIP-associating protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308869.1 True 7358 mRNA 0.48 43 3283110 3352779

Neighbor

gene id symbol gene type direction distance location
znf143a LOC108271103 coding upstream 19812 3254156 ~ 3263298 (+)
psmd7 psmd7,LOC107584693,LOC107659147,LOC107553010 coding upstream 49170 3226648 ~ 3233940 (+)
LOC113536638 pmfbp1 coding upstream 311418 2799395 ~ 2971692 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding upstream 516454 2607743 ~ 2766656 (+)
crispld2 crispld2 coding upstream 1017355 2236458 ~ 2265755 (+)
LOC113536513 LOC108271259,LOC108411663,LOC107558370,LOC107552396,LOC107597482,LOC107657963,LOC107713003,LOC107746258 coding downstream 212335 3565114 ~ 3572263 (+)
dkk3a LOC108270596 coding downstream 560005 3912784 ~ 3922969 (+)
pkd1l2a pkd1l2,LOC108413304 coding downstream 667148 4019927 ~ 4039717 (+)
tmem41b tmem41b,LOC107730092,LOC107727087,LOC107686813,LOC107694458,LOC106562360 coding downstream 713800 4066579 ~ 4077728 (+)
dennd5a dennd5a,LOC107694459,LOC107727099,LOC107730084 coding downstream 727079 4079858 ~ 4128554 (+)
G175291 LOC108271305 non-coding upstream 44896 3237884 ~ 3238214 (+)
G175287 NA non-coding upstream 63770 3219008 ~ 3219340 (+)
G175284 NA non-coding upstream 70199 3212495 ~ 3212911 (+)
G175256 NA non-coding upstream 84590 3164243 ~ 3198520 (+)
G175370 NA non-coding downstream 33411 3386190 ~ 3386375 (+)
LOC117598422 NA non-coding downstream 79550 3432329 ~ 3434701 (+)
G175389 NA non-coding downstream 95163 3447942 ~ 3452820 (+)
G175493 NA non-coding downstream 227199 3579978 ~ 3581939 (+)
G175517 tmed3,p24b,LOC108271219,LOC107580748,LOC107750507,LOC108441851,LOC105913311 non-coding downstream 252383 3605162 ~ 3608844 (+)
G174546 NA other upstream 1204483 2078077 ~ 2078627 (+)
G174536 NA other upstream 1222827 2058970 ~ 2060283 (+)
G173898 NA other upstream 1918179 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 2460387 790374 ~ 822723 (+)
G173819 NA other upstream 2540400 742021 ~ 742710 (+)
pth1b NA other downstream 292964 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 294576 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 928465 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 1260627 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 1303826 4656605 ~ 4661136 (+)

Expression


Co-expression Network