sid1


Basic Information

Item Value
gene id sid1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20716531 ~ 20717902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308874.1
CTATCACTAGTCAGTGAGATAATAGGTGTTGTCATGCAGACAGTCCATCCCATAAGCTCACATCACACAACCAGTTTGTGGAGCTCGAAATGATTCCTAAAGTTGctctgcttttcttcttctttatcaCATTGCTCTGCTTTTTATGGCAAAACACCACAGGCATCTTAGTGAAACGGGGCCAAAATATCACCCTCATCTGCCCACTGAAGACCAAAGAGAACATCGGGATAATGACCTGGTACAAGCAGAATCCTGGTCAAGGCGTTCACTTGCTGCTGAGCTACAACTTCACTGTGCCCCCGCATGTGCGCTACGCTGAAGGAATTAACACACGCAAGTATGTGGTGTTACCCCGGAACAGACCCAGAGCCCATCCTCGGTTACGGATCCTACGTGCTGAGGAAAATGACACAGCAACGTATTACTGTGGATATTCAGAAAAAGTAGAGGAAAAGAATAATAAGCCTTGAAAAAGAGATGTGTAAAGCTctctttgtgtatgtgattaCAAAGGTCCTTAGGTtaggctgattttttttgttagccATTATTTTTTGATACCCTTTATTTTGTCTTGAGACTTAACCTTTCATCAGCCTCATATCATTATTtcctcatattattattttctttctttttttcttgcttttttaagACCAATAGACATCATTGATTTTATTGATTCATTGATCATTCATTGATTGATTGTTTTCGTTCAAAACAAACACTGTATTCTAGTGAAAAGACATTacatacagtaattaataataaagtgtgcatgtaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308874.1 True 788 mRNA 0.39 2 20716531 20717902

Neighbor

gene id symbol gene type direction distance location
tmem259 tmem259,LOC106613615 coding upstream 152599 20548259 ~ 20563932 (+)
slc1a8a slc1a8a,LOC108271187,LOC108437258,LOC104955947 coding upstream 535289 20171890 ~ 20181242 (+)
LOC113530255 slc39a3,LOC106613601,LOC106573935 coding upstream 546123 20163215 ~ 20170408 (+)
sgta sgta,LOC107656077 coding upstream 553486 20153984 ~ 20163045 (+)
zgc:113223 LOC108271437,LOC108437285,LOC103041228 coding upstream 595935 20105710 ~ 20120596 (+)
si:ch211-1a19.2 NA coding downstream 1529 20719431 ~ 20721806 (+)
mast3b mast3 coding downstream 88429 20806331 ~ 20839589 (+)
LOC113530200 LOC108270822,LOC108438687 coding downstream 163633 20881535 ~ 20887344 (+)
elovl1b LOC108270818,LOC108438650,LOC107656106,LOC107753833,LOC107665848,LOC107562086,LOC107723066 coding downstream 214840 20932742 ~ 20947791 (+)
chrna4b chrna4,LOC105906770,LOC103467111,LOC106941279 coding downstream 250833 20968735 ~ 20989421 (+)
G185206 NA non-coding upstream 8504 20705994 ~ 20708027 (+)
G185182 NA non-coding upstream 148239 20568076 ~ 20568292 (+)
G185092 NA non-coding upstream 161407 20554856 ~ 20555124 (+)
G185063 NA non-coding upstream 209851 20506477 ~ 20506680 (+)
G185037 ptbp1b,LOC107753809,LOC107593132,LOC107674525,LOC107723850 non-coding upstream 279944 20435795 ~ 20436587 (+)
G185330 LOC101478692 non-coding downstream 172345 20890247 ~ 20896461 (+)
G185381 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 non-coding downstream 246633 20964535 ~ 20967901 (+)
G185418 NA non-coding downstream 284926 21002828 ~ 21024560 (+)
G185436 rbbp7,LOC105893332,LOC103023991 non-coding downstream 341162 21059064 ~ 21060228 (+)
G185439 NA non-coding downstream 359273 21077175 ~ 21339714 (+)
G184979 NA other upstream 565637 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 845068 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 871293 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 882117 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 1016257 19695227 ~ 19700274 (+)
wipf2a LOC108270800 other downstream 471346 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 534243 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 1240986 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 1594540 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 3489974 24207876 ~ 24210763 (+)

Expression


Co-expression Network