LOC117598428 (LOC108270908)


Basic Information

Item Value
gene id LOC117598428
gene name LOC108270908
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5549431 ~ 5562727 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308888.1
ATGCCTTTCCTAAGAAAACTCTGCATTTATTGTTGGATTTCAGGGACTTTTCTCTTATCCGCACATGTCGTGTCCCTGAAGACGTCTCGAGATGTATCGGATGACCAAAATTCCAACAAAGCCGTTTTTCGGGACGTGGTGTATGAATTTGTCGCAAAGCCACACTCATGGGGACAGGCGAGTGAAGCCTGCGAGATTCGAGAAGGGAAACTTCTGAAGTATCTGGACTGTGAAATCAAGGATTTCTTTTCCAAAGTGTTCAAGGACCTCCAGACCGCGGCTCCAGGCTGGTGGATCAGTGAGGGTTTGACGGGATATTATGAAGAATGTGTTATTCAGGCAATGCCCACTGCTCAACCTGCTGATAGACCTAGTCCACATTTTTGCACCTACGTGACAATGGATCCATTCCAGCTGGTGACCACGCCCTACTGCAATATGACCTTGGGTTACCTGTGTActcaggATTCACAagcagatgaagatgaaaataaaCGAGTGCAGAGGAGCATTCGGGTCCGGAGGAGCACAAATCCCATAAtaAGTGAATGGTTACAGCAAATGGATTCATCAACATCAGACTTGGTAGCTGTCCTCACgAAGCTATACCTAAATGATATACTAAAAGCCCTAAAGGCGCTTAGGGAAATAGATGACTCTAGGAAGGACCTCACTATTAATTGTACTGGAGGCCTCATTTTGCACACCGTCGAGCAGTGTGAACCAGATGACAGCCCAGAGCATCTTGAGGAGCTGCTTATTCTGGCTACCTTGATTTATCAGCAGTTAAATATACTGACACAGCAAAACACCAACACAGTATACGTCTGGGATTTTTTATCAGGCACGCTTTTTACAACCAGacAGGAGCCAAAAAATCTGGACACCATGGTGATTGGGAATATGGAGCAGGGTGTTTTCCACTTTCCCTCTTTTGATGCGTTAAAGTCACAGCTGCCAGCTGCCCCTGTCGATGTTCAGATGTTCAGTTATAAAACTAACCCACTGAGTGAACAATCAAACTTTAGCATCACCGGCACCGTTTGCAGCCTGTCACTCTCGGCGGATTCGTCTAATATCAAACTCAGTAATCTCTCAAGCTTCATCGAGATATTTCTGCCACGTCCCGAAGCCCCTGAGCCAGAACTTTCAAGCGTGTCCTTAAAATATGGGTTTGCTCTCATCACATCCTTCAACATCACTGATCCAAACGCAACTGTCATTGTTACTGCAATACCAGATCAAAATGTCTCTCTTCAGTTGCTCCTGTCTCCCACTTACCAGTCAAACAATCACAGCCAGCGCACCATCCTGACTGGCCATGCCGATAATTATCAGTGGATCATCCACCCAGAGATGATGAACTCTACTAACGGGACCATGTATGTGAACGTAACACTGTTTAACTACACGTCATCCCGTCCAGTGACAGTCAGTATCTCACTCATGAActttaagtgtgtgtactgGGATGTAAACCAAAAAGATTGGAGCAGAGATGGCTGCTGGGTTGGTCCTAAAACAGTACCCAAAATGACTCACTGCTTATGTAACCATAACACTTTCTACGGGAGCTCCTTCTTTGTGATGCCCAATCCAATAGACCTGTCACAAACAGCTGCCCTTTTCGCCACCATCAATCAAAATTACGTGGTTGTCTCTGTCCTATGTGGTTTCTTTTTCCTCTATCTGATCCTTGTGTTATGGGCGTGGTATGCTGACAAAAAAGCCCTGAGAACGCGCAAGGTGATGTTGCTGGAGGACAATCATCCATGTGCTCATTATAACTACCTGCTGAATATACAGACAGGAAACCGGAAGCGAGCAGGAACCTCAGCcaagGTTATGATGACCCTAGAAGGCACCGATGGCGAGAGCGACATCCATCACCTAGCTTACCCAGATCAACCTGTGTTTGAAAAAGGAGGAGTGGACATGTTCATGCTCAGCACTCCATTCTCTCTGGGAGAGCTGCAGAACATCAAACTGTGGCATGACAACACAGGAGGAGATCCAGACTGGTACTTGCAGAAGGTGACAGTGCAGGACTTGCAGACTCGTCAGGTCTGGCACTTCCTGTGCAACACCTGGCTAAAGGGCAACGGCGACACACCTTGTAAAAGAACCTTCAATCCAGCAAAGAAGAACGAGATCACCAGTTTTGGCAATTTATTCCATGCTCGGACATCCACCGGGTTCCGAGACGAGCACATTTGGATTTCTATTGTGAATCCTCCACGCCACAGCCCCTTCACCCGAGTGCAGCGAGTCTCCTGCTGTATGTGCCTGCTGCTGTGCACCATGGTCATCAACATCATGTTCTGGAACATTCCCAAAGATGGAGAGTCTCCTGTCATCATTAAGCTAGGATCCTTTGAACTCACCTGGCAGCAGATCATGGTTGCAGTGGAAAGCGCCCTGCTCATGTTCCCGATTAACATCCTCATTGTCACCATATTCCGCAGTATACAACCACGCGTTAAAAAAGATGACAAGGACATGCCCAAGACCAACAAAAGCGACAAATCTTCCGTTACTTCCATGCAGACTATCCTCAAGGACACACAGGATATTGTAAATCTCCTCAGCAAAAGCCCCAAAAATTGCGTGATTGCATTGCAGGAAAATCTTGAGACCACCGCAGATCTGTTCGCTGCACTTAATCAAATGCATGATGTCATCGTGAATATACAAGGCCAGACTGTCGGGGATCAGCACTGGGCCCACTGCAGCCGTTTTGTCTTTCACACTTTATGCCATCTGTCAACATTACTGGATCGCGCCGGAGAGAAAGTGTTTCCTCACCCCGAGGACCTCGATCTGGCTAAGaacacagtgaacatgatgCTGAAGAAGGCGGAGGTGTTGACCAGCACTCATCCAGTGCAGAGctttgTGCCTGTgcaagagaagaagaaaaaatccGGCTGCAAGCTGCCCTGGTGGTTTGTCTTTGTCGGCTGGGGTCTTCTCATTACCATAAGCGGCATCTCGACCTTCTTCACCTTGCTGTACGGCTTTCAGTATGGGAAGGAGTCATCCATTCGATGGGTCATCACCCTGACGCTGTCCATGTTCCAGAGCATCTTCATCATCCAACCTCTGAAGGTGAACGTGAACGCTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308888.1 True 3126 mRNA 0.47 19 5549431 5562727

Neighbor

gene id symbol gene type direction distance location
LOC113536777 LOC108270592,LOC103040452,LOC108435886 coding upstream 25001 5522248 ~ 5524430 (+)
sult5a1 st2b1 coding upstream 52978 5489015 ~ 5496453 (+)
csnk2a2a csnk2a2a,LOC108412781,LOC108270938,LOC107730160,LOC107663022,LOC107712622 coding upstream 141984 5399124 ~ 5407447 (+)
LOC113536403 LOC108270935,LOC108412779,LOC103045764,LOC100149007,LOC107686837,LOC107600349,LOC107712618,LOC107730114 coding upstream 150530 5394017 ~ 5398901 (+)
si:ch211-146m13.3 si:ch211-146m13.3,LOC108270934,LOC108412786,LOC107663021,LOC107686840,LOC107561441,LOC107730175,LOC107600348,LOC107712612 coding upstream 160852 5379911 ~ 5388579 (+)
gemin6 gemin6 coding downstream 145662 5708389 ~ 5710341 (+)
rfc4 rfc4 coding downstream 201080 5763807 ~ 5772916 (+)
ankrd13c ankrd13c,LOC102791519,LOC106573859 coding downstream 225720 5788447 ~ 5828396 (+)
sirt7 sirt7 coding downstream 282732 5845459 ~ 5853826 (+)
zgc:194981 NA coding downstream 298703 5861430 ~ 5865960 (+)
G176406 LOC108270509 non-coding upstream 39577 5505770 ~ 5509854 (+)
G176384 NA non-coding upstream 125336 5420887 ~ 5424095 (+)
G176056 myo9a non-coding upstream 588905 4912078 ~ 4960526 (+)
G176041 NA non-coding upstream 656074 4893142 ~ 4893357 (+)
G176008 NA non-coding upstream 711060 4813512 ~ 4838371 (+)
G176430 NA non-coding downstream 39929 5602656 ~ 5614328 (+)
G176469 NA non-coding downstream 114479 5677206 ~ 5690860 (+)
G176596 NA non-coding downstream 251868 5814595 ~ 5815106 (+)
G176608 NA non-coding downstream 292798 5855525 ~ 5857242 (+)
G176700 NA non-coding downstream 389087 5951814 ~ 5952155 (+)
G175977 pacsin3 other upstream 888295 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 904233 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 1250064 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 1891141 3647355 ~ 3658290 (+)
pth1b NA other upstream 1902316 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 1559658 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 1705104 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 2680628 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 2682225 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 2685289 8248016 ~ 8248088 (+)

Expression


Co-expression Network