LOC117598431


Basic Information

Item Value
gene id LOC117598431
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11520119 ~ 11521620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308896.1
ATGACTCATCAGCATCTGAAGTTCTATCAGCATCTGAACTGTATCAACACTATCCATTACAGCATCACTGTTTACCCCCCAGAATTATCTACAGACCACACATCAGCATCTGAAGTTTTATCGGCATCTGTAACTCCAGAAACTTTATCAACACCATGGGTTACACCATCACCCTATACCTCACCAGAATCCTTCTCGGATCAGTCATCAACATCTAAATCTCCACAAACGTCAGCAGCACAAACAGTTACAGCATCACCATCTACTCCCCAAGAATCATCAACAGATCAGTCATCAACACCTGAATCTGGAAAAACTTCAGCAGCACAAGCAGTTACAGGATCACCACCTACTTCCCTACAATCATCTACAGATCACTCATCAACAACTGAATTGCCAGGCACTTCATCAACACAAGCAGTTACAGCATCACCATCTACTTCACCAGAATCATCAACAGATCACTCATCAGCATCTGAAGTTTTATCAGCAACTGTAACTCCAGGAACCTTATCAACACCACTAGTTACACAATCCGCTACAGATCACTTATCAGCATCTAAATCTCCACAAACGTCAGCAGCACAAACAGTTACAGCGTCACCATCTACTTTCTCAGAATTATCTACAGATCACTCATCAACAACTGAATCTCCAGGAACTTTATCAACACTATCCATTACAGAATCACTGTTTATCTCCCCAGAATTATCTACAGACCAGACATCAGCATCTGAAGTTTTATCAGCATCTGTAACTCCAGAAACTTTATCAACACCATGGGTTACACCATCACCCTATACTTCACCAGAATCCTCTACAGATCACTCAACATCTGACTCTCCAGAAACATCAACAGAAATGATTACAGGATCACCATATACTTCCCCAGAATCATCTTTAGGAACACAAACAGTTACAGCATCACCATCTATTTTCCCTGAAACATCAACAGATCACTCATCAGCATCTGAAGTTCTATCAGCATCTGTAACTCCAGGAACCTTATCAACACCACTAGTTACACAATCCTCTACAGATCAGTCATCAGCATCTAAATCTCCACAAACGCGTCAGCCACACAAACAGTTACAGCGTCACCATCTACTTTCTCAGAATTATCTACAGATCACACATCAGCAACTGAATCTCCAGGAACTAAACTTTATCAACACCATGGGTTACACCATCACCCTATACCTCACCAGAATCCTTCTCGGATCAGTCATCAACATCTAA

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308896.1 True 1239 mRNA 0.41 3 11520119 11521620

Neighbor

gene id symbol gene type direction distance location
LOC113536618 LOC108271381 coding downstream 38610 11478608 ~ 11481509 (-)
psmd1 psmd1 coding downstream 44151 11428605 ~ 11475968 (-)
LOC113536755 acap2 coding downstream 282310 11196039 ~ 11237809 (-)
polr2h polr2h coding downstream 406530 11110545 ~ 11113589 (-)
mfsd8l1 LOC108271204 coding downstream 411554 11096127 ~ 11108565 (-)
sox2 sox2 coding upstream 221328 11742948 ~ 11745835 (-)
mccc1 mccc1,LOC106613934 coding upstream 436658 11958278 ~ 11973216 (-)
LOC113536502 NA coding upstream 452061 11973681 ~ 11980660 (-)
s1pr4 LOC108270882 coding upstream 541375 12062995 ~ 12065799 (-)
enc3 enc3,LOC108270871,LOC108430247,LOC107593050,LOC107731329,LOC107755983,LOC107695631,LOC105900972 coding upstream 789986 12311606 ~ 12324367 (-)
G179727 NA non-coding downstream 324446 11194437 ~ 11195673 (-)
G179487 NA non-coding downstream 940659 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 944087 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 956667 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 1004918 10514696 ~ 10515201 (-)
G179827 ttc14 non-coding upstream 37299 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 206657 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 474550 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 531661 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 551649 12073269 ~ 12074531 (-)
LOC113536577 NA other downstream 1725 11510846 ~ 11518394 (-)
LOC117598430 NA other downstream 16157 11491707 ~ 11503962 (-)
G179803 ncl other downstream 100073 11409092 ~ 11420046 (-)
nppc anfc4 other downstream 273809 11243847 ~ 11246310 (-)
LOC113536673 NA other downstream 825000 10605511 ~ 10695119 (-)
LOC117598402 NA other upstream 6337 11527957 ~ 11532033 (-)
fxr1 fxr1 other upstream 341369 11862989 ~ 11889149 (-)
ncln ncln other upstream 498792 12020412 ~ 12032006 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other upstream 1195741 12717361 ~ 12720476 (-)
rc3h1a rc3h1,LOC108429496 other upstream 1230458 12752078 ~ 12782535 (-)

Expression


Co-expression Network