LOC117598432


Basic Information

Item Value
gene id LOC117598432
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12602331 ~ 12605805 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308897.1
ATGGCATTGAATCCATTCAGTCCTACTACACTTTTACACCACAAACCAACGAAACTGACATGGAGAGTCAATAACTGTCGAGCCACACTCAGTCTTGATGGCTTGCCACCAGAGGAGAGAACCAGAGAGATCACCGTGTCCATGGCTGTCCTTTcTTTTCCAAAAGTTCCAGTCATCTCTGGACATGACAGCTTGGTGTTAGGGAAGGAGAACAGCCTGACCTGTGAGGTTTCAGATGTTTATCCAGCAGAACATATGACAGTGGAATGGCTGAGGGGAGGAAAAGTGGTCCACACACAGGAAGGAGAATATGGCATTGAATCCATTCAGTCCTACTACACTTTTACACCACAAACCAACGACGATGGAGAGTCAATAACGTGTCGAGCCACACTCAGTCTTGATGGCTTGCCACCAGAGGAGAGAACTAGAGAGACCACCGTGACCATGGCTGTCCTTTCACCCCCAAGGAACACCAccatgaaaaacacaaaagatgATGGAAATGTGTATACAGCCCTGTTACGAAGACTCAATTCCATTGACGTTATAATTCCAGTCATTGGTATGGGAGTTCTGGCTTCAGTAGCCAGCTCACTGAACTGTGTAAGGAAAGCAGCAAGGAAGGGCTTGTCTTGTCTGAACAAGGGCACACCAGAAACTGTGTAAACTACATGGACAtaaacagaatttacataaactgaATCATTCAGTCTCCTACACTGTATCATACACCACTGAACTGACACAGAGTCTACTGAACCTAAACAGAATCTATTAAACTGAAATAGAGTCCACTCAACTAGATCAGTTGCTCCAGTAAACTGAATAGAACTGAATCTCACATTGCTGAAATGAATCACACTCCAGTAAACAGATTCTGCTTAACTGAAACAGAGTTTGCTGAGCTGAATTAGACCCTGGTGAACTGAATCACACTCTGCTGATCTGAATCACACGCCACTAAATAGATTCTGTTAAACTGAAAGGTATGGTCTGCAAAGGGCTTACGTAGCATGTCTGAGATCTcactgttgaaaggtatcgatcaggagagggatacaaaagaatttccaaaacattagatgtaccatggaacaccatgaagaccatcatcaacaagtggagaaaatggggcaccacagtgacattaccaagaacaggacgtccctccaaagtAGACAAAATTAAAAGATGAGAACTTATTAGGgaagctgccaagagacctatggcaacattaaagtaGCTGCAGGAATGTCTGGCAAGTACTgttcactccctgcatgtgtcagcaatctcttgtattcttcgcATGTCTGTagtatggggtagggtggctagacgaaAGTCCTTTCTcataaaaaaacatccaagcccacctaaatcaccccacaccatgtggcaaaatgtgttattgtcaGCTGGGACCAAGGTACAACCTTTTGGCATAATTCATAAAGACATGCAAAAACAAGGCATCtcatcacccaaagaacaccatatcaaaagtgaagcatggtggtggcagcatcatgcatcatcgggctgcttctcttcagctcgGACTGGGACTGTAGTCCAGATAAAGGGTTATAGGCCTCttttagacagctgaagatttcaCCTTCTAGCACAATAGCaatccaaagcacaaatccaagtcaacaaaggaatggcttcagaaaaagaagatcaacattttgTAATGGctcagtcagagcccagatctaaatcttATGAAAACACAACCCGTGGAATGACATGAAATGGACTGTACACAGGAGATCCcttcacaatttgatagatctggaacatttttgcaaggaaaaGCACATCTTGGAGTCTTCCAATGTACATATTCTAAATTGGAAGACTTTTACCCCGAAAGACTGATTGCTGTATTAATAGaaaatgttctttaacaaaatattagttaaggcatgtacacacttatgcaaccaggttattgaaTGCTTTTTCCTTTTACATTATTCCACTACACTTTTCCTTCCTTTTACACTAagacatttctatttttttttacttgaattttgttgtttGCTATATTACAATAAAGGTGGAAGATGATGACATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308897.1 True 2096 mRNA 0.42 3 12602331 12605805

Neighbor

gene id symbol gene type direction distance location
LOC113536666 gpr88 coding upstream 11967 12587473 ~ 12590364 (+)
LOC117598419 gpr88 coding upstream 35730 12565218 ~ 12566601 (+)
rtca rtca,LOC107653637,LOC107715104,LOC107669846 coding upstream 94428 12497851 ~ 12507903 (+)
LOC113536408 LOC108271398 coding upstream 114722 12484123 ~ 12487609 (+)
trmt13 trmt13 coding upstream 122562 12473933 ~ 12479769 (+)
vcam1b vcam1 coding downstream 9269 12615074 ~ 12623948 (+)
slc30a7 slc30a7,LOC107588064 coding downstream 39381 12645186 ~ 12666010 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715 coding downstream 110779 12716584 ~ 12720429 (+)
zbtb37 zbtb37 coding downstream 117052 12722857 ~ 12732692 (+)
eps15l1a eps15l1 coding downstream 198509 12804314 ~ 12837848 (+)
G180246 NA non-coding upstream 104680 12496731 ~ 12497651 (+)
G180242 NA non-coding upstream 115587 12486506 ~ 12486744 (+)
G180205 NA non-coding upstream 179179 12422702 ~ 12423152 (+)
G180192 NA non-coding upstream 208840 12392887 ~ 12393491 (+)
G180144 NA non-coding upstream 415361 12181015 ~ 12186970 (+)
G180267 NA non-coding downstream 47991 12653796 ~ 12654215 (+)
G180268 NA non-coding downstream 48617 12654422 ~ 12682563 (+)
G180516 NA non-coding downstream 231063 12836868 ~ 12841282 (+)
G180534 NA non-coding downstream 245155 12850960 ~ 12851179 (+)
G180695 NA non-coding downstream 530332 13136137 ~ 13203148 (+)
LOC117598398 NA other upstream 267 12573157 ~ 12602064 (+)
cdc14ab cdc14a other upstream 40550 12512888 ~ 12561781 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 268650 12328052 ~ 12333681 (+)
G180121 NA other upstream 546582 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 1171434 11428613 ~ 11430897 (+)
ankmy1 ankmy1 other downstream 490568 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 630672 13236477 ~ 13239637 (+)
trnag-gcc_9 NA other downstream 644565 13250370 ~ 13250441 (+)
trnag-gcc_10 NA other downstream 650252 13256057 ~ 13256124 (+)
trnag-gcc_11 NA other downstream 652203 13258008 ~ 13258076 (+)

Expression


Co-expression Network