lmnl3 (LOC108270534,LOC108439631)


Basic Information

Item Value
gene id lmnl3
gene name LOC108270534,LOC108439631
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10460121 ~ 10479323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308924.1
GCCTGCGTTCATGTGGTGTGACGTCACGGCGCTTATTGGGTGCCATCAATTCTTTAGCAGCTGTGCGCGATAAAAGTGACATACgcggaaaaaaaacagcaacatgaGCAGGGTTTTATTGGATTCATAGCTCAGAAATTAAGTTTATAGTGAGCAGTTTTGCTCCGGGTTTTTAACTGCGCTGTATAACAGAGACATGGCCCATGCCAAGAGCCTGCGTCGCGTTTGTTAATGTTGCGGTTTGGGAGTTTGTCTTAgcagaaaactgctttttttagAGGTGTAGCGCTCAAAGAGCACGTAgatacctgtgtgtgtatttatgtgtgtgtgagtgtgtggggaAGAAAGCCTGAGAGAATAACAAGCAGCCATGATAACGTCAACTCCTGAGACTTCAGCCGGCCGCCCTTCGCGCTCCGGGAGACGGAGCGCCGCCACCGCCGCCGCCGCGGCCCCCGGAGCCTCTCCGTCCTCGGTGAGTCCGACGCGCCTGAGCCGCCTGCAGGAGAAGGAGGACCTGCGACAGCTCAATGACCGCCTCGCCAACTACATCGAGCGTGTGCGCCAGCTCGAGAATGAGAAATCTTCCATGCGGCTCCTTctggaggagaaagaggaaacCTCGACCCGGGAGCTGAAGAATGTGCGCCTGCTGTATGAAACGGAGCTGGCCGACGCTAGAAAAACTCTGGATAACACAGCCAATGAGAGAGCCAGGCTTCAGATAGAGTACAGCCAACTGTGTGAAGACCACCGCAAGCTAGTGGCCAGGAATAACAAGAAAGAGGCTGAGCTGGCCAACGCAGTGGAGCGCTGGAGGAATCTCGAAGCTGCCCTGAACTCCAAAGAGGCAGACTATGCTAATTTACTAGCAACTAACCGTAGACTGGAAAATGAAGTTGCAGACCTCAGAGCACAAGTGGATAATCTGGATGCAGCCTTGCAGAACGCCAAAGCTCAGGTTAATTCAGAGATGCTTCGTCGAGTCGACGCAGAGAACCAGATGCAGACCCTCCACGAGCAGATGGAATTTCAGAAGCAGCTCAATGAACAGGAAGTGCGGGAGATGCGGAGTCGGTACGAGAGCCGTCTGGTGGAGGTGGATTCAGGAAGGCAGAAGGAGTTTGAGAGCAAGTTAGCAGATGCCATGCAGCAGCTACGACAAGAGCACGAATCCCAGATCCTGCAGTATAAAGAGGACCTGGAGCGCACCTTTAATGCTAAGTTGGAAAATGCCAAGCAGGTGGCCTTGAAGAACAGTGATTATGCCACCTCTACCAGAGAAGAGCTGGAAGGAACCAGAATAAAAGTGGAGTCCCAGTCCAAGCAGATAAACAGCCTGCAGAAACAGaaccgTGAGCTGGAGGCACGAGTGCAGGACTTGGAGCGAGCTCTGGACCGCGAGAGGCAGCTCAGCCAACAGCGGCTCTCCCAGAAGGAGCAGGAGATGGCTGACATGAGGCAGCAGATGCAGGCACAGCTGGAGGAGTACCAGAGTCTGCTGGACATCAAACTCATGCTGGACATGGAAATCAACGCCTACAGGAAGATGCTGGAGGGAGAGGAGCAACGACTCAATCTTTCCCCAAGTCCCTCTCAGCATGCGCCCATCTCCCGCACACATGTCCACGCCACACGCAAAGCCTGGGGAAAGAAACGGAAACACGAGGGCGGGACAGGTCTCTCTCCGAGTTACAAAGTGTCCCAGCACTCTTCTGCTCGTGGCTGTGTGTCCATTGATGAGGTGGACCTCGACGGAAACTTCGTAAGGCTCAAGAACAACTCTGACATGGATCAGCCAATAGGAGGCTGGACAGTGAGAAGAAGTCAACCAGGAGGACCTGACATCATCTTTAAGATCCCTTCATCCTACGTTCTGGCTGCTGGACAAACGCTGACGATCTGGTCTGCAGGTGCTCGAGTGGAGCAGAAACCTCCTACTGATCTGGTGCTGAGGAGCCCAAAGACGTGGGGAGCTGTGAGTGATGTCCGGGTGTCTCTTCTCAATCTGTACAGTGAAGAGACAGCAGTGGTTCGTCTGCAGGGTCGAGCAGATGGAGATTCTGAAGAGGATCTGGACGAAGAGAGCAGCGTTGGGTCCGAGATTCACCTCCGCCGCCAGGGTTATGCACCAAGTCAGGAGGCCAGCTGTGCAGTAATGTAACTGCCATGTACCCAGATGTCTACACTGGAGCGTGATGTAGACATACCACCCCAAATCTTTTACACAAAGTCTTTCATATATGTAACCACCATGCCCTAAAATAGTTTCTCAGAGCAAAATGTGTATTTCTTATTCCAGGGCCCATGTGTAAGACCCGAGAAGGGCCGCAAAGCCCTCGTCTCATTCACGTGATCACATTCAATGATATGAGATACAGGGCTAAGATTAAATCAAGACCAGCAATAGTAGTCTATACATTTTCTTCCCTGGTCTTTCCAAGGTCTGTTCCTCCCTGTTTATTGTGCCTTGGCTTGCCATATTATCCTCTGTTTTGCACTTGCTATACTTGCACATTACATGTTAAGCTAATGGAATGGTTTGTACAAGTAGCCAGATGTGGTGAAAAGTTCCTGAGGACTAACATGGTAGACAGCTGTTGAACATGTAGCATTACTGGAATTTTGTTTTGAGAAATAAACTTTTCCTTAGATTTGTATGTAAATTACTGTGACCCTGTATATTTTGTCACATGTTTATTggatattaatttatttttctctcataaTTTAATCAGCTGACAGAAAACCATGATCAGAATGTGTCAGAATGAGCTTTTTGCATATACGTAATCTGTTTTCCTGACATTTGAAGCGGAACATGCCTGAACACCTAACCATCTATAGACCTCAACTGTCATTGTTgcctatttgtttatttcccttaataatacacttttatacatagaaatttaataaagaatatgcTGTGA
>XM_034308925.1
GCCTGCGTTCATGTGGTGTGACGTCACGGCGCTTATTGGGTGCCATCAATTCTTTAGCAGCTGTGCGCGATAAAAGTGACATACgcggaaaaaaaacagcaacatgaGCAGGGTTTTATTGGATTCATAGCTCAGAAATTAAGTTTATAGTGAGCAGTTTTGCTCCGGGTTTTTAACTGCGCTGTATAACAGAGACATGGCCCATGCCAAGAGCCTGCGTCGCGTTTGTTAATGTTGCGGTTTGGGAGTTTGTCTTAgcagaaaactgctttttttagAGGTGTAGCGCTCAAAGAGCACGTAgatacctgtgtgtgtatttatgtgtgtgtgagtgtgtggggaAGAAAGCCTGAGAGAATAACAAGCAGCCATGATAACGTCAACTCCTGAGACTTCAGCCGGCCGCCCTTCGCGCTCCGGGAGACGGAGCGCCGCCACCGCCGCCGCCGCGGCCCCCGGAGCCTCTCCGTCCTCGGTGAGTCCGACGCGCCTGAGCCGCCTGCAGGAGAAGGAGGACCTGCGACAGCTCAATGACCGCCTCGCCAACTACATCGAGCGTGTGCGCCAGCTCGAGAATGAGAAATCTTCCATGCGGCTCCTTctggaggagaaagaggaaacCTCGACCCGGGAGCTGAAGAATGTGCGCCTGCTGTATGAAACGGAGCTGGCCGACGCTAGAAAAACTCTGGATAACACAGCCAATGAGAGAGCCAGGCTTCAGATAGAGTACAGCCAACTGTGTGAAGACCACCGCAAGCTAGTGGCCAGGAATAACAAGAAAGAGGCTGAGCTGGCCAACGCAGTGGAGCGCTGGAGGAATCTCGAAGCTGCCCTGAACTCCAAAGAGGCAGACTATGCTAATTTACTAGCAACTAACCGTAGACTGGAAAATGAAGTTGCAGACCTCAGAGCACAAGTGGATAATCTGGATGCAGCCTTGCAGAACGCCAAAGCTCAGGTTAATTCAGAGATGCTTCGTCGAGTCGACGCAGAGAACCAGATGCAGACCCTCCACGAGCAGATGGAATTTCAGAAGCAGCTCAATGAACAGGAAGTGCGGGAGATGCGGAGTCGGTACGAGAGCCGTCTGGTGGAGGTGGATTCAGGAAGGCAGAAGGAGTTTGAGAGCAAGTTAGCAGATGCCATGCAGCAGCTACGACAAGAGCACGAATCCCAGATCCTGCAGTATAAAGAGGACCTGGAGCGCACCTTTAATGCTAAGTTGGAAAATGCCAAGCAGGTGGCCTTGAAGAACAGTGATTATGCCACCTCTACCAGAGAAGAGCTGGAAGGAACCAGAATAAAAGTGGAGTCCCAGTCCAAGCAGATAAACAGCCTGCAGAAACAGaaccgTGAGCTGGAGGCACGAGTGCAGGACTTGGAGCGAGCTCTGGACCGCGAGAGGCAGCTCAGCCAACAGCGGCTCTCCCAGAAGGAGCAGGAGATGGCTGACATGAGGCAGCAGATGCAGGCACAGCTGGAGGAGTACCAGAGTCTGCTGGACATCAAACTCATGCTGGACATGGAAATCAACGCCTACAGGAAGATGCTGGAGGGAGAGGAGCAACGACTCAATCTTTCCCCAAGTCCCTCTCAGCATGCGCCCATCTCCCGCACACATGTCCACGCCACACGCAAAGCCTGGGGAAAGAAACGGAAACACGAGGGCGGGACAGGTCTCTCTCCGAGTTACAAAGTGTCCCAGCACTCTTCTGCTCGTGGCTGTGTGTCCATTGATGAGGTGGACCTCGACGGAAACTTCGTAAGGCTCAAGAACAACTCTGACATGGATCAGCCAATAGGAGGCTGGACAGTGAGAAGAAGTCAACCAGGAGGACCTGACATCATCTTTAAGATCCCTTCATCCTACGTTCTGGCTGCTGGACAAACGCTGACGATCTGGTCTGCAGGTGCTCGAGTGGAGCAGAAACCTCCTACTGATCTGGTGCTGAGGAGCCCAAAGACGTGGGGAGCTGTGAGTGATGTCCGGGTGTCTCTTCTCAATCTGTACAGTGAAGAGACAGCAGTGGTTCGTCTGCAGGGTCGAGCAGATGGAGATTCTGAAGAGGATCTGGACGAAGAGAGCAGCGTTGGGTCCGAGATTCACCTCCGCCGCCAGgccaaaagaaagaaaaagaaatgttgtGCTCTTTCCTGACCTGTCCCAGCACAGTAGGGTTATGCACCAAGTCAGGAGGCCAGCTGTGCAGTAATGTAACTGCCATGTACCCAGATGTCTACACTGGAGCGTGATGTAGACATACCACCCCAAATCTTTTACACAAAGTCTTTCATATATGTAACCACCATGCCCTAAAATAGTTTCTCAGAGCAAAATGTGTATTTCTTATTCCAGGGCCCATGTGTAAGACCCGAGAAGGGCCGCAAAGCCCTCGTCTCATTCACGTGATCACATTCAATGATATGAGATACAGGGCTAAGATTAAATCAAGACCAGCAATAGTAGTCTATACATTTTCTTCCCTGGTCTTTCCAAGGTCTGTTCCTCCCTGTTTATTGTGCCTTGGCTTGCCATATTATCCTCTGTTTTGCACTTGCTATACTTGCACATTACATGTTAAGCTAATGGAATGGTTTGTACAAGTAGCCAGATGTGGTGAAAAGTTCCTGAGGACTAACATGGTAGACAGCTGTTGAACATGTAGCATTACTGGAATTTTGTTTTGAGAAATAAACTTTTCCTTAGATTTGTATGTAAATTACTGTGACCCTGTATATTTTGTCACATGTTTATTggatattaatttatttttctctcataaTTTAATCAGCTGACAGAAAACCATGATCAGAATGTGTCAGAATGAGCTTTTTGCATATACGTAATCTGTTTTCCTGACATTTGAAGCGGAACATGCCTGAACACCTAACCATCTATAGACCTCAACTGTCATTGTTgcctatttgtttatttcccttaataatacacttttatacatagaaatttaataaagaatatgcTGTGA

Function

NR:

description
PREDICTED: lamin-L(III)-like, partial

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K18585 IF; intermediate filament protein if

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308924.1 False 2936 mRNA 0.49 11 10460121 10479323
XM_034308925.1 True 2993 mRNA 0.49 12 10460121 10479323

Neighbor

gene id symbol gene type direction distance location
saxo2 saxo2 coding upstream 202543 10251725 ~ 10257578 (+)
il16 il16 coding upstream 637892 9792080 ~ 9822229 (+)
tlnrd1 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 coding upstream 685667 9770774 ~ 9774454 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding upstream 705675 9625189 ~ 9754446 (+)
abhd17c abhd17c,LOC107662262,LOC102793890 coding upstream 869784 9546746 ~ 9590337 (+)
cx36.7 LOC108270620 coding downstream 2848 10482171 ~ 10483611 (+)
LOC113536420 NA coding downstream 75962 10555285 ~ 10563493 (+)
rubcn rubcn coding downstream 85936 10565259 ~ 10579393 (+)
tctex1d2 tctex1d2 coding downstream 138489 10617812 ~ 10623164 (+)
LOC113536756 LOC108271257 coding downstream 170935 10650258 ~ 10674052 (+)
G179212 NA non-coding upstream 199513 10256766 ~ 10260608 (+)
G179085 NA non-coding upstream 386104 10073818 ~ 10074017 (+)
G178839 NA non-coding upstream 552675 9824446 ~ 9907446 (+)
G178834 NA non-coding upstream 677375 9782541 ~ 9782746 (+)
G178817 NA non-coding upstream 709408 9750445 ~ 9750713 (+)
G179425 NA non-coding downstream 7374 10486697 ~ 10491773 (+)
G179426 NA non-coding downstream 12710 10492033 ~ 10492469 (+)
G179427 NA non-coding downstream 17325 10496648 ~ 10497140 (+)
G179428 NA non-coding downstream 18165 10497488 ~ 10497712 (+)
LOC113536738 NA non-coding downstream 303802 10783125 ~ 10784114 (+)
LOC113536578 NA other upstream 2189371 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 2212033 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 2215097 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 2216473 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 3188801 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 331347 10810670 ~ 10850923 (+)
G179632 NA other downstream 616830 11096153 ~ 11098811 (+)
G179643 NA other downstream 681023 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 949290 11428613 ~ 11430897 (+)
G180121 NA other downstream 1575635 12054958 ~ 12055749 (+)

Expression


Co-expression Network