LOC113531757


Basic Information

Item Value
gene id LOC113531757
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 18786971 ~ 18794580 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308959.1
AAATAACCAGGCATGAGAGCTGTTGTGCTTGTCTTGACTCTGGCCCTTGTGGcGAGTCATCAGACTAACCTTGtTCCAGAGTTTGCTGCGGGTAAGACCTTTGTGTACAAGTATGAGGGTTTGCTCTTGGGCGGTCTGCCTCAGGAGGGTCTGGCCAAGGCTGGTGTAAAAGTTAGCAGCAAGGTTCTCATCAGTGCTGCAGCCCAGAATACCTTTCTCATGAAGCTCCAGGATCCACAACTCTTTGAGTACACTGGCATCTGGCCCCAGGATGCTTTCAATCCTGCTGCAAAGCTCACCTCAGCACTAAATGCTCAGCTTGTGATTCCCATTAAATTTGAGTATGCCAGTGGTGTGGTAGGTAAGATATTTGCCCCTGCTGGAGTCTCTGCTACTGTCCTGAACCTGCACAGAGGTATCCTCAACATCTTTCAGCTCAACCTCAAGAACACACAGAATGTGTATGAAATGCATGAGGCTGGACCTCAGGGAGTCTGCAAGACCCACTACATGATCAGTGAGGATGAAAAGACCCATCAGATTGCTGTGAGAAAGTCCAAAGACCTGACCAACTGCCATGAGAGAGCCATAAAGGATATTGGTTTAGCTTACACTGAAACCTGTGTTGAGTGCCAGCAGAGGCTTAAGAGTCTGACTGGGACTGCAACATTCAGCTACATCATGAAGCCCACAGATACAGGTGCTCTGGTTTCTGAGGCCATAGCTGAAGAGGTCCATCAGTTCTCACCCTTAAATACAGTAACTGGAGCAGCTCAAATGAAAGCCAAGCAAATTCTGACTTTAATGGAGGCGCAAAATGCCCCTATTGCTCCCCATGCAGGTGAATACTTGGCCCGTGGATCCCTGAAGTATGAATTTGCCACTGAGATTCTTCAAACCCCCATTCAGCTTCTGAAGATCAGTAATGCAAAGGCCCAGATTGTAGAGGTCTTGCAGCATCTGGCTGCAAATAATGTGGAAATGGTTCATGAGGACGCTCCTCTGAAGTTTGTCCAGCTTGTCCAGCTCATGCGTGTAGCTACCTTGGAGAGTATTGAAGCTGTATGGGCTGAGTACAAGACAAAACCTCTTCACAGGCGGTGGATTTTGGATGCAGTTCCTGTTGTGGGTACACCAGCAGCTCTGAAATTCATTAAGGAGAAGTTTCAAGCTGATGAGCTTGCTGTCCCTGAATACACTCAGGCCCTTCTGGTTGCTTTGCACATGGTCACCGCTAATCCAGATGCCATCCAACTCACTGCTAATCTTGCTTCGAACCCCAAAGTCAAGACTATTCCAGTTCTGCGTGAGGTGATCATGCTTGGCTATGGTTCCATGATTGCCAGATACTGTGCTGAAGTTCCTACATGTTCTGCTGATCTTCTGAAGcctatCCATGAGACTGCTGCTGCAGCTATTTCCAAGGCTGAGATTCCTGAAATCACACTGGCTCTTAAGGCTCTGGGCAATGCTGGCCACCCTGCCAGCCTTAAAACCATCATGAAACTCTTGCCTGGATTTGgaagtgctgctgctgccatTCCCATGAGGGTCCAGATTGATGCCACCTTGGCTCTTAGGAACATTGCTAAAAAGGAGCCAAAGCTGgtTCAGCCAGTGGCACTGCAACTTTTCATGAACAAGGCACTCCATCCTGAAGTGCGCATGGTTGCCTGTATTGTGCTCTTTGAGACCAAGCCATCAACAGCCCTTATGGCCACTCTTGGTGGAGCTTTAGAGAAGGAGCCCAACATGCATGTTGCCAGTTTTGCTTATTCTCATATCAAGTCTCTGACCAGAAGCATGGCCCCTGATTATGTGCATGTGGCTGCTGCAGCAAATGTTGCTATCAGGATGTTGAGCCCCAAACTGGACAGACTGAGCTATCATTTTAGCAGAGCCATTCATTTCGATTTCTATATCTCTCCTTTCATGGTTGGTGCTGCTGGTAGTGCTTACATGATcaatgatgctgccaccacttTTCCCAGAGCTGTTATAACTAAAGCACGAGCCTACCTGGCTGGAGCTGCTGCTGATGTTCTTGAGTTTGGTGTGAGAACTGAAGGACTCCAGGAAGCTCTACAGAAGACTCGTGCTGCAGATGAAAATGCTGACCGCATGACTAAAATAAAGCGTACCCTTAAGGCTCTGATGGACTGGAAGTCTATGCCAACCAATCAACCACTGGGTTCCATCTTTGTCAAAGTTCTTGGACAGGAAATTGCTTTTGCCAACATTGACAAAACCTTCATTGACAAAATCATCCAACAAGCAGCACagACTGCTACTGGACCACAAGCTCGTGAACTGTTGAAGGAGGCTGTTAAGGCATTGCAGAAAGGCATTACCTTCCAGTATGCCAAGCCCCTGCTGGCAGCTGAGGTGCGCCGCATTCTACCCAGTTCTGTTGGTGTGCCAATGGAGCTTGGTTATTacactgctgctgttgctgctgcagcTCTCAAAGTTCAGGCAGCTATAACCCCTCCTTTACCTGAGCATCCAGAGACTCTCACTCTTGATCAGTTGATGAAGACTGATTTCCAGTTGCAAGCTGAGGCCAGACCAAGTGTTGCCCTCCAGACATTTGCTGTGATTGGAGTGAACACTGCCTTGATTCAGGCTGCTGTTATGGCCAGAGAGGTACACACTGTTTTACCAGGAAAACTGGCTATAAGAGCTGACCTTCCAAAGGGCAACGTAAAGCTGGAGGCTCTGCCTGCTGCTGTTCCTGATCATATTGCTGCTGTCAGCTTTGAGACCGTTGCTGTGGCCAGAAACATCGAGGACCTCCCCACTGAGAGAGTAGCATCTCTGGCACCTCCAATGCCCTCTGATGCTGCAGAGAGGTTTATACCTGCCTCAATTCAGAAATCCTTGTGTGGTTCTCTTCCTTATTTTAACATCAAAGGATGTCTTAAGTTTGCCTCCCAGAATGCTGGCTTTATGGAGTTAAATCCTCTGTATTATATTGCTGGACGACACTCAGCTCAAATTTCAGTGGAAAGAGGTGATGGTCCTGCACTAGAAAGACTGGAGGCTGAGGTACAAGTTGGACCTAAAGCAGCTGAGAAGCTCATGAAAGAGATCAGCCTTGTTGATGCTGATAATCCAGAAGAAAGTACCATCCTGTTGAAACTAAGGGAAATTCTGGAGGCTGGACTGAGGAATGtaaatttcagctcaatcaaCTACTCTTCCTCTGCCAGCAGCAGTAGGAGTGCCAGCAGCAGTAGGAGTGCCAGCAGCAGTAGGAGTGTCAGCAACAGTAGGAGTTCCAGCAGCTCTAGGAGTTCTTCCAGTGCCCGTGTGTCCAAGaatacaaatacatatggTCAGTTCTGGAAATTCCATAAGGATCAGtaCCTGACACCACAGGGAATGTCAAAAGCCAGCAGCTCATCTAGCATTGAGACCATACAGAGAAAGGCTAACCTacttggagatgctgttccacCTGCTTTTGCCATCATCGCTCGTGCTGTTAGAGCTGACCGCAAGCTGGGATACCAGTTTGCTGCTTATTTGGATAAGCCCACTTCAAGAGTACAGGTTGTGTTTGCCTCTATTGCTGAGAGTGACAAATGGAAGATATGTGCTGATGCTTTACTTCCAAGCAAGCATAAATTCGCTGCCAGGTTTGCTACTGGTGAGCAGTGCCAGGAATATTCTGTAGCTGTCAAGGCTGAAACTGGTCTGCATGAGGCACATCCTGCTGCACGGTTGGGATTCGAATGGAACAGAGTACCAAGAATCCTAACTATTGCTATCCCCTATGCCAAGTGGGAGTACATCTTTAAGGTAGCTCCCCTGGCTGGCGTTAATGCTGATAGAGCTGAGAATAATGAAAGAGAGATTGACTTCACTTTTGCCCTACCCACTCAAAAGTCTCTCAGCATTATTATGAGGATTCCAACGATGACACTGTCAAAGTCAGCTATGCCTCTTCCTATTGCCCTGCCGATTGAACAGGATGGAACTATTCCAGCTCTCAAGAATTTCGACATTCGTGCCATTGTTGAGAAATGGCTGAATGATATCCGAAATAGCTGA

Function

GO:

id name namespace
GO:0032355 response to estradiol biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0009410 response to xenobiotic stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308959.1 True 4056 mRNA 0.48 28 18786971 18794580

Neighbor

gene id symbol gene type direction distance location
pik3ca pik3ca,LOC107574159 coding upstream 3093 18764099 ~ 18783878 (+)
si:ch211-247n2.1 kcnmb2,LOC108428381 coding upstream 45212 18719224 ~ 18741759 (+)
LOC117598435 NA coding upstream 115604 18666576 ~ 18671367 (+)
si:ch211-51h4.2 LOC108442512 coding upstream 235817 18427082 ~ 18551154 (+)
nlgn1 nlgn1,LOC107593140,LOC106584306 coding upstream 652990 17878240 ~ 18133981 (+)
LOC113527405 NA coding downstream 40593 18835173 ~ 18842544 (+)
ctbs ctbs coding downstream 53973 18848553 ~ 18852369 (+)
uox uric,LOC103030682,LOC108430123 coding downstream 70550 18865130 ~ 18877076 (+)
ttll7 ttll7 coding downstream 117738 18912318 ~ 18970547 (+)
vtg3 LOC108270710 coding downstream 477372 19271952 ~ 19287643 (+)
G183796 NA non-coding upstream 182049 18598718 ~ 18604922 (+)
G183797 NA non-coding upstream 189731 18593698 ~ 18597240 (+)
G183798 NA non-coding upstream 198255 18576732 ~ 18588716 (+)
G183805 NA non-coding upstream 217012 18568625 ~ 18569959 (+)
G183787 NA non-coding upstream 349010 18429506 ~ 18437961 (+)
G184167 NA non-coding downstream 96659 18891239 ~ 18894875 (+)
G184309 NA non-coding downstream 217827 19012407 ~ 19012612 (+)
G184340 NA non-coding downstream 286672 19081252 ~ 19081485 (+)
G184504 NA non-coding downstream 665238 19459818 ~ 19461690 (+)
G184503 NA non-coding downstream 667244 19461824 ~ 19462843 (+)
LOC113526284 naaladl2 other upstream 377914 18166622 ~ 18409057 (+)
G183549 NA other upstream 990352 17795445 ~ 17796619 (+)
ect2 ect2,LOC107674529,LOC107718889 other upstream 1005157 17754176 ~ 17781814 (+)
mcf2l2 LOC108270998,LOC108439422,LOC106613920 other upstream 1035469 17672171 ~ 17751502 (+)
anos1b LOC108271321,LOC108439428 other upstream 1150576 17598464 ~ 17636395 (+)
adgrl4 adgrl4,LOC102783218 other downstream 460351 19254931 ~ 19270261 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other downstream 691748 19486328 ~ 19487784 (+)
LOC113546543 NA other downstream 732297 19526877 ~ 19548212 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other downstream 737501 19532081 ~ 19554969 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other downstream 900647 19695227 ~ 19700274 (+)

Expression


Co-expression Network