chsy1 (chsy1,LOC107662251,LOC107755644,LOC107742304)


Basic Information

Item Value
gene id chsy1
gene name chsy1,LOC107662251,LOC107755644,LOC107742304
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8727720 ~ 8782842 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308960.1
tttggtggaatGGCAGCCAGAAGCCGAAGAGCATGGTTCAGTGTGCTTTTGGGATTGGTGGTGGGCTTTACTCTGGCTTCCAGGCTGATCTTACCCCGCGCCTCGGAGCTGAAGAAAGCCGGGCAGAGGCGCAGTGCGAGCGGCGGGGGAGGCTGCGGCATCAGCGGCCCGCTGAGGAGAGAGCACGGCGGGGGGATGAGGTGGCCGGCGCAGGGGAGCGGCATGCTGCCAACCGAGAAAGCCGTCCAGAGTAGCCATAATTTCCTCTTCGTGGGCGTTATGACCGCGCAGAAATACCTGAACAACCGCGCAGTAGCGGCTTATAGGACCTGGGCTCAGACCATTCCAGGCAAAGTGGAGTTCTTCTCTAGCGAGGGTTCGGACACGTCCATCCCTATCCCCATCGTAGCCCTGAAAAACGTGGACGACTCTTACCCTCCACAGAAGAAATCCTTCATGATGCTCAAGTACATGCACGACCACTACCTGGACCGGTTCGAGTGGTTCATGCGTGCCGACGACGACGTCTACATCAAGAGCGAGCGCCTGGAGAGCTTCCTGAGAAGCCTGAACAGCAGCGAGGCCATTTTCCTGGGCCAGACAGGGATGGGCGCTCGTGACGAGCTGGGCAAGCTGGCGTTGGAGCCCGGCGAGAACTTCTGCATGGGAGGCCCGGGTGTGATCATGAGCCGCGAGGTGCTGCGCAGGATGGTGCCTCACATCCGCCAGTGCCTGCAGGAGATGTACACCACACACGAGGACGTGGAAGTGGGACGCTGCGTGCGCCGATTTGCTGGGGTGCAGTGCGTCTGGTCTTATGAGATGCAGCAGCTATTTTATGAGAACTACGAGCCGAATAAGAAGGGCTACATCCGGGACCTGCACAACAGTAAGATCCACAGAGCCATCACACTCCATCCCAACAAGAACCCGCCTTATCAGTATCGGCTGCACAGCTACATGCTGAGCCGCAAAATCGCTGAACTTCGCCACCGCACCATTCAGCTTCACCGCGAGATCGTGCAGATGAGCCGATATGGCAACACGGAGGTGCATAAGGAGGACTTGCAGCTTGGTATGCCTCCCTCATTCATGCGTTTTCACCCACGTCAGCGGGAGGAGGTGCTCGAGTGGGAGTTCCTCACTGGGAAGTACATTTTCTCTGCCTTGGATGGGCAGCCCCCACGTCGCGGCATAGACTCCTCCCAGAAAATGGCACTGGACGACATCATCATGCAGGTTATGGAAATGATTAATGCCAACGCGAAGACGCGAGGGAGAGTCATCGACTTCAAAGAGATTCAGTATGGCTACCGGAGGGTTAACCCAATGTATGGAGCCGAATATGTGCTTGACCTGTTGCTACTTTACAAAAAGCACAAAGGGAAGACCATGACAGTACCTGTCAGGAGACACGCTTATCTTCAGCAGACCTTCAGTAAGATCCACTTCCTGGAAGAGGACGAGATGGATGCTCAAGCACTGGCTGCGAGGATCAACCAGGGATCGGACTCGCTGTCTTTCCTCTCCAGCTCCCTTAAGAAGTTTGTGCCTTTCAAACTTAGCGGCTCAGGCACAGACCTGCAAGAACCCAAAGAGAAGAAGATCAACATCCTCGTGCCGCTGGCGGGACGTTATGATATATTTGTACGCTTTATGGCCAACTTTGAGAAGATCTGCCTCATTCCAAACCAGAACGTCAGGCTGCTGATTCTTCTCTTTAACACTGACAACAACACTGAGCGTATGAAGCAGATTGAGCTGATGCGAGAGTATCGTTCGAAATATCCCAAAGCAGACATGGAGATCGAGCCTGTTTCTGGCCCCTTCTCCCGCGCCCTGGCCCTGGAGGTCGGCTCCGCCCATTTCAGCAACGACTCCTTGCTCTTCTACTGTGACGTGGACTTACTGTTTACAGCCGATTTCCTCAAGCGCTGTCGGGCAAACACCATATTAGGAGAACAGACCTACTTTCCGATCATCTTTAGCCAGTATGACCCAAAGGTTGTCTACGCGGGAAAAGTACCAAGCAACAACCACTATGTGTTCACGTCCAAAACAGGCTTGTGGAGACACTTTGGCTTCGGCATCGTCTGCGTGTACAAAGGTGACCTGGTTAAAGCAGGTGGCTTTGACGTCTCCATCCAAGGGTGGGGAATGGAAGATGTGGACCTCTTTAACAAATTTGTCCAGTCAGGTATTAAACTGTTCAGGAGCACAGACACTGGCATAGTGCATGTACATCACCCTGTCATATGTGACCCCAACTTAGATCCCAAACAGTACAAGATGTGCCTGGGTTCCAAAGCCTCATCCCATGGTTCAACACAGCAGCTGGCTGAGCTGTGGCTGGAGAAGAACGACCATGGCTTCCGAAGGATCTCTAGTTCAAACAATGGCTCAATGAGGACAGCATAGGCCCTGCAAGCAAGGACCTCTACCTGCCTGTCTTCCTCTTTATGGTGTTTTCAGCtacctaatttatttttttttcataaaaaaaagacttctgtggatatattttgaaataactCCTTTTATaaagtatacaaaaaaaaaaaaaacaagagcaaaGACATTATCAGTACCAGAAATTGGTTATGAAATGGACCCTCAAGTGTTGGAACATcaaagtgtgtttttctttcacaaacccaaaaaaaatcagcattgtATTTATGGCACCTCATGTGAGGACGCTAAGTATACTGTGTACCTCAGTGATGTGCACatcaatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagactcGCATTAATGAGGGTCCGACTTCAGATGTGCAAACGTGGTGTTGAGGAAcaatttaatgtattatttgtgAATGTTTACAGGAAGCCTCACAAACAAGCGTTTGTTGGAAAAGCTGacaaaataactaaattatTGCATATAAGGGCCATAAAACATGTCTGCATTTCTGTTGATCCctacttttattttctgtaatgacactgttttgttttgttttgttttaatttcacgAATTTTGACTTATGTGAACAGAACTGCTGGATCTAGGGTTTTGACTTTTCCAACTTGTTCCCGCTGTCTAATTTATTGAATATGCAGTCTTGTGTAGCGCTGTCAGACTGCCGTTGTGTATATTAGATTGTTATAGATTGCTCCATCACGATCATCGagttgttcatttgtttttctgttacTCAATTAATTTGGTTACCAAAGACTTTTTGCACAGTTGCTGTAGGTGTTTGTgcgtgtttgtgggtgtgtgtgcgtgtgtgtttatgtatgcaGGCAGTAGCACAGTCATGAACATTAGAAATGAGGTACTGACAGTCAGATTATTTACAATACTCCTACAACTTATTACCTAGTCATGTAGAaatagtcagttttttttttgtttgtttttttcccccccaaaatGTTTCACCAAATCTGCACagcgtttttttgtttgtttggttgttcttgtttttttttgttttttttttcccttgttagACCTTTAATATTGTAAAGCAATCCGCAGGACCTTGATTGATCATTCCTCCATGGTGGAGCCATGCTGTGTGGAGGTGTGAGGGGTGTTTGCCCACCACCTCACCTTTGGGACTCATGGACTGCTCTTCCTCAATGTTACACACACCATCTGTCTGGGGCTTATTTTGTACTTCTGTTCGGTTAGCCCCCATCCAACTGGGAAAAggttatatattaataaatggaaaaaaagtttgttaaa

Function

symbol description
chsy1 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Acts upstream of or within several processes, including animal organ morphogenesis; chondroitin sulfate proteoglycan biosynthetic process; and pectoral fin development. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cranium; forerunner cell group; inner ear; optic primordium; and pectoral fin bud. Human ortholog(s) of this gene implicated in temtamy preaxial brachydactyly syndrome. Orthologous to human CHSY1 (chondroitin sulfate synthase 1).

NR:

description
PREDICTED: chondroitin sulfate synthase 1

GO:

id name namespace
GO:0060876 semicircular canal formation biological_process
GO:0050650 chondroitin sulfate proteoglycan biosynthetic process biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0003007 heart morphogenesis biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0033339 pectoral fin development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K13499 CHSY; chondroitin sulfate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308960.1 True 3773 mRNA 0.48 3 8727720 8782842

Neighbor

gene id symbol gene type direction distance location
selenos selenos coding upstream 3638 8718527 ~ 8724082 (+)
snrpa1 snrpa1 coding upstream 9891 8711155 ~ 8717829 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding upstream 26155 8631823 ~ 8701565 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding upstream 156552 8565280 ~ 8571168 (+)
kbtbd13 kbtbd13 coding upstream 193581 8532235 ~ 8534139 (+)
lins1 lins1 coding downstream 212534 8995376 ~ 9001851 (+)
cers3a cers3,LOC107692405 coding downstream 224527 9007369 ~ 9035454 (+)
adamts17 adamts17,LOC107662259,LOC107692780,LOC107563246,LOC107742308,LOC107553817,LOC107719674 coding downstream 256368 9039210 ~ 9189919 (+)
minar1 kiaa1024,si:cabz01029535.1,LOC107719677,LOC107742309,LOC107662343,LOC107692337 coding downstream 443605 9226447 ~ 9257997 (+)
zfand6 zfand6 coding downstream 553805 9336647 ~ 9349909 (+)
G178192 NA non-coding upstream 138165 8588820 ~ 8589555 (+)
G178170 NA non-coding upstream 183245 8544269 ~ 8544475 (+)
LOC113536702 LOC108271401 non-coding upstream 205598 8514131 ~ 8522122 (+)
G178067 NA non-coding upstream 286503 8408009 ~ 8441217 (+)
G178260 NA non-coding downstream 24763 8807605 ~ 8808944 (+)
G178383 NA non-coding downstream 200123 8982965 ~ 8984242 (+)
G178539 NA non-coding downstream 422615 9205457 ~ 9205678 (+)
G178740 NA non-coding downstream 494763 9277605 ~ 9277816 (+)
G178741 NA non-coding downstream 495045 9277887 ~ 9278116 (+)
LOC113536578 NA other upstream 456970 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 479632 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 482696 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 484072 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1456400 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 2027828 10810670 ~ 10850923 (+)
G179632 NA other downstream 2313311 11096153 ~ 11098811 (+)
G179643 NA other downstream 2377504 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2645771 11428613 ~ 11430897 (+)
G180121 NA other downstream 3272116 12054958 ~ 12055749 (+)

Expression


Co-expression Network