LOC113527219 (LOC108270689,LOC108429511,LOC107653644,LOC107715111,LOC107588053,LOC103463808,LOC100711005,LOC106955782)


Basic Information

Item Value
gene id LOC113527219
gene name LOC108270689,LOC108429511,LOC107653644,LOC107715111,LOC107588053,LOC103463808,LOC100711005,LOC106955782
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14600430 ~ 14611565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308982.1
TTGGCTCGGCGTGTGTGGCGTCATGAAGAAACATTCAATGCGGAAGTAGAGAAACTGCACAGATTTGGGGGAAATATTTCACTGAGAGAGGACGCTAAAGATTTTAAAACGCTGAACTTAAATATTTCGGCagtgtatttagtgtgtgtggAACAATGTAGTAGCCAGCAGGGAAACCTATAATATCTCCAGACCGTGTTTTCAGTATTTGAAGAGAGTGAAGTTCAGCTGTAACATCACGACTGCGATGGCTAATAGTAATTTACAGaAAGCCATTGACTTGGCCACCAAGGCTTCAGAGGAGGACAAGGCCAAAAACTACAAGGAAGCTTTGCGCCTCTATGAGCATTCTATTCAATACTTTCTACATGTGGTGAAGTACGATGCTCAGGGTGAAAAGGCCAAGCAAAGCATCAGGGCGAAGTGTACAGAGTATCTGGacagagctgagcagctgaAGGAATATCtgaaaaaggcagaaaagcaGCCACCTGCCAAGCCTGTCAAAGTGTCCAATGACAAAGGgaatgacagtgatgatggtgataattcAGAGAAGAAGAAATTGCAGAATCAGCTTCAAGGTGCCATTGTCATGGAGAAGCCAAACATTAAGTGGAGTGATGTTGCTGGCTTAGAAGGAGCCAAGGAGGCGCTGAAAGAGGCAGTCATTCTACCCATTAAATTTCCTCACCTTTTCACAGGAAAGAGAACTCCATGGAGAGGGATCTTGCTTTTTGGCCCTCCAGGTACAGGGAAATCATACCTGGCTAAAGCAGTGGCCACTGAGGCCAACAACTCAACCttcttctccatctcctcctctgATCTGGTGTCTAAATGGctgggagagagtgagaaATTGGTGAAGAACCTGTTTAGCTTGGCTCGGCAAAACAAACCCTCCATCATCTTCATCGACGAGATCGACTCTCTGTGTGGCTCCAGGAGTGATAACGAGAGTGAAGCAGCTCGCCGAATAAAGACGGAGTTCCTGGTCCAGATGCAAGGTGTTGGAAATGATAATGAGGGAATTCTGGTGCTTGGAGCAACCAATATACCTTGGACTTTAGATTCTGCCATCAGAAGAAGGTTTGAGAAGCGTATTTACATCCCACTTCCTGAGCAGCATGCACGATCGCTCATGTTCAAGCTCAACCTCGGTACAACCCCCAACAGCCTCACCGATAATGACTTCATCACGCTAGGACAGAAGACCGAGCACTATTCAGGCGCCGACATCAGCATCATTGTCAGGGACGCTCTCATGCAGCCCATCCGCAAAGTACAGTCGGCCACTCACTTCAAAAAGGTCCGTGGAAAAACTTGGAACAACCAGGATGTAATAGCGGATGACTTATTGACCCCTTGCTCTCCAAGTGACCCAAACGCGATAAAGATGACGTGGGTAGATGTGGAAGCTGATAAACTCCTGGAGCCCATCGTCAGCATGGAGGACATGCTCAGGTCACTGGAAAAAACCAAGCCCACTGTGAATGAGGAAGACCTGAAGAAGCTGATGAAGTTTACTGAGGACTTCGGCCAAGAAGGCTAATTACACAGCaaccataaaacacaaaaaaacaaggacCTTTGTGTTATGCTTTTTACATTCCATTTTATCTTTCTACTGAgagtttattataaatacttttGTAATAATGGCCACTGTTTGTGGAATATAAGCTACATAATGTAGCTTGTTGAACTGCCTATCTACCTAATATGGTGTGAACCGGGAACTGAGatcatgtatttattgtatgtGGAAGTTATACTGGCGGGAATATTAAGCTGTAAGTTGGCACTTGAATAAGTATTGTAAATAGGCTTGGCCAGGAGATGGTAATTAATGATAGTGTCCTAGtttgaaaattttttatttagagatttagagaaaaaaaaaaattgagattttTGTCAGGttgaaatgataaatgatataaatgtaaaagtttgaAGAAGTTTGTGGGTTTATTTTAGTGACATGAGACATGACTTCCAAAATAGCACATTGATTTAAGGTGAGCTCTGTCTGTGTCGGTCTGTATGCGTGTGTCTGGGGTTCACCTCCTCACTCCCGTTTCACTCCTGACTGTAGACTGTTGTTTGTAGAGTGCTGTACAGAGCAGCAGTGAGGGAGACAATAGGCCAACTTTAGACAAAATGGATCACCATAACCTGCCATCCAATAGACAAATATGTGAACAGTACCTATAAAATACAGTTATGTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308982.1 True 2235 mRNA 0.43 11 14600430 14611565

Neighbor

gene id symbol gene type direction distance location
mydgf mydgf,LOC107566370 coding upstream 112618 14481557 ~ 14487812 (+)
mibp mibp,LOC108271439,LOC103035840,LOC108430237,LOC107734093,LOC107702642,LOC107566367,LOC107698603 coding upstream 122679 14473342 ~ 14477751 (+)
atcaya atcay,LOC108270591,LOC108430235,LOC103374683 coding upstream 130443 14463188 ~ 14469987 (+)
c11h19orf44 c10h19orf44 coding upstream 209877 14383457 ~ 14390553 (+)
cers4a cers4 coding upstream 241563 14343238 ~ 14358867 (+)
ier5 LOC100304758 coding downstream 59316 14670881 ~ 14672730 (+)
tal1 tal1 coding downstream 85018 14696583 ~ 14704088 (+)
tm2d1 tm2d1,LOC107653653,LOC107715116,LOC107669801 coding downstream 226932 14838497 ~ 14849100 (+)
frem1b LOC108271303,LOC108429520,LOC107669836,LOC105904425,LOC107728586,LOC107599441 coding downstream 438617 15050182 ~ 15079767 (+)
atpaf1 atpaf1 coding downstream 469355 15080920 ~ 15085382 (+)
G181300 NA non-coding upstream 162421 14437375 ~ 14438009 (+)
G181252 NA non-coding upstream 190353 14409722 ~ 14410077 (+)
G181236 calr3,LOC107702625,LOC102296215,LOC107717161,LOC107723933 non-coding upstream 220957 14375493 ~ 14379473 (+)
G181233 LOC108271251 non-coding upstream 239058 14360788 ~ 14361372 (+)
G181157 NA non-coding upstream 307049 14145873 ~ 14293381 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding downstream 53136 14664701 ~ 14665064 (+)
G181588 NA non-coding downstream 256362 14867927 ~ 14930862 (+)
G181599 NA non-coding downstream 349320 14960885 ~ 14977551 (+)
LOC113533733 NA non-coding downstream 383123 14994688 ~ 15002233 (+)
G181632 NA non-coding downstream 474336 15085901 ~ 15086320 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 451 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 37420 14561555 ~ 14563010 (+)
LOC113531387 ctxn1 other upstream 359889 14222218 ~ 14240541 (+)
G181175 uhrf1 other upstream 426212 14165026 ~ 14174218 (+)
G180936 NA other upstream 1104445 13495590 ~ 13495985 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other downstream 10978 14622543 ~ 14649685 (+)
pdzk1ip1 NA other downstream 97362 14708927 ~ 14711727 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 1057233 15668798 ~ 15673982 (+)
LOC113532318 NA other downstream 1643482 16255047 ~ 16256782 (+)
G182819 NA other downstream 1971738 16583303 ~ 16584943 (+)

Expression


Co-expression Network