LOC113533733


Basic Information

Item Value
gene id LOC113533733
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14994688 ~ 15002233 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403448.2
TTTTCTGCCAAGCTTCACGGAGAGATATTACACGCcaaggcaagtgtgtgtgtttgtgccaaGGCTTTTTTGGAGGCAGAATGGCACGGACGCAGAAAAGGCAGTAGAGTCTACAACAGGAATACCGCTCCACGAGCACGGGTTAACATTACACAGCACTGGTTTTAAAAATGCGAGAGTCACTGCTATACGACGAATGCAAAGGATGGGAAAACGTGAACTGGGTGGAATTTTCTCCATCTGCAGGGGAGGAAAGCTTTGCCTGCCAGAGCGTAGGAGTATCAGAGAGCAGCGACCTCATTCTGCCCCGTCTTCATAGGATTCCCCACAAAACCACAAGAGGGTGATCTTTCAATACACAAATCCACTGACTTTTCATCAACTCGGAAAATGGTCATTTCAGGAGCTTCCTGTCCCGAAATGCATCAAAGCTTTAACAATTACAGgcTTTCAGGTGCATGATCAGTGCCAGGCCTATTGTGAATTGAAGCAGCGGGATGTTCGATGCCCCTCTCCCACAGCGTGACTAACTAACAGAGACAGTGCCAGAGGAGGCGACTCCGATGAGGGTTCGATGCTGCTGATGCCTCCACTCATCACTGCCTTTGTTGTTGCCTCACTATCTTCTCACAACATACGCTTCTGATAAGTGCACCCTGGCAAAATCAGCACCAtccaaaacatttttacaaGCAAAAATATCCTCCTTTAGCCTGACCGGGTGAGAattcttgtgtttattttagtgagaatctgtaatttttcttttgtctAATTCCACCAATCATGTCCTCTTGCCTATATTTAgacatgttatatatatatatattttgtcctaatttacagtactgtacatattatatattttttgagcCCTTCAGGTGTATTTTTAGCTtggaaataagaaaagaatttaaTTTGTCTAATATTTCACTTTGAGACACTGAAATTATGAAATGTTGCTTTTTTCCCAGAAAACTGTGCATCCAAGCAAAAGGATTTCTAAAATTAGAATAGTTAGAATTTATTAGAAAGTTACAAAGTCATTATCCAAATACACAAAAGAAGTATGTGACTACTgggttttattttcttgtgCCACTGACTTTTGTCATTTAGATGTTTAGACTGCATTctatttatacaattttttgTTACATAATTTAAAAGCATAGAACACATTGAAAATGTCTGTTAAATGTGTGTCAGGGTAAGTCAGAGCTCAGGAGCTACAGTTTAAAACAACGTCACCCTCTAATGGCTAAAGTTTGCAATTACATCTACCTAAGAAGCGTCTTACAACCATGTTATAAGCAAGGTCACAGGAGAAGTGCCCAAACTACAAagttctatattatatataagataatataataatataatataatataacattatataataatataaataacatatacatcctataaaaaaattgtaaataatgaaaaatatgtcTCTAGctcagtttgtgtgtgatgCTTTGGAGAATAAACTCCTGTTTACACATTCAAGATTTCACATGTATTACACAGcctatgtggaaaaaaaatgtaaacatacacaCGCTACCAGTATAAAGTCCAGTGCAAGGCTTTCCTTGTCTGATCGTCCTTACTAAACATTCCTCCCTCAGTGAAGGGTCACAAAGGGGTCACCTGGCTTTCAGTATAAACCTCAGAGATTCACCGTGCACTGAAATTGCTTTTGAGAGAAGACATACTCGGCTAAGGAGACATACTATATGCTTACTATCGGCTGCATGAAATCCTAATATGAAATGGCTAAACTaatcttattctttttttaatatatgtttaaacAATGATGCACCACATataagataaacaaaaaaaataaatg
>XR_004579076.1
TTTTCTGCCAAGCTTCACGGAGAGATATTACACGCcaaggcaagtgtgtgtgtttgtgccaaGGCTTTTTTGGAGGCAGAATGGCACGGACGCAGAAAAGGCAGTAGAGTCTACAACAGGAATACCGCTCCACGAGCACGGGTTAACATTACACAGCACTGGTTTTAAAAATGCGAGAGTCACTGCTATACGACGAATGCAAAGGATGGGAAAACGTGAACTGGGTGGAATTTTCTCCATCTGCAGGGGAGGAAAGGATTCCCCACAAAACCACAAGAGGGTGATCTTTCAATACACAAATCCACTGACTTTTCATCAACTCGGAAAATGGTCATTTCAGGAGCTTCCTGTCCCGAAATGCATCAAAGCTTTAACAATTACAGgcTTTCAGGTGCATGATCAGTGCCAGGCCTATTGTGAATTGAAGCAGCGGGATGTTCGATGCCCCTCTCCCACAGCGTGACTAACTAACAGAGACAGTGCCAGAGGAGGCGACTCCGATGAGGGTTCGATGCTGCTGATGCCTCCACTCATCACTGCCTTTGTTGTTGCCTCACTATCTTCTCACAACATACGCTTCTGATAAGTGCACCCTGGCAAAATCAGCACCAtccaaaacatttttacaaGCAAAAATATCCTCCTTTAGCCTGACCGGGTGAGAattcttgtgtttattttagtgagaatctgtaatttttcttttgtctAATTCCACCAATCATGTCCTCTTGCCTATATTTAgacatgttatatatatatatattttgtcctaatttacagtactgtacatattatatattttttgagcCCTTCAGGTGTATTTTTAGCTtggaaataagaaaagaatttaaTTTGTCTAATATTTCACTTTGAGACACTGAAATTATGAAATGTTGCTTTTTTCCCAGAAAACTGTGCATCCAAGCAAAAGGATTTCTAAAATTAGAATAGTTAGAATTTATTAGAAAGTTACAAAGTCATTATCCAAATACACAAAAGAAGTATGTGACTACTgggttttattttcttgtgCCACTGACTTTTGTCATTTAGATGTTTAGACTGCATTctatttatacaattttttgTTACATAATTTAAAAGCATAGAACACATTGAAAATGTCTGTTAAATGTGTGTCAGGGTAAGTCAGAGCTCAGGAGCTACAGTTTAAAACAACGTCACCCTCTAATGGCTAAAGTTTGCAATTACATCTACCTAAGAAGCGTCTTACAACCATGTTATAAGCAAGGTCACAGGAGAAGTGCCCAAACTACAAagttctatattatatataagataatataataatataatataatataacattatataataatataaataacatatacatcctataaaaaaattgtaaataatgaaaaatatgtcTCTAGctcagtttgtgtgtgatgCTTTGGAGAATAAACTCCTGTTTACACATTCAAGATTTCACATGTATTACACAGcctatgtggaaaaaaaatgtaaacatacacaCGCTACCAGTATAAAGTCCAGTGCAAGGCTTTCCTTGTCTGATCGTCCTTACTAAACATTCCTCCCTCAGTGAAGGGTCACAAAGGGGTCACCTGGCTTTCAGTATAAACCTCAGAGATTCACCGTGCACTGAAATTGCTTTTGAGAGAAGACATACTCGGCTAAGGAGACATACTATATGCTTACTATCGGCTGCATGAAATCCTAATATGAAATGGCTAAACTaatcttattctttttttaatatatgtttaaacAATGATGCACCACATataagataaacaaaaaaaataaatg

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04724 Glutamatergic synapse
ko04720 Long-term potentiation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403448.2 True 1863 lncRNA 0.38 3 14994688 15002233
XR_004579076.1 False 1800 lncRNA 0.37 3 14994688 15002233

Neighbor

gene id symbol gene type direction distance location
tm2d1 tm2d1,LOC107653653,LOC107715116,LOC107669801 coding upstream 145588 14838497 ~ 14849100 (+)
tal1 tal1 coding upstream 290600 14696583 ~ 14704088 (+)
ier5 LOC100304758 coding upstream 321958 14670881 ~ 14672730 (+)
LOC113527219 LOC108270689,LOC108429511,LOC107653644,LOC107715111,LOC107588053,LOC103463808,LOC100711005,LOC106955782 coding upstream 383123 14600430 ~ 14611565 (+)
mydgf mydgf,LOC107566370 coding upstream 506876 14481557 ~ 14487812 (+)
frem1b LOC108271303,LOC108429520,LOC107669836,LOC105904425,LOC107728586,LOC107599441 coding downstream 47949 15050182 ~ 15079767 (+)
atpaf1 atpaf1 coding downstream 78687 15080920 ~ 15085382 (+)
rab3b LOC108270584,LOC108429523,LOC103027359,LOC107653655,LOC107592692,LOC107669838 coding downstream 86007 15088240 ~ 15096387 (+)
nrd1b LOC108271269,LOC108429524,LOC100693897,LOC102784242 coding downstream 97082 15099315 ~ 15114363 (+)
axdnd1 axdnd1 coding downstream 112817 15115050 ~ 15126124 (+)
G181599 NA non-coding upstream 17137 14960885 ~ 14977551 (+)
G181588 NA non-coding upstream 63826 14867927 ~ 14930862 (+)
G181475 stx6,LOC107715114,LOC107669815,LOC107653648 non-coding upstream 329624 14664701 ~ 14665064 (+)
G181300 NA non-coding upstream 556679 14437375 ~ 14438009 (+)
G181252 NA non-coding upstream 584611 14409722 ~ 14410077 (+)
G181632 NA non-coding downstream 83668 15085901 ~ 15086320 (+)
G181851 NA non-coding downstream 291005 15293238 ~ 15294067 (+)
G181824 hnrnpm non-coding downstream 297015 15299248 ~ 15308946 (+)
G181944 NA non-coding downstream 370525 15372758 ~ 15372970 (+)
G181945 NA non-coding downstream 370987 15373220 ~ 15383177 (+)
pdzk1ip1 NA other upstream 282961 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 345003 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 394709 14589880 ~ 14599979 (+)
LOC113540185 NA other upstream 431678 14561555 ~ 14563010 (+)
LOC113531387 ctxn1 other upstream 754147 14222218 ~ 14240541 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 666565 15668798 ~ 15673982 (+)
LOC113532318 NA other downstream 1252814 16255047 ~ 16256782 (+)
G182819 NA other downstream 1581070 16583303 ~ 16584943 (+)
G182877 NA other downstream 1911025 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 2119666 17121899 ~ 17189315 (+)

Expression


Co-expression Network